Wall clock time and date at job start Wed Apr 1 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46829 * 2 1 4 4 C 1.50688 * 109.47176 * 239.99697 * 2 1 3 5 5 O 1.21276 * 120.00554 * 326.77184 * 4 2 1 6 6 N 1.34782 * 119.99903 * 146.76840 * 4 2 1 7 7 C 1.47082 * 120.88277 * 185.54159 * 6 4 2 8 8 C 1.53233 * 108.52132 * 231.20663 * 7 6 4 9 9 N 1.46897 * 109.34124 * 306.17172 * 8 7 6 10 10 C 1.46904 * 110.99736 * 187.25262 * 9 8 7 11 11 H 1.08995 * 110.64490 * 296.63799 * 10 9 8 12 12 C 1.55159 * 110.72088 * 59.78580 * 10 9 8 13 13 C 1.54902 * 101.58336 * 153.86490 * 12 10 9 14 14 N 1.47424 * 104.83300 * 322.98815 * 13 12 10 15 15 C 1.36937 * 125.65436 * 204.09244 * 14 13 12 16 16 H 1.08000 * 120.00408 * 166.79365 * 15 14 13 17 17 C 1.38813 * 119.99746 * 346.80100 * 15 14 13 18 18 N 1.31621 * 119.99859 * 349.78160 * 17 15 14 19 19 Si 1.86793 * 120.00208 * 169.78078 * 17 15 14 20 20 H 1.48501 * 109.47102 * 84.96455 * 19 17 15 21 21 H 1.48504 * 109.47151 * 324.96540 * 19 17 15 22 22 H 1.48496 * 109.47478 * 204.96154 * 19 17 15 23 23 C 1.47030 * 108.70130 * 24.35835 * 14 13 12 24 24 C 1.46894 * 111.26953 * 63.10757 * 9 8 7 25 25 C 1.47083 * 120.88034 * 5.56986 * 6 4 2 26 26 N 1.46506 * 109.46647 * 119.99647 * 2 1 3 27 27 C 1.36343 * 125.63164 * 59.70326 * 26 2 1 28 28 C 1.34853 * 108.21050 * 179.82537 * 27 26 2 29 29 C 1.40890 * 107.42354 * 0.41649 * 28 27 26 30 30 C 1.34858 * 107.41411 * 359.74085 * 29 28 27 31 31 H 1.08999 * 109.47092 * 60.18502 * 1 2 3 32 32 H 1.09003 * 109.46856 * 180.18304 * 1 2 3 33 33 H 1.08996 * 109.47405 * 300.17792 * 1 2 3 34 34 H 1.09004 * 109.62422 * 111.49863 * 7 6 4 35 35 H 1.08998 * 109.78976 * 351.01586 * 7 6 4 36 36 H 1.09005 * 109.49275 * 186.21131 * 8 7 6 37 37 H 1.09008 * 109.49090 * 66.13256 * 8 7 6 38 38 H 1.08997 * 111.00256 * 35.78447 * 12 10 9 39 39 H 1.09007 * 111.03341 * 271.94745 * 12 10 9 40 40 H 1.08997 * 110.37064 * 204.15063 * 13 12 10 41 41 H 1.09000 * 110.46337 * 81.87358 * 13 12 10 42 42 H 0.97005 * 120.00032 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.87946 * 118.13319 * 23 14 13 44 44 H 1.09004 * 109.87760 * 239.29408 * 23 14 13 45 45 H 1.09000 * 109.49853 * 56.85205 * 24 9 8 46 46 H 1.09004 * 109.49628 * 176.93564 * 24 9 8 47 47 H 1.09002 * 109.62447 * 248.49951 * 25 6 4 48 48 H 1.08994 * 109.62607 * 8.88305 * 25 6 4 49 49 H 1.07991 * 125.89852 * 359.95267 * 27 26 2 50 50 H 1.07999 * 126.29046 * 180.16298 * 28 27 26 51 51 H 1.07997 * 126.29573 * 179.73290 * 29 28 27 52 52 H 1.07998 * 125.88869 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2303 5 8 1.4062 -1.6412 -1.6913 6 7 3.1775 -0.3114 -1.8186 7 6 3.6233 -0.9094 -3.0862 8 6 5.0778 -1.3637 -2.9252 9 7 5.8902 -0.2354 -2.4511 10 6 7.3183 -0.5798 -2.4477 11 1 7.5160 -1.3924 -1.7487 12 6 7.7959 -0.9553 -3.8754 13 6 9.3035 -0.6076 -3.8006 14 7 9.3697 0.6079 -2.9690 15 6 10.3753 1.5371 -2.9921 16 1 10.2382 2.4934 -2.5093 17 6 11.5710 1.2499 -3.6362 18 7 11.8187 0.0246 -4.0482 19 14 12.8283 2.6022 -3.9181 20 1 13.6783 2.7476 -2.7092 21 1 12.1261 3.8829 -4.1865 22 1 13.6802 2.2511 -5.0827 23 6 8.1801 0.6541 -2.1061 24 6 5.4540 0.2141 -1.1224 25 6 4.0149 0.7332 -1.2095 26 7 2.0183 -0.6906 1.1963 27 6 1.7559 -1.9868 1.5279 28 6 2.3799 -2.2586 2.6920 29 6 3.0441 -1.0846 3.0988 30 6 2.8055 -0.1416 2.1647 31 1 -0.3633 0.5110 -0.8916 32 1 -0.3633 -1.0277 0.0033 33 1 -0.3634 0.5166 0.8883 34 1 3.5570 -0.1691 -3.8835 35 1 2.9966 -1.7672 -3.3301 36 1 5.4597 -1.7085 -3.8862 37 1 5.1268 -2.1769 -2.2009 38 1 7.2919 -0.3491 -4.6280 39 1 7.6493 -2.0178 -4.0702 40 1 9.6966 -0.4071 -4.7973 41 1 9.8590 -1.4193 -3.3308 42 1 12.6543 -0.1762 -4.4980 43 1 8.4804 0.6207 -1.0589 44 1 7.6146 1.5650 -2.3029 45 1 5.4978 -0.6210 -0.4233 46 1 6.1087 1.0138 -0.7758 47 1 3.9863 1.6313 -1.8265 48 1 3.6444 0.9632 -0.2106 49 1 1.1541 -2.6773 0.9559 50 1 2.3688 -3.2016 3.2183 51 1 3.6356 -0.9622 3.9941 52 1 3.1740 0.8734 2.1812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046023465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:04 Heat of formation + Delta-G solvation = 69.375920 kcal Electronic energy + Delta-G solvation = -31532.707525 eV Core-core repulsion = 27534.587772 eV Total energy + Delta-G solvation = -3998.119752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.74968 -40.22700 -38.71815 -36.77852 -34.67160 -34.21707 -32.01544 -31.47536 -29.66663 -29.31377 -28.91704 -28.10715 -26.41181 -24.78059 -24.27160 -23.38524 -21.80899 -20.73341 -20.45794 -20.07317 -19.64349 -19.09700 -17.91503 -17.46277 -16.85296 -16.30062 -15.67102 -15.40609 -14.94396 -14.82813 -14.65181 -14.52378 -14.39830 -14.14026 -13.79649 -13.72214 -13.23065 -13.11258 -12.86853 -12.64892 -12.61636 -12.39471 -12.38612 -12.22547 -12.00688 -11.95707 -11.69890 -11.64249 -11.39752 -11.32162 -10.90022 -10.80282 -10.39010 -10.21538 -10.18262 -10.08753 -9.88875 -9.70970 -9.04260 -8.82146 -8.58828 -8.34281 -8.22282 -6.78005 -5.76183 -3.09348 1.77845 2.05784 2.54579 2.90049 2.94436 3.39025 3.44482 3.46418 3.81578 3.91873 4.12341 4.38989 4.50224 4.66303 4.73607 4.78437 4.91677 5.03635 5.05876 5.14338 5.16019 5.19473 5.24512 5.38429 5.40834 5.46194 5.47632 5.49156 5.51419 5.61957 5.64443 5.73397 5.79384 5.83189 5.92416 6.10659 6.12614 6.14647 6.27949 6.48228 6.52969 6.60013 6.64813 6.79941 6.95887 7.02543 7.11044 7.11936 7.33613 7.45598 7.58504 7.68562 7.76258 8.25607 9.18127 9.80499 10.49115 11.37452 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.002378 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.779807 B =11770.006790 C =12370.846548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.116 3.884 3 H 0.116 0.884 4 C 0.510 3.490 5 O -0.530 6.530 6 N -0.602 5.602 7 C 0.117 3.883 8 C 0.042 3.958 9 N -0.525 5.525 10 C 0.073 3.927 11 H 0.044 0.956 12 C -0.135 4.135 13 C 0.176 3.824 14 N -0.600 5.600 15 C -0.229 4.229 16 H 0.074 0.926 17 C -0.006 4.006 18 N -0.917 5.917 19 Si 0.910 3.090 20 H -0.288 1.288 21 H -0.281 1.281 22 H -0.290 1.290 23 C 0.147 3.853 24 C 0.041 3.959 25 C 0.110 3.890 26 N -0.440 5.440 27 C -0.003 4.003 28 C -0.202 4.202 29 C -0.194 4.194 30 C -0.019 4.019 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.028 0.972 42 H 0.253 0.747 43 H 0.017 0.983 44 H 0.034 0.966 45 H 0.037 0.963 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.159 0.841 50 H 0.134 0.866 51 H 0.136 0.864 52 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.926 -0.642 8.770 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 H 0.134 0.866 4 C 0.295 3.705 5 O -0.405 6.405 6 N -0.336 5.336 7 C -0.006 4.006 8 C -0.087 4.087 9 N -0.250 5.250 10 C -0.035 4.035 11 H 0.062 0.938 12 C -0.174 4.174 13 C 0.050 3.950 14 N -0.327 5.327 15 C -0.358 4.358 16 H 0.092 0.908 17 C -0.203 4.203 18 N -0.564 5.564 19 Si 0.740 3.260 20 H -0.215 1.215 21 H -0.207 1.207 22 H -0.216 1.216 23 C 0.021 3.979 24 C -0.088 4.088 25 C -0.013 4.013 26 N -0.119 5.119 27 C -0.132 4.132 28 C -0.226 4.226 29 C -0.219 4.219 30 C -0.147 4.147 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.113 0.887 47 H 0.101 0.899 48 H 0.099 0.901 49 H 0.177 0.823 50 H 0.152 0.848 51 H 0.154 0.846 52 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.230 -0.562 7.788 24.507 hybrid contribution 1.051 0.000 0.512 1.169 sum -22.179 -0.562 8.300 23.688 Atomic orbital electron populations 1.22000 0.90843 1.04603 1.03351 1.21507 0.97501 0.97422 0.82576 0.86635 1.20558 0.80871 0.84041 0.85001 1.90704 1.56966 1.27914 1.64926 1.48238 1.21714 1.39375 1.24224 1.21804 0.94681 0.99359 0.84713 1.22443 0.92451 0.92201 1.01561 1.62020 1.03518 1.35042 1.24399 1.22674 0.85157 0.97466 0.98216 0.93833 1.23072 1.00186 0.99263 0.94916 1.21321 0.88431 0.88640 0.96580 1.44395 1.21055 1.25257 1.41963 1.18962 0.91626 0.93656 1.31557 0.90780 1.24858 0.97108 0.96443 1.01888 1.69956 1.24809 1.17293 1.44329 0.86175 0.81177 0.81117 0.77487 1.21487 1.20679 1.21594 1.21233 0.88571 0.94604 0.93508 1.22419 0.94916 1.00711 0.90715 1.21991 0.90343 0.90716 0.98283 1.43936 1.40196 1.10668 1.17078 1.21843 1.06211 0.85832 0.99302 1.20915 1.04344 0.99407 0.97959 1.20915 1.06137 0.93717 1.01126 1.21851 1.01509 0.99934 0.91408 0.90364 0.90426 0.90798 0.90262 0.88783 0.88877 0.94705 0.91113 0.92617 0.91849 0.95383 0.93673 0.96542 0.94809 0.94441 0.88721 0.89853 0.90098 0.82325 0.84772 0.84627 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.87 37.16 0.33 -0.74 16 2 C 0.12 0.96 2.48 -69.08 -0.17 0.78 16 3 H 0.12 0.69 6.27 -51.93 -0.33 0.36 16 4 C 0.51 5.64 6.68 -10.99 -0.07 5.57 16 5 O -0.53 -7.41 15.70 5.56 0.09 -7.32 16 6 N -0.60 -6.42 3.01 -172.47 -0.52 -6.94 16 7 C 0.12 1.30 6.61 -3.60 -0.02 1.27 16 8 C 0.04 0.53 5.46 -3.70 -0.02 0.51 16 9 N -0.52 -7.31 4.45 -224.15 -1.00 -8.31 16 10 C 0.07 1.25 2.64 -65.87 -0.17 1.08 16 11 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 12 C -0.14 -2.48 5.34 -24.58 -0.13 -2.61 16 13 C 0.18 4.20 5.38 -2.53 -0.01 4.19 16 14 N -0.60 -15.28 3.39 -170.07 -0.58 -15.86 16 15 C -0.23 -6.38 10.22 -15.06 -0.15 -6.54 16 16 H 0.07 1.99 7.85 -52.49 -0.41 1.58 16 17 C -0.01 -0.17 5.38 -17.43 -0.09 -0.26 16 18 N -0.92 -26.90 10.84 55.49 0.60 -26.30 16 19 Si 0.91 21.92 29.57 -169.99 -5.03 16.90 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.15 3.02 5.73 -3.05 -0.02 3.00 16 24 C 0.04 0.49 5.46 -3.71 -0.02 0.47 16 25 C 0.11 1.02 6.28 -3.60 -0.02 0.99 16 26 N -0.44 -4.18 2.61 -111.26 -0.29 -4.47 16 27 C 0.00 -0.03 10.50 -16.75 -0.18 -0.21 16 28 C -0.20 -2.15 10.86 -39.78 -0.43 -2.58 16 29 C -0.19 -1.95 10.86 -39.78 -0.43 -2.39 16 30 C -0.02 -0.17 10.80 -16.75 -0.18 -0.35 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.66 7.62 -51.93 -0.40 0.26 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.09 7.06 -51.93 -0.37 0.72 16 36 H 0.09 1.13 6.77 -51.93 -0.35 0.78 16 37 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 0.91 7.93 -51.93 -0.41 0.49 16 40 H 0.06 1.68 7.18 -51.93 -0.37 1.30 16 41 H 0.03 0.73 7.99 -51.93 -0.42 0.32 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.03 0.69 7.74 -51.93 -0.40 0.29 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 1.14 6.84 -51.93 -0.36 0.78 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.59 5.19 -51.93 -0.27 0.32 16 49 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 50 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 51 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 52 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -32.68 402.70 -11.17 -43.85 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.71 Total: 0.19 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.81 Total: 2.19 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -1.78 Total: -61.88 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.09 Total: -7.32 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.68 -11.17 -43.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046023465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.229 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds