Wall clock time and date at job start Wed Apr 1 2020 05:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.47002 * 2 1 4 4 C 1.53003 * 109.46709 * 240.00075 * 2 1 3 5 5 C 1.50694 * 109.47015 * 65.00402 * 4 2 1 6 6 O 1.21280 * 120.00220 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00111 * 179.97438 * 5 4 2 8 8 C 1.44789 * 120.17697 * 359.97438 * 7 5 4 9 9 C 1.51513 * 112.22639 * 264.55409 * 8 7 5 10 10 C 1.51315 * 113.25134 * 285.36861 * 9 8 7 11 11 H 1.09000 * 111.31232 * 186.10620 * 10 9 8 12 12 C 1.54724 * 106.48050 * 307.66231 * 10 9 8 13 13 C 1.54238 * 104.37047 * 89.11976 * 12 10 9 14 14 C 1.50866 * 105.27419 * 11.56213 * 13 12 10 15 15 H 1.09002 * 106.52796 * 122.53039 * 14 13 12 16 16 C 1.49815 * 120.18217 * 179.72729 * 7 5 4 17 17 N 1.48653 * 109.01746 * 62.92115 * 10 9 8 18 18 C 1.36930 * 127.84497 * 97.34052 * 17 10 9 19 19 H 1.08001 * 119.99788 * 359.97438 * 18 17 10 20 20 C 1.38815 * 120.00509 * 180.02562 * 18 17 10 21 21 N 1.31618 * 119.99391 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00271 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47721 * 59.99388 * 22 20 18 24 24 H 1.48496 * 109.47173 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.46587 * 299.99217 * 22 20 18 26 26 C 1.50696 * 109.46846 * 120.00416 * 2 1 3 27 27 C 1.39868 * 126.04146 * 60.02398 * 26 2 1 28 28 N 1.30844 * 108.20218 * 179.97438 * 27 26 2 29 29 N 1.40086 * 108.20537 * 0.02562 * 28 27 26 30 30 C 1.46499 * 126.03748 * 180.02562 * 29 28 27 31 31 C 1.34949 * 107.92189 * 0.25805 * 29 28 27 32 32 H 1.08999 * 109.46847 * 299.99970 * 1 2 3 33 33 H 1.09000 * 109.47022 * 59.99881 * 1 2 3 34 34 H 1.08997 * 109.47002 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.46685 * 184.99832 * 4 2 1 36 36 H 1.08995 * 109.47262 * 304.99861 * 4 2 1 37 37 H 1.08998 * 108.93433 * 25.26263 * 8 7 5 38 38 H 1.08999 * 108.92924 * 143.84857 * 8 7 5 39 39 H 1.08997 * 108.72972 * 46.34431 * 9 8 7 40 40 H 1.08998 * 108.72583 * 164.51789 * 9 8 7 41 41 H 1.09006 * 110.45064 * 207.83979 * 12 10 9 42 42 H 1.08997 * 110.45610 * 330.39645 * 12 10 9 43 43 H 1.09004 * 110.27885 * 130.50488 * 13 12 10 44 44 H 1.08999 * 110.28224 * 252.51306 * 13 12 10 45 45 H 1.09006 * 109.54621 * 270.54954 * 16 7 5 46 46 H 1.08999 * 109.55071 * 30.82614 * 16 7 5 47 47 H 0.97006 * 119.99878 * 180.02562 * 21 20 18 48 48 H 1.07999 * 125.89841 * 0.02562 * 27 26 2 49 49 H 1.09002 * 109.47391 * 90.01945 * 30 29 28 50 50 H 1.09001 * 109.46813 * 330.02001 * 30 29 28 51 51 H 1.09004 * 109.47041 * 210.02128 * 30 29 28 52 52 H 1.07999 * 126.12286 * 179.73805 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4765 6 8 1.0111 1.0870 -2.3632 7 7 1.9853 -0.3913 -3.7001 8 6 2.7382 -1.6201 -3.8399 9 6 4.2278 -1.3693 -3.9572 10 6 4.6379 -0.8285 -5.3097 11 1 5.7223 -0.7609 -5.3971 12 6 4.0461 -1.7923 -6.3655 13 6 2.6432 -1.2228 -6.6600 14 6 2.6242 0.1405 -6.0143 15 1 2.3943 0.8549 -6.8049 16 6 1.5858 0.3761 -4.9233 17 7 3.9952 0.4958 -5.5170 18 6 4.5389 1.7352 -5.3090 19 1 5.5538 1.8265 -4.9510 20 6 3.7854 2.8743 -5.5572 21 7 2.5485 2.7630 -5.9929 22 14 4.5275 4.5650 -5.2741 23 1 5.7242 4.7314 -6.1374 24 1 3.5256 5.6080 -5.6113 25 1 4.9225 4.6998 -3.8489 26 6 2.0324 -0.7105 1.2304 27 6 1.7739 -2.0411 1.5755 28 7 2.3783 -2.2944 2.7080 29 7 3.0410 -1.1311 3.1202 30 6 3.8408 -0.9805 4.3383 31 6 2.8081 -0.1722 2.1997 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1263 -0.7995 -1.2057 36 1 1.6054 -1.7198 -1.2952 37 1 2.5530 -2.2493 -2.9694 38 1 2.3966 -2.1445 -4.7323 39 1 4.5238 -0.6539 -3.1899 40 1 4.7554 -2.3070 -3.7826 41 1 4.6560 -1.7886 -7.2689 42 1 3.9702 -2.8013 -5.9602 43 1 2.4898 -1.1337 -7.7355 44 1 1.8765 -1.8612 -6.2211 45 1 0.6088 0.0345 -5.2652 46 1 1.5400 1.4394 -4.6879 47 1 2.0220 3.5590 -6.1668 48 1 1.1789 -2.7391 1.0052 49 1 4.8784 -1.2385 4.1259 50 1 3.4527 -1.6430 5.1120 51 1 3.7865 0.0521 4.6833 52 1 3.1774 0.8423 2.2296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045819614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:30 Heat of formation + Delta-G solvation = 86.064799 kcal Electronic energy + Delta-G solvation = -32435.034062 eV Core-core repulsion = 28437.637994 eV Total energy + Delta-G solvation = -3997.396068 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.28415 -39.82707 -38.12759 -35.07708 -34.12981 -32.92620 -32.74439 -31.54785 -29.68780 -29.39289 -28.06993 -26.61674 -26.57990 -25.70763 -23.73774 -22.69580 -21.84011 -21.10409 -19.90348 -19.31215 -19.21630 -17.88454 -17.07310 -16.73612 -16.09578 -15.53950 -15.41112 -14.95864 -14.74829 -14.43972 -14.35875 -14.13013 -13.87547 -13.39909 -13.14034 -13.07900 -12.83404 -12.63268 -12.54911 -12.51064 -12.30399 -11.92150 -11.74948 -11.47453 -11.27874 -11.23956 -11.11948 -10.98662 -10.79784 -10.74333 -10.71386 -10.66243 -10.28686 -10.18542 -9.90244 -9.65424 -9.47256 -9.46835 -9.37967 -8.87032 -8.55113 -8.33703 -7.63209 -6.83792 -5.67279 -3.03270 1.83664 2.44545 2.78642 3.43287 3.45796 3.48160 3.49784 3.90940 4.38930 4.50199 4.79832 4.90645 4.98394 5.08382 5.14717 5.21718 5.30417 5.31553 5.42115 5.46661 5.55374 5.58330 5.63222 5.70652 5.72737 5.80669 5.83285 5.90786 5.93085 5.99024 6.16716 6.19068 6.25057 6.28893 6.37511 6.49192 6.50644 6.53892 6.62340 6.64053 6.74180 6.75883 6.83946 6.93835 7.02774 7.09159 7.33227 7.52775 7.64195 7.69981 7.91076 8.26352 8.40939 9.06547 9.17964 9.79796 10.54277 11.41364 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.003412 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.561541 B = 8204.253493 C = 9005.578506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.004 3.996 3 H 0.081 0.919 4 C -0.127 4.127 5 C 0.509 3.491 6 O -0.547 6.547 7 N -0.592 5.592 8 C 0.109 3.891 9 C -0.150 4.150 10 C 0.150 3.850 11 H 0.058 0.942 12 C -0.130 4.130 13 C -0.123 4.123 14 C 0.141 3.859 15 H 0.096 0.904 16 C 0.127 3.873 17 N -0.579 5.579 18 C -0.210 4.210 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.918 5.918 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.288 1.288 26 C -0.220 4.220 27 C 0.055 3.945 28 N -0.303 5.303 29 N -0.382 5.382 30 C 0.104 3.896 31 C 0.053 3.947 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.029 0.971 46 H 0.126 0.874 47 H 0.254 0.746 48 H 0.180 0.820 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.085 0.915 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 -11.244 12.200 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 H 0.099 0.901 4 C -0.168 4.168 5 C 0.296 3.704 6 O -0.426 6.426 7 N -0.324 5.324 8 C -0.016 4.016 9 C -0.191 4.191 10 C 0.042 3.958 11 H 0.077 0.923 12 C -0.169 4.169 13 C -0.161 4.161 14 C 0.035 3.965 15 H 0.114 0.886 16 C 0.006 3.994 17 N -0.302 5.302 18 C -0.337 4.337 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.214 1.214 26 C -0.231 4.231 27 C -0.131 4.131 28 N -0.124 5.124 29 N -0.165 5.165 30 C -0.038 4.038 31 C -0.092 4.092 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.047 0.953 46 H 0.144 0.856 47 H 0.064 0.936 48 H 0.197 0.803 49 H 0.091 0.909 50 H 0.104 0.896 51 H 0.104 0.896 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.087 -11.242 13.250 17.377 hybrid contribution 0.443 1.363 -0.327 1.470 sum 0.529 -9.879 12.923 16.275 Atomic orbital electron populations 1.21903 0.94348 1.01071 1.02786 1.19146 0.95846 0.98331 0.88271 0.90073 1.21717 1.02423 0.99623 0.93012 1.20426 0.79873 0.85606 0.84470 1.90615 1.41159 1.24530 1.86266 1.48456 1.52930 1.24190 1.06835 1.20968 0.92166 0.86709 1.01720 1.22043 0.95961 0.99771 1.01288 1.21096 0.96003 0.87110 0.91586 0.92346 1.22676 0.96817 0.98065 0.99357 1.21931 0.96542 0.97755 0.99918 1.20885 0.85782 0.93541 0.96286 0.88625 1.23169 0.94236 0.99557 0.82433 1.45347 1.09207 0.99086 1.76574 1.18880 0.96615 0.80894 1.37336 0.90518 1.24652 0.96192 0.97470 1.01941 1.69679 1.08131 1.27531 1.51262 0.86185 0.77717 0.84023 0.77741 1.21454 1.21577 1.21442 1.20178 1.07409 0.95158 1.00363 1.23717 0.99180 0.96211 0.93995 1.77305 1.13597 1.06130 1.15395 1.48400 1.40459 1.08327 1.19268 1.21802 0.94575 1.03389 0.84003 1.22377 1.00330 0.95669 0.90824 0.93471 0.90190 0.93680 0.89667 0.89900 0.92370 0.90385 0.92423 0.92981 0.92498 0.92158 0.92314 0.92257 0.95265 0.85627 0.93580 0.80332 0.90907 0.89554 0.89631 0.81044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.82 37.16 0.33 -1.69 16 2 C 0.00 0.06 2.40 -91.77 -0.22 -0.16 16 3 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 4 C -0.13 -1.90 3.51 -27.88 -0.10 -2.00 16 5 C 0.51 9.97 7.41 -10.99 -0.08 9.89 16 6 O -0.55 -12.70 13.62 5.56 0.08 -12.62 16 7 N -0.59 -11.57 2.86 -173.50 -0.50 -12.07 16 8 C 0.11 1.73 4.98 -5.71 -0.03 1.71 16 9 C -0.15 -2.50 5.01 -28.33 -0.14 -2.64 16 10 C 0.15 2.85 4.02 -66.68 -0.27 2.59 16 11 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 12 C -0.13 -2.09 6.02 -25.18 -0.15 -2.24 16 13 C -0.12 -2.14 5.78 -27.15 -0.16 -2.30 16 14 C 0.14 3.11 2.00 -67.26 -0.13 2.98 16 15 H 0.10 2.47 6.21 -51.93 -0.32 2.15 16 16 C 0.13 2.86 5.76 -2.47 -0.01 2.85 16 17 N -0.58 -13.71 2.77 -155.17 -0.43 -14.14 16 18 C -0.21 -5.61 10.43 -15.06 -0.16 -5.76 16 19 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 21 N -0.92 -25.71 8.33 55.49 0.46 -25.25 16 22 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 C -0.22 -2.79 4.80 -105.06 -0.50 -3.30 16 27 C 0.06 0.68 11.54 -17.36 -0.20 0.48 16 28 N -0.30 -4.01 12.58 30.63 0.39 -3.62 16 29 N -0.38 -4.31 4.01 -68.16 -0.27 -4.58 16 30 C 0.10 0.70 11.47 59.85 0.69 1.39 16 31 C 0.05 0.61 11.38 -17.22 -0.20 0.42 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.34 5.95 -51.93 -0.31 1.03 16 34 H 0.04 0.55 8.02 -51.93 -0.42 0.14 16 35 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 36 H 0.08 1.05 7.40 -51.93 -0.38 0.67 16 37 H 0.06 0.78 6.20 -51.93 -0.32 0.46 16 38 H 0.08 1.18 3.93 -51.93 -0.20 0.98 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.80 7.38 -51.93 -0.38 0.42 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.92 6.15 -51.93 -0.32 0.61 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.13 3.43 5.39 -51.93 -0.28 3.15 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 52 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -32.59 392.21 -9.22 -41.81 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.39 Total: 5.41 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.43 Total: 1.92 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.35 Total: -59.66 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.59 -9.22 -41.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045819614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.873 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds