Wall clock time and date at job start Wed Apr 1 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47461 * 2 1 4 4 C 1.50701 * 109.47162 * 119.99318 * 2 1 3 5 5 O 1.21287 * 119.99958 * 114.58770 * 4 2 1 6 6 N 1.34780 * 120.00176 * 294.59224 * 4 2 1 7 7 C 1.47458 * 118.68406 * 355.20530 * 6 4 2 8 8 C 1.53993 * 112.21198 * 137.99708 * 7 6 4 9 9 C 1.50823 * 110.41736 * 319.23332 * 8 7 6 10 10 C 1.52853 * 109.44201 * 91.63542 * 9 8 7 11 11 C 1.46800 * 113.95215 * 275.86563 * 10 9 8 12 12 C 1.54730 * 112.84353 * 300.74642 * 11 10 9 13 13 C 1.54398 * 102.90711 * 273.43739 * 12 11 10 14 14 N 1.47060 * 107.28995 * 338.25338 * 13 12 11 15 15 C 1.36928 * 125.64287 * 178.89373 * 14 13 12 16 16 H 1.08000 * 120.00677 * 174.68299 * 15 14 13 17 17 C 1.38813 * 119.99938 * 354.68374 * 15 14 13 18 18 N 1.31622 * 119.99794 * 8.64633 * 17 15 14 19 19 Si 1.86800 * 120.00106 * 188.65026 * 17 15 14 20 20 H 1.48498 * 109.47166 * 94.96852 * 19 17 15 21 21 H 1.48506 * 109.47129 * 214.96699 * 19 17 15 22 22 H 1.48498 * 109.47237 * 334.96776 * 19 17 15 23 23 C 1.47528 * 108.71727 * 358.89383 * 14 13 12 24 24 C 1.44732 * 118.68710 * 175.23142 * 6 4 2 25 25 N 1.46500 * 109.47412 * 239.99538 * 2 1 3 26 26 C 1.34940 * 126.03735 * 325.00177 * 25 2 1 27 27 C 1.35316 * 107.74758 * 179.97438 * 26 25 2 28 28 C 1.39874 * 107.92036 * 359.97438 * 27 26 25 29 29 N 1.30840 * 108.20154 * 359.74587 * 28 27 26 30 30 H 1.09004 * 109.47009 * 51.18949 * 1 2 3 31 31 H 1.09000 * 109.47218 * 171.18097 * 1 2 3 32 32 H 1.08995 * 109.47418 * 291.18514 * 1 2 3 33 33 H 1.09001 * 108.93204 * 17.29572 * 7 6 4 34 34 H 1.08996 * 108.93495 * 258.70501 * 7 6 4 35 35 H 1.08998 * 109.31573 * 198.94697 * 8 7 6 36 36 H 1.09003 * 109.31340 * 79.51915 * 8 7 6 37 37 H 1.08999 * 109.47248 * 331.64544 * 9 8 7 38 38 H 1.08998 * 109.47772 * 211.62704 * 9 8 7 39 39 H 1.09000 * 108.58243 * 154.70489 * 10 9 8 40 40 H 1.09006 * 108.47321 * 36.93635 * 10 9 8 41 41 H 1.09001 * 110.72265 * 155.08346 * 12 11 10 42 42 H 1.09000 * 110.72797 * 31.79098 * 12 11 10 43 43 H 1.09004 * 109.88050 * 218.83255 * 13 12 11 44 44 H 1.08994 * 109.87629 * 97.68030 * 13 12 11 45 45 H 0.97003 * 119.99748 * 180.02562 * 18 17 15 46 46 H 1.09003 * 110.36633 * 142.58222 * 23 14 13 47 47 H 1.09002 * 110.37256 * 264.92295 * 23 14 13 48 48 H 1.08993 * 109.52616 * 150.55547 * 24 6 4 49 49 H 1.09004 * 109.52459 * 30.35663 * 24 6 4 50 50 H 1.07995 * 126.12804 * 359.97438 * 26 25 2 51 51 H 1.07999 * 126.04486 * 180.02562 * 27 26 25 52 52 H 1.08000 * 125.89788 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.6465 -1.7505 1.1221 6 7 1.7989 -0.1896 2.4516 7 6 1.1441 1.1282 2.5459 8 6 0.0803 1.1714 3.6584 9 6 -0.7136 -0.1108 3.6774 10 6 -0.0588 -1.1004 4.6410 11 6 1.0407 -1.8712 4.0477 12 6 0.5967 -2.7055 2.8226 13 6 0.0911 -4.0163 3.4629 14 7 0.7122 -4.1215 4.7918 15 6 0.5047 -5.1325 5.6917 16 1 1.0741 -5.1644 6.6088 17 6 -0.4375 -6.1164 5.4252 18 7 -1.0084 -6.1773 4.2408 19 14 -0.8953 -7.3539 6.7475 20 1 -2.1074 -6.8851 7.4659 21 1 -1.1708 -8.6709 6.1189 22 1 0.2284 -7.4896 7.7088 23 6 1.5957 -2.9577 4.9949 24 6 2.2017 -0.9461 3.6180 25 7 2.0183 -0.6907 -1.1961 26 6 1.4402 -1.7560 -1.7893 27 6 2.1962 -2.0924 -2.8600 28 6 3.2729 -1.2018 -2.9236 29 7 3.1642 -0.3575 -1.9300 30 1 -0.3633 0.6441 -0.8008 31 1 -0.3633 -1.0155 -0.1576 32 1 -0.3634 0.3714 0.9581 33 1 0.6678 1.3554 1.5921 34 1 1.9009 1.8854 2.7505 35 1 -0.5933 2.0097 3.4808 36 1 0.5717 1.3054 4.6221 37 1 -0.7355 -0.5395 2.6755 38 1 -1.7318 0.0969 4.0062 39 1 -0.8197 -1.7961 4.9946 40 1 0.3276 -0.5456 5.4960 41 1 1.4415 -2.8998 2.1616 42 1 -0.2077 -2.2035 2.2849 43 1 0.3853 -4.8668 2.8479 44 1 -0.9939 -3.9858 3.5621 45 1 -1.6671 -6.8646 4.0547 46 1 1.5463 -2.6200 6.0301 47 1 2.6216 -3.2084 4.7251 48 1 2.4421 -0.2613 4.4311 49 1 3.0775 -1.5486 3.3768 50 1 0.5362 -2.2513 -1.4673 51 1 2.0021 -2.9045 -3.5450 52 1 4.0561 -1.2072 -3.6672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045917911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:59 Heat of formation + Delta-G solvation = 94.652675 kcal Electronic energy + Delta-G solvation = -33218.377109 eV Core-core repulsion = 29221.353439 eV Total energy + Delta-G solvation = -3997.023670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.53655 -40.61923 -38.31656 -36.42128 -34.81101 -33.58553 -32.87664 -30.67261 -30.07432 -29.61289 -28.61651 -27.48322 -26.14105 -24.71546 -24.40361 -23.38383 -21.51040 -21.11807 -20.55459 -20.07346 -19.25893 -18.25378 -17.52953 -17.31439 -16.74172 -15.85778 -15.68605 -15.21787 -14.93061 -14.56045 -14.48775 -14.20290 -14.05273 -13.72540 -13.61309 -13.43198 -13.11332 -12.88957 -12.80507 -12.68710 -12.52971 -12.44552 -12.02878 -11.91192 -11.76576 -11.46008 -11.34919 -10.97034 -10.90046 -10.78831 -10.70604 -10.62260 -10.32152 -10.10297 -10.01352 -9.98861 -9.72477 -9.61718 -9.56645 -9.31503 -8.56625 -8.54475 -8.39207 -6.74746 -5.66922 -2.97886 1.84229 2.29424 2.48191 2.90454 3.03283 3.42310 3.47629 3.49746 4.10457 4.30690 4.47087 4.50193 4.54713 4.74354 4.83147 4.92128 4.95726 5.01836 5.08071 5.17084 5.19707 5.29306 5.43870 5.49748 5.53556 5.56267 5.58084 5.65784 5.73447 5.80709 5.83261 5.94718 5.97011 6.05032 6.09081 6.15523 6.28607 6.35933 6.47075 6.54955 6.63269 6.66659 6.73389 6.77001 6.90593 6.94650 7.08453 7.28499 7.63941 7.70231 7.75152 7.90144 8.13265 8.32260 9.27978 9.88931 10.56946 11.45052 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.003603 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.025987 B = 7768.495021 C = 9077.788766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.145 3.855 3 H 0.121 0.879 4 C 0.498 3.502 5 O -0.506 6.506 6 N -0.594 5.594 7 C 0.093 3.907 8 C -0.131 4.131 9 C -0.119 4.119 10 C -0.094 4.094 11 C -0.080 4.080 12 C -0.144 4.144 13 C 0.182 3.818 14 N -0.602 5.602 15 C -0.227 4.227 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.149 3.851 24 C 0.127 3.873 25 N -0.354 5.354 26 C 0.075 3.925 27 C -0.277 4.277 28 C 0.047 3.953 29 N -0.298 5.298 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.040 0.960 45 H 0.250 0.750 46 H 0.037 0.963 47 H 0.019 0.981 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.171 0.829 51 H 0.147 0.853 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 19.358 -9.631 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.038 3.962 3 H 0.139 0.861 4 C 0.283 3.717 5 O -0.380 6.380 6 N -0.328 5.328 7 C -0.030 4.030 8 C -0.169 4.169 9 C -0.157 4.157 10 C -0.132 4.132 11 C -0.083 4.083 12 C -0.182 4.182 13 C 0.057 3.943 14 N -0.328 5.328 15 C -0.356 4.356 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.566 5.566 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.022 3.978 24 C 0.004 3.996 25 N -0.136 5.136 26 C -0.071 4.071 27 C -0.306 4.306 28 C -0.140 4.140 29 N -0.118 5.118 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.037 0.963 48 H 0.089 0.911 49 H 0.103 0.897 50 H 0.188 0.812 51 H 0.164 0.836 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.081 19.681 -8.939 21.715 hybrid contribution -0.683 -1.494 0.393 1.689 sum 1.397 18.187 -8.546 20.143 Atomic orbital electron populations 1.22468 0.90705 1.05075 1.05043 1.21069 0.96083 0.97329 0.81713 0.86110 1.20606 0.80617 0.85842 0.84646 1.90753 1.39016 1.22570 1.85703 1.47575 1.59621 1.19819 1.05739 1.22269 0.95836 0.84020 1.00846 1.21781 0.97210 0.98929 0.98945 1.21192 0.98542 0.94759 1.01174 1.20184 0.98205 0.97496 0.97293 1.20973 0.94860 0.94656 0.97769 1.23232 1.00609 0.97724 0.96600 1.21084 0.96264 0.91688 0.85216 1.44481 1.50786 1.22088 1.15476 1.19051 1.16562 1.01529 0.98421 0.90584 1.24790 0.99392 0.99154 0.96976 1.70015 1.31327 1.35705 1.19518 0.86166 0.78398 0.80615 0.81049 1.21737 1.21846 1.20689 1.21494 0.93437 0.87096 0.95735 1.21663 0.97891 0.94040 0.85996 1.48144 1.19823 1.24480 1.21175 1.22452 0.99859 0.90418 0.94346 1.21453 0.99254 1.06330 1.03550 1.23828 0.99034 0.94018 0.97092 1.77301 1.02427 1.24648 1.07454 0.90140 0.90261 0.88306 0.89676 0.91586 0.90797 0.91205 0.91338 0.91960 0.91009 0.92869 0.90085 0.93310 0.94615 0.94190 0.93915 0.94502 0.96327 0.91071 0.89661 0.81192 0.83553 0.80181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.46 37.15 0.31 -1.10 16 2 C 0.14 1.59 2.87 -69.09 -0.20 1.39 16 3 H 0.12 1.10 7.55 -51.93 -0.39 0.71 16 4 C 0.50 6.97 5.80 -10.98 -0.06 6.91 16 5 O -0.51 -9.54 13.30 5.55 0.07 -9.46 16 6 N -0.59 -7.11 2.07 -172.72 -0.36 -7.46 16 7 C 0.09 0.74 5.24 -3.00 -0.02 0.72 16 8 C -0.13 -1.04 5.68 -27.30 -0.16 -1.20 16 9 C -0.12 -1.32 5.40 -27.90 -0.15 -1.47 16 10 C -0.09 -1.40 4.13 -29.77 -0.12 -1.52 16 11 C -0.08 -1.35 0.49 -154.99 -0.08 -1.43 16 12 C -0.14 -2.79 4.42 -25.09 -0.11 -2.90 16 13 C 0.18 4.57 5.23 -3.00 -0.02 4.55 16 14 N -0.60 -15.65 3.40 -170.20 -0.58 -16.23 16 15 C -0.23 -6.46 10.26 -15.06 -0.15 -6.61 16 16 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 17 C -0.01 -0.20 5.47 -17.43 -0.10 -0.29 16 18 N -0.92 -27.52 10.38 55.49 0.58 -26.95 16 19 Si 0.91 22.46 29.56 -169.99 -5.03 17.43 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.15 3.12 6.19 -2.71 -0.02 3.11 16 24 C 0.13 1.80 4.47 -4.18 -0.02 1.78 16 25 N -0.35 -4.73 3.05 -56.00 -0.17 -4.90 16 26 C 0.08 0.95 10.48 -17.23 -0.18 0.77 16 27 C -0.28 -3.33 10.80 -40.01 -0.43 -3.77 16 28 C 0.05 0.58 12.03 -17.36 -0.21 0.37 16 29 N -0.30 -4.31 12.58 30.63 0.39 -3.92 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.72 6.71 -51.93 -0.35 0.37 16 32 H 0.10 0.70 3.97 -51.93 -0.21 0.49 16 33 H 0.09 0.52 3.93 -51.93 -0.20 0.32 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.58 7.34 -51.93 -0.38 0.20 16 37 H 0.07 0.81 4.08 -51.93 -0.21 0.60 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.32 8.02 -51.93 -0.42 0.91 16 40 H 0.05 0.72 7.40 -51.93 -0.38 0.33 16 41 H 0.08 1.72 5.00 -51.93 -0.26 1.46 16 42 H 0.05 0.86 6.11 -51.93 -0.32 0.54 16 43 H 0.04 1.03 7.58 -51.93 -0.39 0.63 16 44 H 0.04 1.10 7.33 -51.93 -0.38 0.71 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.04 0.74 8.04 -51.93 -0.42 0.33 16 47 H 0.02 0.41 7.64 -51.93 -0.40 0.01 16 48 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 49 H 0.09 1.43 6.82 -51.93 -0.35 1.07 16 50 H 0.17 1.84 7.06 -52.49 -0.37 1.47 16 51 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 52 H 0.18 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -35.72 380.60 -9.00 -44.73 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.94 Total: 1.71 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.70 Total: -0.69 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.14 Total: -59.46 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.46 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.72 -9.00 -44.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045917911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.379 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds