Wall clock time and date at job start Wed Apr 1 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46829 * 2 1 4 4 C 1.50688 * 109.47176 * 239.99697 * 2 1 3 5 5 O 1.21276 * 120.00554 * 326.77184 * 4 2 1 6 6 N 1.34782 * 119.99903 * 146.76840 * 4 2 1 7 7 C 1.47082 * 120.88277 * 185.54159 * 6 4 2 8 8 C 1.53233 * 108.52132 * 231.20663 * 7 6 4 9 9 N 1.46897 * 109.34124 * 306.17172 * 8 7 6 10 10 C 1.46904 * 110.99736 * 187.25262 * 9 8 7 11 11 H 1.08995 * 110.64490 * 296.63799 * 10 9 8 12 12 C 1.55159 * 110.72088 * 59.78580 * 10 9 8 13 13 C 1.54902 * 101.58336 * 153.86490 * 12 10 9 14 14 N 1.47424 * 104.83300 * 322.98815 * 13 12 10 15 15 C 1.36937 * 125.65436 * 204.09244 * 14 13 12 16 16 H 1.08000 * 120.00408 * 166.79365 * 15 14 13 17 17 C 1.38813 * 119.99746 * 346.80100 * 15 14 13 18 18 N 1.31621 * 119.99859 * 349.78160 * 17 15 14 19 19 Si 1.86793 * 120.00208 * 169.78078 * 17 15 14 20 20 H 1.48501 * 109.47102 * 84.96455 * 19 17 15 21 21 H 1.48504 * 109.47151 * 324.96540 * 19 17 15 22 22 H 1.48496 * 109.47478 * 204.96154 * 19 17 15 23 23 C 1.47030 * 108.70130 * 24.35835 * 14 13 12 24 24 C 1.46894 * 111.26953 * 63.10757 * 9 8 7 25 25 C 1.47083 * 120.88034 * 5.56986 * 6 4 2 26 26 N 1.46506 * 109.46647 * 119.99647 * 2 1 3 27 27 C 1.36343 * 125.63164 * 59.70326 * 26 2 1 28 28 C 1.34853 * 108.21050 * 179.82537 * 27 26 2 29 29 C 1.40890 * 107.42354 * 0.41649 * 28 27 26 30 30 C 1.34858 * 107.41411 * 359.74085 * 29 28 27 31 31 H 1.08999 * 109.47092 * 60.18502 * 1 2 3 32 32 H 1.09003 * 109.46856 * 180.18304 * 1 2 3 33 33 H 1.08996 * 109.47405 * 300.17792 * 1 2 3 34 34 H 1.09004 * 109.62422 * 111.49863 * 7 6 4 35 35 H 1.08998 * 109.78976 * 351.01586 * 7 6 4 36 36 H 1.09005 * 109.49275 * 186.21131 * 8 7 6 37 37 H 1.09008 * 109.49090 * 66.13256 * 8 7 6 38 38 H 1.08997 * 111.00256 * 35.78447 * 12 10 9 39 39 H 1.09007 * 111.03341 * 271.94745 * 12 10 9 40 40 H 1.08997 * 110.37064 * 204.15063 * 13 12 10 41 41 H 1.09000 * 110.46337 * 81.87358 * 13 12 10 42 42 H 0.97005 * 120.00032 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.87946 * 118.13319 * 23 14 13 44 44 H 1.09004 * 109.87760 * 239.29408 * 23 14 13 45 45 H 1.09000 * 109.49853 * 56.85205 * 24 9 8 46 46 H 1.09004 * 109.49628 * 176.93564 * 24 9 8 47 47 H 1.09002 * 109.62447 * 248.49951 * 25 6 4 48 48 H 1.08994 * 109.62607 * 8.88305 * 25 6 4 49 49 H 1.07991 * 125.89852 * 359.95267 * 27 26 2 50 50 H 1.07999 * 126.29046 * 180.16298 * 28 27 26 51 51 H 1.07997 * 126.29573 * 179.73290 * 29 28 27 52 52 H 1.07998 * 125.88869 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2303 5 8 1.4062 -1.6412 -1.6913 6 7 3.1775 -0.3114 -1.8186 7 6 3.6233 -0.9094 -3.0862 8 6 5.0778 -1.3637 -2.9252 9 7 5.8902 -0.2354 -2.4511 10 6 7.3183 -0.5798 -2.4477 11 1 7.5160 -1.3924 -1.7487 12 6 7.7959 -0.9553 -3.8754 13 6 9.3035 -0.6076 -3.8006 14 7 9.3697 0.6079 -2.9690 15 6 10.3753 1.5371 -2.9921 16 1 10.2382 2.4934 -2.5093 17 6 11.5710 1.2499 -3.6362 18 7 11.8187 0.0246 -4.0482 19 14 12.8283 2.6022 -3.9181 20 1 13.6783 2.7476 -2.7092 21 1 12.1261 3.8829 -4.1865 22 1 13.6802 2.2511 -5.0827 23 6 8.1801 0.6541 -2.1061 24 6 5.4540 0.2141 -1.1224 25 6 4.0149 0.7332 -1.2095 26 7 2.0183 -0.6906 1.1963 27 6 1.7559 -1.9868 1.5279 28 6 2.3799 -2.2586 2.6920 29 6 3.0441 -1.0846 3.0988 30 6 2.8055 -0.1416 2.1647 31 1 -0.3633 0.5110 -0.8916 32 1 -0.3633 -1.0277 0.0033 33 1 -0.3634 0.5166 0.8883 34 1 3.5570 -0.1691 -3.8835 35 1 2.9966 -1.7672 -3.3301 36 1 5.4597 -1.7085 -3.8862 37 1 5.1268 -2.1769 -2.2009 38 1 7.2919 -0.3491 -4.6280 39 1 7.6493 -2.0178 -4.0702 40 1 9.6966 -0.4071 -4.7973 41 1 9.8590 -1.4193 -3.3308 42 1 12.6543 -0.1762 -4.4980 43 1 8.4804 0.6207 -1.0589 44 1 7.6146 1.5650 -2.3029 45 1 5.4978 -0.6210 -0.4233 46 1 6.1087 1.0138 -0.7758 47 1 3.9863 1.6313 -1.8265 48 1 3.6444 0.9632 -0.2106 49 1 1.1541 -2.6773 0.9559 50 1 2.3688 -3.2016 3.2183 51 1 3.6356 -0.9622 3.9941 52 1 3.1740 0.8734 2.1812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046023465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:01 Heat of formation + Delta-G solvation = 49.729207 kcal Electronic energy + Delta-G solvation = -31533.559470 eV Core-core repulsion = 27534.587772 eV Total energy + Delta-G solvation = -3998.971698 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -42.49050 -41.12223 -39.94380 -38.15193 -35.74529 -35.18512 -33.83237 -32.40656 -31.06735 -30.32742 -29.63376 -29.50723 -27.76952 -26.04161 -25.56655 -24.44256 -22.73316 -21.91914 -21.45325 -21.36704 -20.93869 -19.90854 -18.90488 -18.72145 -18.19866 -17.24083 -16.94817 -16.61553 -16.31308 -16.01274 -15.93478 -15.55082 -15.36152 -15.14109 -14.83482 -14.62187 -14.50499 -14.24663 -14.10038 -13.72582 -13.56535 -13.47611 -13.32596 -13.19234 -13.08333 -12.98222 -12.83485 -12.72106 -12.70675 -12.55882 -12.46662 -12.32265 -12.02063 -11.81409 -11.81061 -11.62935 -11.55505 -11.09823 -10.67824 -9.95481 -9.57202 -9.35509 -9.08005 -8.83525 -7.88572 -5.24074 0.98921 1.31237 1.47273 1.49233 1.58137 1.75768 2.14114 2.21833 2.48754 2.73685 3.15940 3.32473 3.54451 3.64245 3.69065 3.78663 3.86879 3.97350 4.05888 4.09143 4.16542 4.24762 4.25541 4.34733 4.37265 4.43992 4.57533 4.58640 4.62595 4.65559 4.72029 4.73989 4.78610 4.81544 4.87296 4.95818 4.98857 5.05486 5.07995 5.11378 5.27457 5.38437 5.41696 5.44169 5.58319 5.69929 5.97134 6.02939 6.05925 6.19019 6.21643 6.26581 6.43112 6.85812 7.07935 7.76270 8.43745 9.24148 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.002378 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.779807 B =11770.006790 C =12370.846548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.118 3.882 3 H 0.149 0.851 4 C 0.507 3.493 5 O -0.564 6.564 6 N -0.604 5.604 7 C 0.121 3.879 8 C 0.046 3.954 9 N -0.523 5.523 10 C 0.090 3.910 11 H 0.038 0.962 12 C -0.116 4.116 13 C 0.181 3.819 14 N -0.623 5.623 15 C -0.244 4.244 16 H 0.080 0.920 17 C -0.064 4.064 18 N -0.949 5.949 19 Si 0.978 3.022 20 H -0.283 1.283 21 H -0.269 1.269 22 H -0.294 1.294 23 C 0.148 3.852 24 C 0.040 3.960 25 C 0.115 3.885 26 N -0.440 5.440 27 C -0.022 4.022 28 C -0.216 4.216 29 C -0.218 4.218 30 C -0.011 4.011 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.023 0.977 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.029 0.971 41 H -0.004 1.004 42 H 0.248 0.752 43 H 0.014 0.986 44 H 0.043 0.957 45 H 0.026 0.974 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.153 0.847 50 H 0.138 0.862 51 H 0.146 0.854 52 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.413 1.574 9.422 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.166 0.834 4 C 0.294 3.706 5 O -0.442 6.442 6 N -0.336 5.336 7 C -0.001 4.001 8 C -0.082 4.082 9 N -0.248 5.248 10 C -0.019 4.019 11 H 0.056 0.944 12 C -0.155 4.155 13 C 0.055 3.945 14 N -0.350 5.350 15 C -0.373 4.373 16 H 0.098 0.902 17 C -0.257 4.257 18 N -0.597 5.597 19 Si 0.806 3.194 20 H -0.210 1.210 21 H -0.194 1.194 22 H -0.221 1.221 23 C 0.023 3.977 24 C -0.088 4.088 25 C -0.007 4.007 26 N -0.118 5.118 27 C -0.152 4.152 28 C -0.241 4.241 29 C -0.242 4.242 30 C -0.139 4.139 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.014 0.986 42 H 0.057 0.943 43 H 0.032 0.968 44 H 0.061 0.939 45 H 0.045 0.955 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.125 0.875 49 H 0.170 0.830 50 H 0.155 0.845 51 H 0.163 0.837 52 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -24.751 1.674 8.464 26.212 hybrid contribution 1.491 -0.719 0.356 1.694 sum -23.260 0.955 8.820 24.894 Atomic orbital electron populations 1.21990 0.90082 1.03755 1.04607 1.21660 0.98124 0.98217 0.80686 0.83400 1.21069 0.80532 0.83566 0.85464 1.90693 1.58003 1.29490 1.66030 1.48340 1.21806 1.39480 1.23987 1.21712 0.93327 0.99603 0.85493 1.22444 0.93139 0.91360 1.01278 1.61989 1.01560 1.35375 1.25859 1.22349 0.86980 0.95619 0.96924 0.94408 1.22859 0.95839 1.00811 0.95982 1.21113 0.91809 0.87426 0.94166 1.44722 1.21868 1.25087 1.43298 1.19367 0.92381 0.94457 1.31062 0.90235 1.25712 0.99244 0.98608 1.02150 1.70155 1.25062 1.19215 1.45315 0.85119 0.78561 0.78737 0.77026 1.21002 1.19360 1.22064 1.21323 0.87442 0.96476 0.92481 1.22495 0.96800 1.00339 0.89195 1.22080 0.88194 0.90393 1.00052 1.44033 1.40110 1.10257 1.17435 1.21858 1.06920 0.86754 0.99630 1.21151 1.04605 1.00124 0.98219 1.21183 1.06924 0.93873 1.02206 1.22367 1.00127 1.00960 0.90442 0.89310 0.92375 0.89262 0.89141 0.89385 0.88516 0.95873 0.90496 0.90289 0.95272 0.98558 0.94274 0.96789 0.93910 0.95536 0.88548 0.88323 0.87500 0.82982 0.84455 0.83669 0.78870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.87 71.98 0.64 -1.11 16 2 C 0.12 1.60 2.48 44.24 0.11 1.71 16 3 H 0.15 1.03 6.27 -2.39 -0.01 1.01 16 4 C 0.51 10.15 6.68 87.65 0.59 10.74 16 5 O -0.56 -15.33 15.70 -3.02 -0.05 -15.38 16 6 N -0.60 -11.24 3.01 -817.96 -2.46 -13.70 16 7 C 0.12 2.44 6.61 86.35 0.57 3.01 16 8 C 0.05 1.07 5.46 86.38 0.47 1.54 16 9 N -0.52 -13.41 4.45 -863.07 -3.84 -17.25 16 10 C 0.09 2.98 2.64 46.11 0.12 3.10 16 11 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 12 C -0.12 -4.16 5.34 31.98 0.17 -3.99 16 13 C 0.18 8.86 5.38 86.85 0.47 9.32 16 14 N -0.62 -31.99 3.39 -691.97 -2.35 -34.34 16 15 C -0.24 -13.62 10.22 84.03 0.86 -12.76 16 16 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 17 C -0.06 -3.61 5.38 84.86 0.46 -3.16 16 18 N -0.95 -57.30 10.84 21.65 0.23 -57.07 16 19 Si 0.98 45.36 29.57 68.60 2.03 47.39 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 23 C 0.15 5.94 5.73 86.73 0.50 6.44 16 24 C 0.04 0.85 5.46 86.38 0.47 1.32 16 25 C 0.11 1.69 6.28 86.35 0.54 2.24 16 26 N -0.44 -7.36 2.61 -505.91 -1.32 -8.68 16 27 C -0.02 -0.47 10.50 83.21 0.87 0.40 16 28 C -0.22 -4.50 10.86 22.14 0.24 -4.26 16 29 C -0.22 -4.02 10.86 22.14 0.24 -3.78 16 30 C -0.01 -0.16 10.80 83.22 0.90 0.74 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.94 7.62 -2.39 -0.02 0.92 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 1.65 8.14 -2.38 -0.02 1.64 16 35 H 0.09 1.93 7.06 -2.39 -0.02 1.91 16 36 H 0.10 2.16 6.77 -2.38 -0.02 2.14 16 37 H 0.02 0.59 8.14 -2.38 -0.02 0.58 16 38 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.08 2.46 7.93 -2.38 -0.02 2.45 16 40 H 0.03 1.60 7.18 -2.39 -0.02 1.58 16 41 H 0.00 -0.20 7.99 -2.39 -0.02 -0.21 16 42 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 43 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.04 1.65 7.74 -2.39 -0.02 1.64 16 45 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.10 2.03 6.84 -2.38 -0.02 2.02 16 47 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.11 1.04 5.19 -2.39 -0.01 1.02 16 49 H 0.15 3.26 8.06 -2.92 -0.02 3.24 16 50 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 51 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 52 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -72.92 402.70 1.35 -71.58 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.89 Total: 15.95 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 8.21 Total: 11.50 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -9.74 Total: -131.04 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.05 Total: -15.38 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.92 1.35 -71.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046023465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.306 kcal (2) G-P(sol) polarization free energy of solvation -72.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds