Wall clock time and date at job start Wed Apr 1 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46690 * 2 1 4 4 C 1.50696 * 109.47489 * 239.99744 * 2 1 3 5 5 O 1.21286 * 119.99657 * 267.19141 * 4 2 1 6 6 N 1.34779 * 119.99953 * 87.18577 * 4 2 1 7 7 C 1.43439 * 120.54076 * 175.23761 * 6 4 2 8 8 C 1.54893 * 116.03758 * 271.69847 * 7 6 4 9 9 C 1.54901 * 110.14966 * 318.68141 * 8 7 6 10 10 C 1.49984 * 110.89772 * 321.06911 * 9 8 7 11 11 C 1.52699 * 105.60203 * 97.57722 * 10 9 8 12 12 C 1.55407 * 108.33912 * 145.81127 * 11 10 9 13 13 C 1.54283 * 102.95721 * 210.23667 * 12 11 10 14 14 N 1.47001 * 107.26799 * 22.41768 * 13 12 11 15 15 C 1.36928 * 125.65150 * 180.76348 * 14 13 12 16 16 H 1.08001 * 120.00233 * 180.02562 * 15 14 13 17 17 C 1.38810 * 120.00088 * 0.02562 * 15 14 13 18 18 N 1.31619 * 119.99942 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00222 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46761 * 60.00342 * 19 17 15 21 21 H 1.48493 * 109.47230 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47399 * 300.00630 * 19 17 15 23 23 C 1.47381 * 108.69311 * 1.02279 * 14 13 12 24 24 C 1.46352 * 114.29314 * 270.99940 * 11 10 9 25 25 N 1.46503 * 109.46797 * 119.99312 * 2 1 3 26 26 C 1.34941 * 126.03815 * 35.00984 * 25 2 1 27 27 C 1.35314 * 107.74804 * 179.97438 * 26 25 2 28 28 C 1.39872 * 107.91989 * 359.97438 * 27 26 25 29 29 N 1.30837 * 108.19870 * 359.73974 * 28 27 26 30 30 H 1.08998 * 109.47474 * 293.77258 * 1 2 3 31 31 H 1.09000 * 109.47273 * 53.77101 * 1 2 3 32 32 H 1.09003 * 109.46962 * 173.76659 * 1 2 3 33 33 H 1.08996 * 108.16736 * 33.40552 * 7 6 4 34 34 H 1.08999 * 108.16168 * 150.20432 * 7 6 4 35 35 H 1.08995 * 109.35490 * 78.88747 * 8 7 6 36 36 H 1.08994 * 109.35867 * 198.61497 * 8 7 6 37 37 H 1.09004 * 109.19524 * 81.44239 * 9 8 7 38 38 H 1.09008 * 109.18698 * 200.75279 * 9 8 7 39 39 H 1.08993 * 110.21793 * 338.55442 * 10 9 8 40 40 H 1.09001 * 110.21473 * 216.59078 * 10 9 8 41 41 H 1.08999 * 110.72024 * 91.86902 * 12 11 10 42 42 H 1.09001 * 110.71463 * 328.59625 * 12 11 10 43 43 H 1.08993 * 109.87806 * 263.00200 * 13 12 11 44 44 H 1.09000 * 109.88398 * 141.83325 * 13 12 11 45 45 H 0.97006 * 119.99855 * 180.02562 * 18 17 15 46 46 H 1.09004 * 110.35401 * 94.54006 * 23 14 13 47 47 H 1.08996 * 110.36161 * 216.84404 * 23 14 13 48 48 H 1.09008 * 109.82107 * 177.67853 * 24 11 10 49 49 H 1.08992 * 109.82999 * 298.60886 * 24 11 10 50 50 H 1.08009 * 126.12800 * 359.97438 * 26 25 2 51 51 H 1.08003 * 126.04097 * 180.02562 * 27 26 25 52 52 H 1.07995 * 125.89789 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2831 -1.8963 -1.1860 6 7 2.2031 -0.0281 -2.3801 7 6 2.7759 -0.6676 -3.5291 8 6 4.3205 -0.6195 -3.6347 9 6 4.8401 0.7802 -3.2220 10 6 3.9305 1.8595 -3.7292 11 6 3.0200 2.2142 -2.5557 12 6 2.7068 3.7349 -2.6222 13 6 2.5157 4.1139 -1.1389 14 7 3.2155 3.1008 -0.3360 15 6 3.2741 3.0671 1.0316 16 1 3.8169 2.2773 1.5296 17 6 2.6360 4.0481 1.7780 18 7 1.9741 5.0104 1.1712 19 14 2.7153 4.0018 3.6438 20 1 4.1321 4.0833 4.0811 21 1 1.9592 5.1525 4.2001 22 1 2.1183 2.7334 4.1334 23 6 3.8489 2.1309 -1.2471 24 6 1.7973 1.4137 -2.4789 25 7 2.0183 -0.6905 1.1963 26 6 1.4402 -1.7558 1.7896 27 6 2.1967 -2.0927 2.8598 28 6 3.2743 -1.2032 2.9223 29 7 3.1716 -0.3659 1.9222 30 1 -0.3634 0.4142 0.9404 31 1 -0.3634 0.6074 -0.8290 32 1 -0.3633 -1.0216 -0.1116 33 1 2.4679 -1.7132 -3.5249 34 1 2.3623 -0.1973 -4.4212 35 1 4.7512 -1.3734 -2.9759 36 1 4.6189 -0.8248 -4.6627 37 1 4.8923 0.8369 -2.1347 38 1 5.8373 0.9287 -3.6367 39 1 3.3388 1.4906 -4.5669 40 1 4.5117 2.7306 -4.0316 41 1 1.7925 3.9160 -3.1874 42 1 3.5440 4.2825 -3.0552 43 1 1.4544 4.1155 -0.8906 44 1 2.9443 5.0980 -0.9495 45 1 1.5284 5.6962 1.6928 46 1 4.8856 2.4095 -1.4364 47 1 3.7959 1.1262 -0.8279 48 1 1.2243 1.6978 -1.5962 49 1 1.1972 1.5682 -3.3756 50 1 0.5358 -2.2508 1.4679 51 1 2.0031 -2.9054 3.5442 52 1 4.0580 -1.2091 3.6653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045917912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:04 Heat of formation + Delta-G solvation = 81.491794 kcal Electronic energy + Delta-G solvation = -34451.753133 eV Core-core repulsion = 30454.158764 eV Total energy + Delta-G solvation = -3997.594369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.51617 -41.71329 -39.93281 -37.36402 -35.69520 -34.95449 -34.31266 -32.21439 -31.08429 -30.62686 -30.26850 -28.03664 -27.51428 -26.60747 -25.70534 -24.68546 -22.96789 -21.95626 -21.77389 -21.17995 -19.89328 -19.64693 -18.85675 -18.42366 -18.13045 -17.10387 -16.73462 -16.63744 -16.06183 -15.79480 -15.70909 -15.38443 -15.18061 -14.95461 -14.73025 -14.41300 -14.38231 -14.20957 -13.76900 -13.71801 -13.55843 -13.46732 -13.29881 -13.23216 -13.02757 -12.90068 -12.79564 -12.52596 -12.46917 -12.21360 -11.99365 -11.98083 -11.74703 -11.56963 -11.39571 -11.34415 -11.10609 -11.03326 -10.82531 -10.60732 -10.30678 -9.73814 -9.43773 -8.78615 -7.77891 -5.08545 0.94932 1.27991 1.40567 1.41223 1.48468 1.64273 2.02252 2.04921 2.51604 3.15895 3.40407 3.54047 3.61159 3.82091 3.85743 3.93133 3.97713 4.05238 4.07372 4.09959 4.14633 4.24775 4.34680 4.45364 4.53277 4.56851 4.62406 4.72839 4.75659 4.76438 4.81677 4.84768 4.87255 4.88919 4.97934 5.00376 5.05656 5.11885 5.16523 5.19605 5.30123 5.35877 5.44574 5.51199 5.64444 5.65333 5.78834 5.80579 5.90746 6.12371 6.22279 6.29866 6.86523 7.00264 7.23325 7.88190 8.49438 9.31144 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.006983 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.279409 B = 4008.868295 C = 6166.434653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.119 3.881 3 H 0.133 0.867 4 C 0.515 3.485 5 O -0.567 6.567 6 N -0.589 5.589 7 C 0.108 3.892 8 C -0.125 4.125 9 C -0.140 4.140 10 C -0.090 4.090 11 C -0.086 4.086 12 C -0.118 4.118 13 C 0.180 3.820 14 N -0.615 5.615 15 C -0.205 4.205 16 H 0.070 0.930 17 C -0.054 4.054 18 N -0.943 5.943 19 Si 0.948 3.052 20 H -0.289 1.289 21 H -0.293 1.293 22 H -0.290 1.290 23 C 0.151 3.849 24 C 0.128 3.872 25 N -0.357 5.357 26 C 0.058 3.942 27 C -0.282 4.282 28 C 0.022 3.978 29 N -0.325 5.325 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.031 0.969 36 H 0.102 0.898 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.021 0.979 44 H 0.001 0.999 45 H 0.243 0.757 46 H 0.008 0.992 47 H 0.023 0.977 48 H 0.078 0.922 49 H 0.126 0.874 50 H 0.194 0.806 51 H 0.174 0.826 52 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.764 -10.672 -12.405 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.013 3.987 3 H 0.151 0.849 4 C 0.301 3.699 5 O -0.446 6.446 6 N -0.320 5.320 7 C -0.015 4.015 8 C -0.164 4.164 9 C -0.178 4.178 10 C -0.128 4.128 11 C -0.088 4.088 12 C -0.157 4.157 13 C 0.056 3.944 14 N -0.341 5.341 15 C -0.335 4.335 16 H 0.088 0.912 17 C -0.247 4.247 18 N -0.594 5.594 19 Si 0.780 3.220 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.217 1.217 23 C 0.027 3.973 24 C 0.008 3.992 25 N -0.140 5.140 26 C -0.087 4.087 27 C -0.311 4.311 28 C -0.164 4.164 29 N -0.146 5.146 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.050 0.950 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.039 0.961 44 H 0.019 0.981 45 H 0.052 0.948 46 H 0.025 0.975 47 H 0.041 0.959 48 H 0.096 0.904 49 H 0.144 0.856 50 H 0.211 0.789 51 H 0.191 0.809 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.236 -10.109 -12.933 16.731 hybrid contribution 0.271 -0.266 2.377 2.407 sum -2.965 -10.375 -10.556 15.095 Atomic orbital electron populations 1.22113 0.88752 1.04744 1.05277 1.21577 0.97981 0.98619 0.80507 0.84930 1.20747 0.77360 0.86734 0.85011 1.90651 1.52931 1.16458 1.84604 1.47981 1.60008 1.12562 1.11401 1.21185 0.93898 0.98445 0.87969 1.22582 0.95150 0.96250 1.02387 1.21822 0.99711 0.94980 1.01271 1.21121 0.96980 0.98412 0.96268 1.20887 0.96323 0.96009 0.95551 1.23028 1.02727 0.93524 0.96423 1.20990 0.95029 0.90598 0.87825 1.44799 1.59924 1.28247 1.01119 1.19167 1.25658 1.07035 0.81590 0.91187 1.25177 1.01482 0.98022 1.00022 1.70103 1.39932 1.15853 1.33485 0.85595 0.77058 0.76136 0.83245 1.21572 1.21915 1.21740 1.21907 0.94045 0.91408 0.89968 1.21272 0.96088 0.76949 1.04899 1.48372 1.19301 1.24562 1.21721 1.22945 1.00659 0.90200 0.94932 1.21760 0.98830 1.06796 1.03723 1.24392 1.00516 0.94105 0.97410 1.77533 1.03541 1.24717 1.08780 0.90786 0.87735 0.89669 0.91849 0.87110 0.95015 0.87920 0.93460 0.91740 0.88274 0.90618 0.88575 0.90928 0.96069 0.98109 0.94788 0.97462 0.95910 0.90399 0.85598 0.78947 0.80872 0.78478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 8.52 71.98 0.61 -3.45 16 2 C 0.12 4.23 2.52 44.24 0.11 4.34 16 3 H 0.13 5.55 3.74 -2.38 -0.01 5.54 16 4 C 0.51 17.45 5.94 87.66 0.52 17.97 16 5 O -0.57 -22.29 15.96 -3.05 -0.05 -22.33 16 6 N -0.59 -15.78 2.15 -827.66 -1.78 -17.56 16 7 C 0.11 2.35 4.94 87.59 0.43 2.78 16 8 C -0.12 -2.77 6.41 31.89 0.20 -2.57 16 9 C -0.14 -3.49 5.18 30.27 0.16 -3.33 16 10 C -0.09 -1.91 4.97 29.52 0.15 -1.76 16 11 C -0.09 -2.38 0.49 -52.77 -0.03 -2.41 16 12 C -0.12 -3.51 5.85 31.86 0.19 -3.33 16 13 C 0.18 8.00 5.02 86.72 0.44 8.43 16 14 N -0.62 -29.53 2.74 -691.81 -1.90 -31.43 16 15 C -0.20 -11.36 9.52 84.03 0.80 -10.56 16 16 H 0.07 4.08 7.82 -2.91 -0.02 4.05 16 17 C -0.05 -3.08 5.49 84.86 0.47 -2.61 16 18 N -0.94 -54.94 10.31 21.65 0.22 -54.72 16 19 Si 0.95 48.23 29.55 68.60 2.03 50.26 16 20 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 21 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 22 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 23 C 0.15 6.01 3.56 86.94 0.31 6.31 16 24 C 0.13 3.17 4.43 83.63 0.37 3.54 16 25 N -0.36 -13.85 3.26 -331.05 -1.08 -14.93 16 26 C 0.06 1.88 10.29 83.54 0.86 2.74 16 27 C -0.28 -8.68 10.80 21.99 0.24 -8.44 16 28 C 0.02 0.78 12.03 85.24 1.03 1.81 16 29 N -0.33 -14.18 12.57 -57.03 -0.72 -14.90 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.10 2.35 7.20 -2.39 -0.02 2.34 16 32 H 0.08 1.93 7.48 -2.39 -0.02 1.91 16 33 H 0.06 1.53 7.36 -2.39 -0.02 1.51 16 34 H 0.11 1.55 6.89 -2.39 -0.02 1.53 16 35 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.58 4.04 -2.38 -0.01 1.57 16 38 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.10 1.47 6.30 -2.39 -0.02 1.45 16 40 H 0.08 1.55 7.35 -2.39 -0.02 1.53 16 41 H 0.10 2.24 8.04 -2.39 -0.02 2.22 16 42 H 0.07 2.06 7.43 -2.39 -0.02 2.04 16 43 H 0.02 1.03 7.40 -2.39 -0.02 1.01 16 44 H 0.00 0.03 7.49 -2.39 -0.02 0.01 16 45 H 0.24 14.02 8.31 -92.70 -0.77 13.25 16 46 H 0.01 0.33 7.00 -2.38 -0.02 0.31 16 47 H 0.02 1.01 4.94 -2.39 -0.01 0.99 16 48 H 0.08 2.32 4.64 -2.38 -0.01 2.31 16 49 H 0.13 2.03 8.12 -2.39 -0.02 2.01 16 50 H 0.19 4.76 7.44 -2.91 -0.02 4.74 16 51 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 52 H 0.20 5.77 8.06 -2.91 -0.02 5.74 16 Total: -1.00 -76.75 381.49 4.51 -72.24 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.93 Total: 23.90 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 6.85 Total: 9.47 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -5.25 Total: -133.54 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -76.75 4.51 -72.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045917912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.735 kcal (2) G-P(sol) polarization free energy of solvation -76.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds