Wall clock time and date at job start Wed Apr 1 2020 05:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.47002 * 2 1 4 4 C 1.53003 * 109.46709 * 240.00075 * 2 1 3 5 5 C 1.50694 * 109.47015 * 65.00402 * 4 2 1 6 6 O 1.21280 * 120.00220 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00111 * 179.97438 * 5 4 2 8 8 C 1.44789 * 120.17697 * 359.97438 * 7 5 4 9 9 C 1.51513 * 112.22639 * 264.55409 * 8 7 5 10 10 C 1.51315 * 113.25134 * 285.36861 * 9 8 7 11 11 H 1.09000 * 111.31232 * 186.10620 * 10 9 8 12 12 C 1.54724 * 106.48050 * 307.66231 * 10 9 8 13 13 C 1.54238 * 104.37047 * 89.11976 * 12 10 9 14 14 C 1.50866 * 105.27419 * 11.56213 * 13 12 10 15 15 H 1.09002 * 106.52796 * 122.53039 * 14 13 12 16 16 C 1.49815 * 120.18217 * 179.72729 * 7 5 4 17 17 N 1.48653 * 109.01746 * 62.92115 * 10 9 8 18 18 C 1.36930 * 127.84497 * 97.34052 * 17 10 9 19 19 H 1.08001 * 119.99788 * 359.97438 * 18 17 10 20 20 C 1.38815 * 120.00509 * 180.02562 * 18 17 10 21 21 N 1.31618 * 119.99391 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00271 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47721 * 59.99388 * 22 20 18 24 24 H 1.48496 * 109.47173 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.46587 * 299.99217 * 22 20 18 26 26 C 1.50696 * 109.46846 * 120.00416 * 2 1 3 27 27 C 1.39868 * 126.04146 * 60.02398 * 26 2 1 28 28 N 1.30844 * 108.20218 * 179.97438 * 27 26 2 29 29 N 1.40086 * 108.20537 * 0.02562 * 28 27 26 30 30 C 1.46499 * 126.03748 * 180.02562 * 29 28 27 31 31 C 1.34949 * 107.92189 * 0.25805 * 29 28 27 32 32 H 1.08999 * 109.46847 * 299.99970 * 1 2 3 33 33 H 1.09000 * 109.47022 * 59.99881 * 1 2 3 34 34 H 1.08997 * 109.47002 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.46685 * 184.99832 * 4 2 1 36 36 H 1.08995 * 109.47262 * 304.99861 * 4 2 1 37 37 H 1.08998 * 108.93433 * 25.26263 * 8 7 5 38 38 H 1.08999 * 108.92924 * 143.84857 * 8 7 5 39 39 H 1.08997 * 108.72972 * 46.34431 * 9 8 7 40 40 H 1.08998 * 108.72583 * 164.51789 * 9 8 7 41 41 H 1.09006 * 110.45064 * 207.83979 * 12 10 9 42 42 H 1.08997 * 110.45610 * 330.39645 * 12 10 9 43 43 H 1.09004 * 110.27885 * 130.50488 * 13 12 10 44 44 H 1.08999 * 110.28224 * 252.51306 * 13 12 10 45 45 H 1.09006 * 109.54621 * 270.54954 * 16 7 5 46 46 H 1.08999 * 109.55071 * 30.82614 * 16 7 5 47 47 H 0.97006 * 119.99878 * 180.02562 * 21 20 18 48 48 H 1.07999 * 125.89841 * 0.02562 * 27 26 2 49 49 H 1.09002 * 109.47391 * 90.01945 * 30 29 28 50 50 H 1.09001 * 109.46813 * 330.02001 * 30 29 28 51 51 H 1.09004 * 109.47041 * 210.02128 * 30 29 28 52 52 H 1.07999 * 126.12286 * 179.73805 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4765 6 8 1.0111 1.0870 -2.3632 7 7 1.9853 -0.3913 -3.7001 8 6 2.7382 -1.6201 -3.8399 9 6 4.2278 -1.3693 -3.9572 10 6 4.6379 -0.8285 -5.3097 11 1 5.7223 -0.7609 -5.3971 12 6 4.0461 -1.7923 -6.3655 13 6 2.6432 -1.2228 -6.6600 14 6 2.6242 0.1405 -6.0143 15 1 2.3943 0.8549 -6.8049 16 6 1.5858 0.3761 -4.9233 17 7 3.9952 0.4958 -5.5170 18 6 4.5389 1.7352 -5.3090 19 1 5.5538 1.8265 -4.9510 20 6 3.7854 2.8743 -5.5572 21 7 2.5485 2.7630 -5.9929 22 14 4.5275 4.5650 -5.2741 23 1 5.7242 4.7314 -6.1374 24 1 3.5256 5.6080 -5.6113 25 1 4.9225 4.6998 -3.8489 26 6 2.0324 -0.7105 1.2304 27 6 1.7739 -2.0411 1.5755 28 7 2.3783 -2.2944 2.7080 29 7 3.0410 -1.1311 3.1202 30 6 3.8408 -0.9805 4.3383 31 6 2.8081 -0.1722 2.1997 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1263 -0.7995 -1.2057 36 1 1.6054 -1.7198 -1.2952 37 1 2.5530 -2.2493 -2.9694 38 1 2.3966 -2.1445 -4.7323 39 1 4.5238 -0.6539 -3.1899 40 1 4.7554 -2.3070 -3.7826 41 1 4.6560 -1.7886 -7.2689 42 1 3.9702 -2.8013 -5.9602 43 1 2.4898 -1.1337 -7.7355 44 1 1.8765 -1.8612 -6.2211 45 1 0.6088 0.0345 -5.2652 46 1 1.5400 1.4394 -4.6879 47 1 2.0220 3.5590 -6.1668 48 1 1.1789 -2.7391 1.0052 49 1 4.8784 -1.2385 4.1259 50 1 3.4527 -1.6430 5.1120 51 1 3.7865 0.0521 4.6833 52 1 3.1774 0.8423 2.2296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045819614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:28 Heat of formation + Delta-G solvation = 66.671277 kcal Electronic energy + Delta-G solvation = -32435.875028 eV Core-core repulsion = 28437.637994 eV Total energy + Delta-G solvation = -3998.237034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.17774 -41.31879 -39.64091 -36.20664 -35.74532 -34.68748 -33.63197 -33.10977 -31.21334 -30.63181 -29.37173 -27.99302 -27.37825 -27.27494 -25.55232 -23.93012 -23.08070 -21.96756 -21.19378 -20.97885 -20.47170 -19.31396 -18.69188 -17.97471 -17.25624 -16.89379 -16.73699 -16.32221 -16.27530 -15.92092 -15.63372 -15.38279 -15.23035 -14.73351 -14.29288 -14.23278 -14.12969 -13.90373 -13.65121 -13.61003 -13.45832 -13.32569 -13.06443 -13.01696 -12.92526 -12.70324 -12.60255 -12.47317 -12.36207 -12.28215 -12.01672 -11.99845 -11.82992 -11.53166 -11.34541 -11.31142 -11.22875 -10.85428 -10.67166 -10.32032 -10.20393 -9.26381 -9.22239 -8.75491 -7.73551 -5.07723 0.97436 1.42671 1.45407 1.50537 1.72576 1.85068 1.96049 2.43047 2.52933 3.39832 3.59149 3.65569 3.86532 3.99640 4.01474 4.11900 4.14890 4.19877 4.30364 4.32393 4.37773 4.45268 4.48155 4.54237 4.63956 4.69097 4.70258 4.75222 4.79826 4.81655 4.86910 4.88872 4.95906 4.98371 5.08701 5.15776 5.21231 5.25869 5.30730 5.39059 5.42838 5.46870 5.52932 5.54601 5.66051 5.75910 5.77872 5.95654 6.05181 6.15241 6.35200 6.77262 6.91199 7.14559 7.56824 7.82753 8.59431 9.31464 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.003412 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.561541 B = 8204.253493 C = 9005.578506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.013 3.987 3 H 0.053 0.947 4 C -0.112 4.112 5 C 0.496 3.504 6 O -0.595 6.595 7 N -0.594 5.594 8 C 0.101 3.899 9 C -0.141 4.141 10 C 0.135 3.865 11 H 0.054 0.946 12 C -0.116 4.116 13 C -0.117 4.117 14 C 0.151 3.849 15 H 0.046 0.954 16 C 0.133 3.867 17 N -0.602 5.602 18 C -0.212 4.212 19 H 0.074 0.926 20 C -0.061 4.061 21 N -0.933 5.933 22 Si 0.961 3.039 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.291 1.291 26 C -0.235 4.235 27 C 0.054 3.946 28 N -0.330 5.330 29 N -0.382 5.382 30 C 0.094 3.906 31 C 0.053 3.947 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.027 0.973 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.034 0.966 46 H 0.072 0.928 47 H 0.240 0.760 48 H 0.199 0.801 49 H 0.084 0.916 50 H 0.092 0.908 51 H 0.109 0.891 52 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 -14.862 13.621 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.007 4.007 3 H 0.072 0.928 4 C -0.151 4.151 5 C 0.286 3.714 6 O -0.477 6.477 7 N -0.325 5.325 8 C -0.021 4.021 9 C -0.182 4.182 10 C 0.029 3.971 11 H 0.072 0.928 12 C -0.154 4.154 13 C -0.155 4.155 14 C 0.045 3.955 15 H 0.064 0.936 16 C 0.010 3.990 17 N -0.326 5.326 18 C -0.342 4.342 19 H 0.092 0.908 20 C -0.254 4.254 21 N -0.582 5.582 22 Si 0.792 3.208 23 H -0.203 1.203 24 H -0.226 1.226 25 H -0.218 1.218 26 C -0.247 4.247 27 C -0.131 4.131 28 N -0.152 5.152 29 N -0.164 5.164 30 C -0.046 4.046 31 C -0.093 4.093 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.046 0.954 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.050 0.950 48 H 0.216 0.784 49 H 0.102 0.898 50 H 0.111 0.889 51 H 0.127 0.873 52 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.294 -14.929 14.687 20.982 hybrid contribution 0.136 2.510 -0.717 2.614 sum 1.429 -12.419 13.970 18.747 Atomic orbital electron populations 1.21806 0.94411 1.01931 1.01277 1.18946 0.95732 0.97032 0.89002 0.92829 1.21673 1.02676 1.00284 0.90503 1.21350 0.78967 0.85395 0.85710 1.90601 1.43226 1.26815 1.87012 1.48507 1.53141 1.25047 1.05839 1.21288 0.91123 0.85394 1.04325 1.21930 0.96887 1.00897 0.98451 1.21435 0.95840 0.85599 0.94258 0.92791 1.22626 0.95087 0.99073 0.98655 1.21863 0.98559 0.95187 0.99870 1.20840 0.84944 0.95188 0.94551 0.93566 1.22661 0.94901 0.97251 0.84216 1.45540 1.10379 0.99955 1.76726 1.19098 0.96480 0.82680 1.35893 0.90818 1.25282 0.96784 1.00138 1.03218 1.69937 1.08836 1.26879 1.52595 0.85401 0.77082 0.81010 0.77328 1.20335 1.22571 1.21811 1.20003 1.08820 0.95631 1.00221 1.24017 0.99021 0.96198 0.93871 1.77262 1.14552 1.07364 1.15980 1.48742 1.40067 1.07613 1.20015 1.22152 0.94570 1.05195 0.82674 1.22728 0.99571 0.96496 0.90552 0.93100 0.93489 0.91549 0.89215 0.86586 0.88566 0.88740 0.95397 0.88475 0.92178 0.87788 0.91899 0.89581 0.94797 0.90962 0.95009 0.78384 0.89798 0.88923 0.87270 0.79236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.82 71.99 0.64 -3.15 16 2 C 0.01 0.36 2.40 -11.54 -0.03 0.34 16 3 H 0.05 1.76 7.92 -2.39 -0.02 1.74 16 4 C -0.11 -3.12 3.51 29.85 0.10 -3.01 16 5 C 0.50 19.52 7.41 87.65 0.65 20.17 16 6 O -0.59 -29.04 13.62 -3.03 -0.04 -29.08 16 7 N -0.59 -22.81 2.86 -821.23 -2.35 -25.16 16 8 C 0.10 2.85 4.98 86.21 0.43 3.27 16 9 C -0.14 -4.22 5.01 29.56 0.15 -4.07 16 10 C 0.14 4.83 4.02 44.61 0.18 5.01 16 11 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 12 C -0.12 -3.24 6.02 31.60 0.19 -3.05 16 13 C -0.12 -3.77 5.78 30.32 0.18 -3.60 16 14 C 0.15 6.73 2.00 43.41 0.09 6.82 16 15 H 0.05 2.51 6.21 -2.39 -0.01 2.50 16 16 C 0.13 6.16 5.76 85.55 0.49 6.65 16 17 N -0.60 -28.80 2.77 -644.85 -1.79 -30.59 16 18 C -0.21 -11.71 10.43 84.04 0.88 -10.84 16 19 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 21 N -0.93 -55.57 8.33 21.65 0.18 -55.39 16 22 Si 0.96 47.69 29.55 68.60 2.03 49.72 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 25 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 26 C -0.24 -5.53 4.80 -20.15 -0.10 -5.63 16 27 C 0.05 1.20 11.54 85.23 0.98 2.18 16 28 N -0.33 -7.94 12.58 -57.02 -0.72 -8.66 16 29 N -0.38 -7.72 4.01 -369.56 -1.48 -9.21 16 30 C 0.09 1.03 11.47 127.77 1.47 2.49 16 31 C 0.05 1.12 11.38 83.54 0.95 2.07 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.62 5.95 -2.39 -0.01 1.61 16 34 H 0.07 1.51 8.02 -2.39 -0.02 1.49 16 35 H 0.09 2.47 8.11 -2.39 -0.02 2.45 16 36 H 0.12 2.47 7.40 -2.39 -0.02 2.45 16 37 H 0.10 2.03 6.20 -2.39 -0.01 2.01 16 38 H 0.09 2.38 3.93 -2.39 -0.01 2.37 16 39 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.10 2.07 7.38 -2.39 -0.02 2.06 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.09 2.34 6.15 -2.39 -0.01 2.32 16 45 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.07 4.21 5.39 -2.39 -0.01 4.20 16 47 H 0.24 14.42 8.31 -92.70 -0.77 13.65 16 48 H 0.20 3.29 8.06 -2.91 -0.02 3.26 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 52 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -77.92 392.21 4.45 -73.47 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.91 Total: 22.26 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 7.71 Total: 12.64 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -6.16 Total: -129.00 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.04 Total: -29.08 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -77.92 4.45 -73.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045819614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.138 kcal (2) G-P(sol) polarization free energy of solvation -77.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds