Wall clock time and date at job start Wed Apr 1 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47461 * 2 1 4 4 C 1.50701 * 109.47162 * 119.99318 * 2 1 3 5 5 O 1.21287 * 119.99958 * 114.58770 * 4 2 1 6 6 N 1.34780 * 120.00176 * 294.59224 * 4 2 1 7 7 C 1.47458 * 118.68406 * 355.20530 * 6 4 2 8 8 C 1.53993 * 112.21198 * 137.99708 * 7 6 4 9 9 C 1.50823 * 110.41736 * 319.23332 * 8 7 6 10 10 C 1.52853 * 109.44201 * 91.63542 * 9 8 7 11 11 C 1.46800 * 113.95215 * 275.86563 * 10 9 8 12 12 C 1.54730 * 112.84353 * 300.74642 * 11 10 9 13 13 C 1.54398 * 102.90711 * 273.43739 * 12 11 10 14 14 N 1.47060 * 107.28995 * 338.25338 * 13 12 11 15 15 C 1.36928 * 125.64287 * 178.89373 * 14 13 12 16 16 H 1.08000 * 120.00677 * 174.68299 * 15 14 13 17 17 C 1.38813 * 119.99938 * 354.68374 * 15 14 13 18 18 N 1.31622 * 119.99794 * 8.64633 * 17 15 14 19 19 Si 1.86800 * 120.00106 * 188.65026 * 17 15 14 20 20 H 1.48498 * 109.47166 * 94.96852 * 19 17 15 21 21 H 1.48506 * 109.47129 * 214.96699 * 19 17 15 22 22 H 1.48498 * 109.47237 * 334.96776 * 19 17 15 23 23 C 1.47528 * 108.71727 * 358.89383 * 14 13 12 24 24 C 1.44732 * 118.68710 * 175.23142 * 6 4 2 25 25 N 1.46500 * 109.47412 * 239.99538 * 2 1 3 26 26 C 1.34940 * 126.03735 * 325.00177 * 25 2 1 27 27 C 1.35316 * 107.74758 * 179.97438 * 26 25 2 28 28 C 1.39874 * 107.92036 * 359.97438 * 27 26 25 29 29 N 1.30840 * 108.20154 * 359.74587 * 28 27 26 30 30 H 1.09004 * 109.47009 * 51.18949 * 1 2 3 31 31 H 1.09000 * 109.47218 * 171.18097 * 1 2 3 32 32 H 1.08995 * 109.47418 * 291.18514 * 1 2 3 33 33 H 1.09001 * 108.93204 * 17.29572 * 7 6 4 34 34 H 1.08996 * 108.93495 * 258.70501 * 7 6 4 35 35 H 1.08998 * 109.31573 * 198.94697 * 8 7 6 36 36 H 1.09003 * 109.31340 * 79.51915 * 8 7 6 37 37 H 1.08999 * 109.47248 * 331.64544 * 9 8 7 38 38 H 1.08998 * 109.47772 * 211.62704 * 9 8 7 39 39 H 1.09000 * 108.58243 * 154.70489 * 10 9 8 40 40 H 1.09006 * 108.47321 * 36.93635 * 10 9 8 41 41 H 1.09001 * 110.72265 * 155.08346 * 12 11 10 42 42 H 1.09000 * 110.72797 * 31.79098 * 12 11 10 43 43 H 1.09004 * 109.88050 * 218.83255 * 13 12 11 44 44 H 1.08994 * 109.87629 * 97.68030 * 13 12 11 45 45 H 0.97003 * 119.99748 * 180.02562 * 18 17 15 46 46 H 1.09003 * 110.36633 * 142.58222 * 23 14 13 47 47 H 1.09002 * 110.37256 * 264.92295 * 23 14 13 48 48 H 1.08993 * 109.52616 * 150.55547 * 24 6 4 49 49 H 1.09004 * 109.52459 * 30.35663 * 24 6 4 50 50 H 1.07995 * 126.12804 * 359.97438 * 26 25 2 51 51 H 1.07999 * 126.04486 * 180.02562 * 27 26 25 52 52 H 1.08000 * 125.89788 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.6465 -1.7505 1.1221 6 7 1.7989 -0.1896 2.4516 7 6 1.1441 1.1282 2.5459 8 6 0.0803 1.1714 3.6584 9 6 -0.7136 -0.1108 3.6774 10 6 -0.0588 -1.1004 4.6410 11 6 1.0407 -1.8712 4.0477 12 6 0.5967 -2.7055 2.8226 13 6 0.0911 -4.0163 3.4629 14 7 0.7122 -4.1215 4.7918 15 6 0.5047 -5.1325 5.6917 16 1 1.0741 -5.1644 6.6088 17 6 -0.4375 -6.1164 5.4252 18 7 -1.0084 -6.1773 4.2408 19 14 -0.8953 -7.3539 6.7475 20 1 -2.1074 -6.8851 7.4659 21 1 -1.1708 -8.6709 6.1189 22 1 0.2284 -7.4896 7.7088 23 6 1.5957 -2.9577 4.9949 24 6 2.2017 -0.9461 3.6180 25 7 2.0183 -0.6907 -1.1961 26 6 1.4402 -1.7560 -1.7893 27 6 2.1962 -2.0924 -2.8600 28 6 3.2729 -1.2018 -2.9236 29 7 3.1642 -0.3575 -1.9300 30 1 -0.3633 0.6441 -0.8008 31 1 -0.3633 -1.0155 -0.1576 32 1 -0.3634 0.3714 0.9581 33 1 0.6678 1.3554 1.5921 34 1 1.9009 1.8854 2.7505 35 1 -0.5933 2.0097 3.4808 36 1 0.5717 1.3054 4.6221 37 1 -0.7355 -0.5395 2.6755 38 1 -1.7318 0.0969 4.0062 39 1 -0.8197 -1.7961 4.9946 40 1 0.3276 -0.5456 5.4960 41 1 1.4415 -2.8998 2.1616 42 1 -0.2077 -2.2035 2.2849 43 1 0.3853 -4.8668 2.8479 44 1 -0.9939 -3.9858 3.5621 45 1 -1.6671 -6.8646 4.0547 46 1 1.5463 -2.6200 6.0301 47 1 2.6216 -3.2084 4.7251 48 1 2.4421 -0.2613 4.4311 49 1 3.0775 -1.5486 3.3768 50 1 0.5362 -2.2513 -1.4673 51 1 2.0021 -2.9045 -3.5450 52 1 4.0561 -1.2072 -3.6672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045917911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:57 Heat of formation + Delta-G solvation = 71.725808 kcal Electronic energy + Delta-G solvation = -33219.371293 eV Core-core repulsion = 29221.353439 eV Total energy + Delta-G solvation = -3998.017853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.52856 -41.69230 -39.68570 -37.68081 -35.88718 -34.86603 -34.27974 -32.37905 -31.04331 -30.69777 -30.26903 -28.64767 -27.49049 -25.99711 -25.56134 -24.85396 -22.59611 -22.04868 -21.99252 -21.40753 -20.27150 -19.66307 -18.71316 -18.47410 -18.20300 -17.19435 -16.77265 -16.55772 -16.28715 -15.98553 -15.64652 -15.40302 -15.11783 -14.97368 -14.68332 -14.48974 -14.43253 -14.09158 -13.94090 -13.86531 -13.68110 -13.48835 -13.29079 -13.12664 -12.93187 -12.82819 -12.72309 -12.68509 -12.56120 -12.05174 -12.03677 -11.90726 -11.75904 -11.68111 -11.59628 -11.25884 -11.18584 -11.11939 -10.91876 -10.69068 -10.31742 -9.56296 -9.48482 -8.90857 -7.88250 -5.22396 0.88137 1.41714 1.43350 1.44291 1.45764 1.53365 1.98112 2.09201 2.47335 3.24759 3.29450 3.50701 3.54468 3.67655 3.75046 3.88502 3.96902 4.02216 4.03582 4.09766 4.14450 4.30484 4.40397 4.44302 4.47526 4.57417 4.61608 4.65428 4.69864 4.73801 4.75424 4.84465 4.87151 4.87331 5.00484 5.03704 5.12234 5.17118 5.22279 5.22860 5.31853 5.40095 5.43312 5.50096 5.59190 5.64065 5.72532 5.77027 5.78990 6.03627 6.16452 6.32829 6.75982 7.07135 7.10873 7.75417 8.42320 9.22977 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.003603 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.025987 B = 7768.495021 C = 9077.788766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.145 3.855 3 H 0.146 0.854 4 C 0.492 3.508 5 O -0.566 6.566 6 N -0.588 5.588 7 C 0.084 3.916 8 C -0.123 4.123 9 C -0.114 4.114 10 C -0.092 4.092 11 C -0.062 4.062 12 C -0.122 4.122 13 C 0.196 3.804 14 N -0.622 5.622 15 C -0.246 4.246 16 H 0.081 0.919 17 C -0.065 4.065 18 N -0.950 5.950 19 Si 0.978 3.022 20 H -0.283 1.283 21 H -0.296 1.296 22 H -0.268 1.268 23 C 0.141 3.859 24 C 0.138 3.862 25 N -0.362 5.362 26 C 0.059 3.941 27 C -0.286 4.286 28 C 0.042 3.958 29 N -0.330 5.330 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.068 0.932 43 H -0.016 1.016 44 H 0.009 0.991 45 H 0.246 0.754 46 H 0.048 0.952 47 H 0.009 0.991 48 H 0.105 0.895 49 H 0.055 0.945 50 H 0.181 0.819 51 H 0.165 0.835 52 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 22.951 -9.235 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.039 3.961 3 H 0.163 0.837 4 C 0.279 3.721 5 O -0.444 6.444 6 N -0.320 5.320 7 C -0.036 4.036 8 C -0.161 4.161 9 C -0.152 4.152 10 C -0.129 4.129 11 C -0.064 4.064 12 C -0.160 4.160 13 C 0.070 3.930 14 N -0.348 5.348 15 C -0.374 4.374 16 H 0.099 0.901 17 C -0.258 4.258 18 N -0.599 5.599 19 Si 0.806 3.194 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.192 1.192 23 C 0.015 3.985 24 C 0.014 3.986 25 N -0.144 5.144 26 C -0.087 4.087 27 C -0.315 4.315 28 C -0.144 4.144 29 N -0.151 5.151 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.002 0.998 44 H 0.027 0.973 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.026 0.974 48 H 0.123 0.877 49 H 0.073 0.927 50 H 0.198 0.802 51 H 0.182 0.818 52 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.626 23.347 -8.518 24.906 hybrid contribution -0.492 -2.661 0.282 2.721 sum 1.133 20.686 -8.236 22.294 Atomic orbital electron populations 1.22505 0.88380 1.04952 1.06861 1.21321 0.97694 0.97577 0.79480 0.83690 1.21272 0.79632 0.85191 0.86022 1.90732 1.41744 1.25308 1.86632 1.47662 1.59118 1.20867 1.04330 1.22671 0.96643 0.81940 1.02395 1.21760 0.97215 0.97932 0.99178 1.21154 0.99392 0.95289 0.99327 1.20196 0.96226 0.97459 0.99039 1.20859 0.96581 0.94023 0.94966 1.22969 1.00342 0.95423 0.97236 1.20774 0.94459 0.92836 0.84884 1.44788 1.51419 1.23189 1.15436 1.19477 1.16656 1.02362 0.98953 0.90099 1.25680 0.99582 1.01437 0.99094 1.70252 1.31817 1.36409 1.21437 0.85064 0.78365 0.77612 0.78345 1.21011 1.22252 1.19247 1.21717 0.92202 0.86988 0.97556 1.21369 0.95228 0.94158 0.87875 1.48359 1.19619 1.24801 1.21617 1.22806 1.00511 0.90648 0.94721 1.21811 0.99136 1.06765 1.03798 1.24376 0.99572 0.93368 0.97076 1.77223 1.03405 1.26017 1.08497 0.87651 0.91720 0.86731 0.87342 0.88938 0.87228 0.90688 0.92180 0.90931 0.95372 0.90757 0.91657 0.91337 0.99791 0.97297 0.94494 0.93362 0.97366 0.87710 0.92683 0.80217 0.81779 0.77423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.46 71.98 0.61 -1.65 16 2 C 0.15 2.89 2.87 44.24 0.13 3.01 16 3 H 0.15 2.14 7.55 -2.38 -0.02 2.12 16 4 C 0.49 13.27 5.80 87.66 0.51 13.78 16 5 O -0.57 -21.93 13.30 -3.05 -0.04 -21.97 16 6 N -0.59 -12.63 2.07 -818.75 -1.69 -14.32 16 7 C 0.08 0.91 5.24 86.53 0.45 1.37 16 8 C -0.12 -1.29 5.68 30.22 0.17 -1.12 16 9 C -0.11 -2.16 5.40 29.84 0.16 -2.00 16 10 C -0.09 -2.58 4.13 28.62 0.12 -2.47 16 11 C -0.06 -2.09 0.49 -52.49 -0.03 -2.11 16 12 C -0.12 -4.93 4.42 31.66 0.14 -4.79 16 13 C 0.20 10.53 5.23 86.75 0.45 10.98 16 14 N -0.62 -34.02 3.40 -692.38 -2.35 -36.38 16 15 C -0.25 -14.48 10.26 84.04 0.86 -13.62 16 16 H 0.08 4.56 7.84 -2.91 -0.02 4.53 16 17 C -0.06 -3.86 5.47 84.86 0.46 -3.40 16 18 N -0.95 -59.99 10.38 21.65 0.22 -59.77 16 19 Si 0.98 47.40 29.56 68.60 2.03 49.43 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 C 0.14 6.08 6.19 86.68 0.54 6.61 16 24 C 0.14 3.72 4.47 87.23 0.39 4.11 16 25 N -0.36 -9.36 3.05 -331.08 -1.01 -10.37 16 26 C 0.06 1.49 10.48 83.54 0.88 2.36 16 27 C -0.29 -6.78 10.80 21.99 0.24 -6.54 16 28 C 0.04 1.00 12.03 85.24 1.03 2.03 16 29 N -0.33 -9.32 12.58 -57.02 -0.72 -10.04 16 30 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.06 1.09 6.71 -2.39 -0.02 1.07 16 32 H 0.11 1.14 3.97 -2.39 -0.01 1.13 16 33 H 0.11 0.72 3.93 -2.39 -0.01 0.71 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.79 7.34 -2.39 -0.02 0.77 16 37 H 0.06 1.24 4.08 -2.39 -0.01 1.23 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.03 1.03 8.02 -2.39 -0.02 1.01 16 40 H 0.07 1.79 7.40 -2.38 -0.02 1.77 16 41 H 0.06 2.93 5.00 -2.39 -0.01 2.92 16 42 H 0.07 2.47 6.11 -2.39 -0.01 2.45 16 43 H -0.02 -1.02 7.58 -2.38 -0.02 -1.04 16 44 H 0.01 0.52 7.33 -2.39 -0.02 0.50 16 45 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 46 H 0.05 1.95 8.04 -2.39 -0.02 1.93 16 47 H 0.01 0.39 7.64 -2.39 -0.02 0.37 16 48 H 0.10 2.16 8.09 -2.39 -0.02 2.14 16 49 H 0.05 1.86 6.82 -2.39 -0.02 1.85 16 50 H 0.18 3.95 7.06 -2.91 -0.02 3.93 16 51 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 52 H 0.21 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -85.84 380.60 4.48 -81.36 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.93 Total: 15.48 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 7.11 Total: 6.58 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -5.55 Total: -130.87 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.04 Total: -21.97 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -85.84 4.48 -81.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045917911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.083 kcal (2) G-P(sol) polarization free energy of solvation -85.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds