Wall clock time and date at job start Wed Apr 1 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47493 * 2 1 4 4 C 1.50712 * 109.46750 * 119.99669 * 2 1 3 5 5 O 1.21280 * 119.99992 * 22.64898 * 4 2 1 6 6 N 1.34778 * 119.99645 * 202.64302 * 4 2 1 7 7 C 1.47080 * 120.87605 * 174.71890 * 6 4 2 8 8 C 1.53240 * 108.51823 * 231.20900 * 7 6 4 9 9 N 1.46891 * 109.34148 * 306.16964 * 8 7 6 10 10 C 1.46901 * 111.00309 * 187.25682 * 9 8 7 11 11 H 1.09001 * 110.88246 * 303.88154 * 10 9 8 12 12 C 1.55154 * 111.00644 * 180.02562 * 10 9 8 13 13 C 1.54327 * 102.94191 * 206.42217 * 12 10 9 14 14 N 1.47021 * 107.27014 * 22.19240 * 13 12 10 15 15 C 1.36933 * 125.64674 * 181.02454 * 14 13 12 16 16 H 1.08004 * 120.00017 * 154.84111 * 15 14 13 17 17 C 1.38818 * 120.00309 * 334.83728 * 15 14 13 18 18 N 1.31614 * 120.00407 * 140.70437 * 17 15 14 19 19 Si 1.86805 * 119.99362 * 320.70132 * 17 15 14 20 20 H 1.48492 * 109.47450 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46959 * 239.99892 * 19 17 15 22 22 H 1.48504 * 109.46622 * 120.00325 * 19 17 15 23 23 C 1.47419 * 108.70351 * 1.28624 * 14 13 12 24 24 C 1.46903 * 111.27027 * 63.10793 * 9 8 7 25 25 C 1.47072 * 120.88565 * 354.74665 * 6 4 2 26 26 N 1.46498 * 109.47408 * 239.99523 * 2 1 3 27 27 C 1.36343 * 125.63545 * 299.69464 * 26 2 1 28 28 C 1.34852 * 108.21924 * 179.83027 * 27 26 2 29 29 C 1.40891 * 107.41602 * 0.42725 * 28 27 26 30 30 C 1.34855 * 107.41604 * 359.73255 * 29 28 27 31 31 H 1.09003 * 109.46730 * 54.55788 * 1 2 3 32 32 H 1.09001 * 109.47283 * 174.55324 * 1 2 3 33 33 H 1.09000 * 109.47688 * 294.56040 * 1 2 3 34 34 H 1.09002 * 109.62891 * 111.50049 * 7 6 4 35 35 H 1.09000 * 109.63248 * 350.91792 * 7 6 4 36 36 H 1.09007 * 109.49297 * 186.21347 * 8 7 6 37 37 H 1.09001 * 109.51652 * 66.14588 * 8 7 6 38 38 H 1.08999 * 110.72170 * 88.05924 * 12 10 9 39 39 H 1.09004 * 110.87219 * 324.85298 * 12 10 9 40 40 H 1.09001 * 109.88064 * 262.77339 * 13 12 10 41 41 H 1.08999 * 109.88131 * 141.61141 * 13 12 10 42 42 H 0.97004 * 119.99674 * 4.88972 * 18 17 15 43 43 H 1.08999 * 110.37026 * 94.48279 * 23 14 13 44 44 H 1.09007 * 110.36902 * 216.80484 * 23 14 13 45 45 H 1.08999 * 109.49288 * 56.85148 * 24 9 8 46 46 H 1.08994 * 109.49350 * 176.93458 * 24 9 8 47 47 H 1.09001 * 109.62993 * 248.50080 * 25 6 4 48 48 H 1.09007 * 109.62926 * 9.07707 * 25 6 4 49 49 H 1.08001 * 125.89534 * 359.96402 * 27 26 2 50 50 H 1.07994 * 126.29402 * 180.17030 * 28 27 26 51 51 H 1.07996 * 126.29453 * 179.74077 * 29 28 27 52 52 H 1.08001 * 125.89249 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 1.3204 -1.5080 1.8033 6 7 3.2725 -0.4593 1.6946 7 6 3.7409 -1.0526 2.9563 8 6 4.3045 0.0652 3.8400 9 7 5.3223 0.8124 3.0895 10 6 6.0088 1.7812 3.9544 11 1 5.2944 2.4576 4.4237 12 6 7.0836 2.5708 3.1615 13 6 8.0954 2.9714 4.2558 14 7 7.9221 2.0339 5.3749 15 6 8.6192 2.0601 6.5532 16 1 8.1866 1.6337 7.4462 17 6 9.8821 2.6347 6.6000 18 7 10.2396 3.3540 7.6426 19 14 11.0739 2.3868 5.1831 20 1 10.4346 1.5453 4.1399 21 1 12.3005 1.7132 5.6801 22 1 11.4339 3.7055 4.6027 23 6 6.8780 1.0570 5.0158 24 6 4.7390 1.4756 1.9156 25 6 4.1932 0.4156 0.9530 26 7 2.0184 -0.6907 -1.1961 27 6 1.7657 -1.9903 -1.5217 28 6 2.3800 -2.2589 -2.6918 29 6 3.0442 -1.0849 -3.0985 30 6 2.8056 -0.1418 -2.1645 31 1 -0.3633 0.5960 -0.8373 32 1 -0.3634 -1.0230 -0.0975 33 1 -0.3634 0.4271 0.9346 34 1 4.5217 -1.7845 2.7491 35 1 2.9072 -1.5366 3.4651 36 1 4.7562 -0.3691 4.7320 37 1 3.4994 0.7397 4.1317 38 1 6.6477 3.4553 2.6969 39 1 7.5571 1.9368 2.4119 40 1 7.8958 3.9894 4.5906 41 1 9.1108 2.8997 3.8659 42 1 9.6490 3.4243 8.4088 43 1 7.3280 0.1591 4.5925 44 1 6.2773 0.8053 5.8899 45 1 3.9276 2.1303 2.2336 46 1 5.5057 2.0641 1.4119 47 1 5.0175 -0.1751 0.5532 48 1 3.6585 0.9023 0.1372 49 1 1.1736 -2.6844 -0.9436 50 1 2.3688 -3.2019 -3.2180 51 1 3.6357 -0.9625 -3.9938 52 1 3.1747 0.8730 -2.1806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046023468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:29 Heat of formation + Delta-G solvation = 70.882362 kcal Electronic energy + Delta-G solvation = -31400.989812 eV Core-core repulsion = 27402.935384 eV Total energy + Delta-G solvation = -3998.054428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.83825 -40.30087 -38.85919 -36.99170 -34.73113 -34.32823 -32.32075 -31.56326 -29.70765 -29.58979 -29.01851 -28.50451 -26.49766 -25.09025 -23.78344 -23.35533 -21.88989 -20.83099 -20.50602 -20.26647 -19.85383 -19.14243 -18.18350 -17.49575 -17.41279 -16.41657 -15.84963 -15.48884 -15.17765 -15.07328 -14.87173 -14.50308 -14.42974 -14.01132 -13.91631 -13.82886 -13.25771 -13.18719 -13.00509 -12.88646 -12.68216 -12.57718 -12.49250 -12.35804 -12.30514 -12.26370 -12.09393 -11.71574 -11.53639 -11.29108 -11.13075 -10.89648 -10.50943 -10.42078 -10.38175 -10.24702 -9.72084 -9.39313 -9.11333 -8.90085 -8.42859 -8.36935 -8.20253 -7.10406 -6.35758 -3.23525 1.73698 1.96474 2.48663 2.81585 2.86226 3.45877 3.52951 3.68568 3.70807 3.83753 4.06833 4.32842 4.56063 4.59108 4.63323 4.66814 4.80035 4.91643 4.97488 5.01682 5.09761 5.10461 5.12117 5.16384 5.26274 5.30096 5.35394 5.39806 5.40117 5.49822 5.55586 5.57749 5.59522 5.67557 5.78711 5.88903 6.02735 6.04254 6.07322 6.15729 6.18848 6.46981 6.57195 6.65989 6.71560 6.83539 6.89075 6.95329 6.99675 7.02305 7.17974 7.63352 7.90620 8.36219 8.98734 9.61297 10.35102 11.00597 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.002338 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.554496 B =11973.870378 C =12636.019928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.117 3.883 3 H 0.116 0.884 4 C 0.509 3.491 5 O -0.529 6.529 6 N -0.601 5.601 7 C 0.117 3.883 8 C 0.042 3.958 9 N -0.526 5.526 10 C 0.069 3.931 11 H 0.050 0.950 12 C -0.123 4.123 13 C 0.132 3.868 14 N -0.601 5.601 15 C -0.351 4.351 16 H 0.066 0.934 17 C 0.000 4.000 18 N -0.893 5.893 19 Si 1.042 2.958 20 H -0.281 1.281 21 H -0.296 1.296 22 H -0.293 1.293 23 C 0.140 3.860 24 C 0.039 3.961 25 C 0.112 3.888 26 N -0.440 5.440 27 C -0.005 4.005 28 C -0.200 4.200 29 C -0.194 4.194 30 C -0.019 4.019 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.027 0.973 42 H 0.267 0.733 43 H 0.032 0.968 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.159 0.841 50 H 0.135 0.865 51 H 0.136 0.864 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.964 -5.583 -20.418 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.011 3.989 3 H 0.134 0.866 4 C 0.294 3.706 5 O -0.404 6.404 6 N -0.334 5.334 7 C -0.005 4.005 8 C -0.086 4.086 9 N -0.251 5.251 10 C -0.039 4.039 11 H 0.068 0.932 12 C -0.161 4.161 13 C 0.006 3.994 14 N -0.328 5.328 15 C -0.477 4.477 16 H 0.084 0.916 17 C -0.205 4.205 18 N -0.530 5.530 19 Si 0.872 3.128 20 H -0.207 1.207 21 H -0.224 1.224 22 H -0.220 1.220 23 C 0.014 3.986 24 C -0.090 4.090 25 C -0.011 4.011 26 N -0.119 5.119 27 C -0.133 4.133 28 C -0.225 4.225 29 C -0.219 4.219 30 C -0.147 4.147 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.099 0.901 49 H 0.176 0.824 50 H 0.153 0.847 51 H 0.154 0.846 52 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.589 -5.747 -20.393 27.536 hybrid contribution -1.846 0.199 0.828 2.033 sum -19.435 -5.548 -19.565 28.130 Atomic orbital electron populations 1.21970 0.90764 1.04428 1.03416 1.21519 0.97553 0.97433 0.82432 0.86619 1.20568 0.81464 0.82810 0.85745 1.90720 1.55995 1.34215 1.59476 1.48216 1.13004 1.48205 1.23995 1.21812 0.99785 0.95577 0.83335 1.22482 0.93590 0.95672 0.96891 1.61935 1.27717 1.27318 1.08112 1.22905 0.94673 0.92504 0.93859 0.93176 1.22655 0.96520 0.98778 0.98162 1.21454 0.96081 0.94067 0.87786 1.44635 1.43571 1.28443 1.16183 1.19672 0.98599 1.44460 0.85017 0.91613 1.26025 0.96015 0.95307 1.03184 1.70945 1.43827 1.29686 1.08587 0.84066 0.75962 0.76621 0.76143 1.20731 1.22390 1.22010 1.21615 0.90561 0.92733 0.93644 1.22493 0.98622 0.95176 0.92742 1.21978 0.93188 0.92097 0.93840 1.43971 1.40291 1.10433 1.17200 1.21831 1.06470 0.85683 0.99364 1.20911 1.04423 0.99448 0.97690 1.20909 1.06148 0.93760 1.01087 1.21847 1.01415 0.99918 0.91534 0.90923 0.90557 0.90259 0.90241 0.88700 0.88707 0.94543 0.91961 0.90697 0.94803 0.95527 0.92275 0.95063 0.94499 0.94597 0.88801 0.89765 0.90105 0.82398 0.84737 0.84624 0.82120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.72 37.16 0.32 -0.71 16 2 C 0.12 0.90 2.39 -69.08 -0.16 0.74 16 3 H 0.12 0.65 6.53 -51.93 -0.34 0.31 16 4 C 0.51 5.41 6.78 -10.98 -0.07 5.33 16 5 O -0.53 -7.22 15.65 5.56 0.09 -7.13 16 6 N -0.60 -6.13 3.01 -172.46 -0.52 -6.65 16 7 C 0.12 1.28 6.58 -3.60 -0.02 1.26 16 8 C 0.04 0.50 5.52 -3.70 -0.02 0.48 16 9 N -0.53 -6.68 4.52 -223.64 -1.01 -7.69 16 10 C 0.07 1.09 2.73 -65.45 -0.18 0.91 16 11 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 12 C -0.12 -1.96 5.03 -24.90 -0.13 -2.09 16 13 C 0.13 2.82 6.16 -3.06 -0.02 2.80 16 14 N -0.60 -14.68 3.07 -169.93 -0.52 -15.20 16 15 C -0.35 -9.97 10.18 -15.06 -0.15 -10.13 16 16 H 0.07 1.99 8.06 -52.48 -0.42 1.56 16 17 C 0.00 -0.01 5.22 -17.43 -0.09 -0.10 16 18 N -0.89 -27.35 13.70 55.49 0.76 -26.59 16 19 Si 1.04 26.08 26.26 -169.99 -4.46 21.61 16 20 H -0.28 -6.74 6.58 56.52 0.37 -6.37 16 21 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C 0.14 2.80 5.96 -2.41 -0.01 2.79 16 24 C 0.04 0.38 5.43 -3.70 -0.02 0.36 16 25 C 0.11 0.95 6.48 -3.61 -0.02 0.93 16 26 N -0.44 -3.73 2.59 -111.25 -0.29 -4.02 16 27 C 0.00 -0.04 10.40 -16.75 -0.17 -0.22 16 28 C -0.20 -1.88 10.86 -39.78 -0.43 -2.31 16 29 C -0.19 -1.69 10.86 -39.78 -0.43 -2.12 16 30 C -0.02 -0.15 10.54 -16.75 -0.18 -0.32 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.62 7.68 -51.93 -0.40 0.22 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.07 7.10 -51.93 -0.37 0.71 16 36 H 0.09 1.17 7.05 -51.93 -0.37 0.80 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.83 7.96 -51.93 -0.41 0.42 16 39 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.60 4.33 -51.93 -0.22 0.38 16 42 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.04 0.74 7.87 -51.93 -0.41 0.33 16 45 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.87 6.64 -51.93 -0.34 0.52 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 0.51 4.70 -51.92 -0.24 0.27 16 49 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 50 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 51 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 52 H 0.16 0.82 8.02 -52.49 -0.42 0.40 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -33.33 399.67 -10.36 -43.69 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.63 Total: -1.64 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.80 Total: -2.40 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -1.58 Total: -60.15 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.09 Total: -7.13 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -4.46 Total: 21.61 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.33 -10.36 -43.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046023468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.571 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds