Wall clock time and date at job start Wed Apr 1 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47493 * 2 1 4 4 C 1.50712 * 109.46750 * 119.99669 * 2 1 3 5 5 O 1.21280 * 119.99992 * 22.64898 * 4 2 1 6 6 N 1.34778 * 119.99645 * 202.64302 * 4 2 1 7 7 C 1.47080 * 120.87605 * 174.71890 * 6 4 2 8 8 C 1.53240 * 108.51823 * 231.20900 * 7 6 4 9 9 N 1.46891 * 109.34148 * 306.16964 * 8 7 6 10 10 C 1.46901 * 111.00309 * 187.25682 * 9 8 7 11 11 H 1.09001 * 110.88246 * 303.88154 * 10 9 8 12 12 C 1.55154 * 111.00644 * 180.02562 * 10 9 8 13 13 C 1.54327 * 102.94191 * 206.42217 * 12 10 9 14 14 N 1.47021 * 107.27014 * 22.19240 * 13 12 10 15 15 C 1.36933 * 125.64674 * 181.02454 * 14 13 12 16 16 H 1.08004 * 120.00017 * 154.84111 * 15 14 13 17 17 C 1.38818 * 120.00309 * 334.83728 * 15 14 13 18 18 N 1.31614 * 120.00407 * 140.70437 * 17 15 14 19 19 Si 1.86805 * 119.99362 * 320.70132 * 17 15 14 20 20 H 1.48492 * 109.47450 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46959 * 239.99892 * 19 17 15 22 22 H 1.48504 * 109.46622 * 120.00325 * 19 17 15 23 23 C 1.47419 * 108.70351 * 1.28624 * 14 13 12 24 24 C 1.46903 * 111.27027 * 63.10793 * 9 8 7 25 25 C 1.47072 * 120.88565 * 354.74665 * 6 4 2 26 26 N 1.46498 * 109.47408 * 239.99523 * 2 1 3 27 27 C 1.36343 * 125.63545 * 299.69464 * 26 2 1 28 28 C 1.34852 * 108.21924 * 179.83027 * 27 26 2 29 29 C 1.40891 * 107.41602 * 0.42725 * 28 27 26 30 30 C 1.34855 * 107.41604 * 359.73255 * 29 28 27 31 31 H 1.09003 * 109.46730 * 54.55788 * 1 2 3 32 32 H 1.09001 * 109.47283 * 174.55324 * 1 2 3 33 33 H 1.09000 * 109.47688 * 294.56040 * 1 2 3 34 34 H 1.09002 * 109.62891 * 111.50049 * 7 6 4 35 35 H 1.09000 * 109.63248 * 350.91792 * 7 6 4 36 36 H 1.09007 * 109.49297 * 186.21347 * 8 7 6 37 37 H 1.09001 * 109.51652 * 66.14588 * 8 7 6 38 38 H 1.08999 * 110.72170 * 88.05924 * 12 10 9 39 39 H 1.09004 * 110.87219 * 324.85298 * 12 10 9 40 40 H 1.09001 * 109.88064 * 262.77339 * 13 12 10 41 41 H 1.08999 * 109.88131 * 141.61141 * 13 12 10 42 42 H 0.97004 * 119.99674 * 4.88972 * 18 17 15 43 43 H 1.08999 * 110.37026 * 94.48279 * 23 14 13 44 44 H 1.09007 * 110.36902 * 216.80484 * 23 14 13 45 45 H 1.08999 * 109.49288 * 56.85148 * 24 9 8 46 46 H 1.08994 * 109.49350 * 176.93458 * 24 9 8 47 47 H 1.09001 * 109.62993 * 248.50080 * 25 6 4 48 48 H 1.09007 * 109.62926 * 9.07707 * 25 6 4 49 49 H 1.08001 * 125.89534 * 359.96402 * 27 26 2 50 50 H 1.07994 * 126.29402 * 180.17030 * 28 27 26 51 51 H 1.07996 * 126.29453 * 179.74077 * 29 28 27 52 52 H 1.08001 * 125.89249 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 1.3204 -1.5080 1.8033 6 7 3.2725 -0.4593 1.6946 7 6 3.7409 -1.0526 2.9563 8 6 4.3045 0.0652 3.8400 9 7 5.3223 0.8124 3.0895 10 6 6.0088 1.7812 3.9544 11 1 5.2944 2.4576 4.4237 12 6 7.0836 2.5708 3.1615 13 6 8.0954 2.9714 4.2558 14 7 7.9221 2.0339 5.3749 15 6 8.6192 2.0601 6.5532 16 1 8.1866 1.6337 7.4462 17 6 9.8821 2.6347 6.6000 18 7 10.2396 3.3540 7.6426 19 14 11.0739 2.3868 5.1831 20 1 10.4346 1.5453 4.1399 21 1 12.3005 1.7132 5.6801 22 1 11.4339 3.7055 4.6027 23 6 6.8780 1.0570 5.0158 24 6 4.7390 1.4756 1.9156 25 6 4.1932 0.4156 0.9530 26 7 2.0184 -0.6907 -1.1961 27 6 1.7657 -1.9903 -1.5217 28 6 2.3800 -2.2589 -2.6918 29 6 3.0442 -1.0849 -3.0985 30 6 2.8056 -0.1418 -2.1645 31 1 -0.3633 0.5960 -0.8373 32 1 -0.3634 -1.0230 -0.0975 33 1 -0.3634 0.4271 0.9346 34 1 4.5217 -1.7845 2.7491 35 1 2.9072 -1.5366 3.4651 36 1 4.7562 -0.3691 4.7320 37 1 3.4994 0.7397 4.1317 38 1 6.6477 3.4553 2.6969 39 1 7.5571 1.9368 2.4119 40 1 7.8958 3.9894 4.5906 41 1 9.1108 2.8997 3.8659 42 1 9.6490 3.4243 8.4088 43 1 7.3280 0.1591 4.5925 44 1 6.2773 0.8053 5.8899 45 1 3.9276 2.1303 2.2336 46 1 5.5057 2.0641 1.4119 47 1 5.0175 -0.1751 0.5532 48 1 3.6585 0.9023 0.1372 49 1 1.1736 -2.6844 -0.9436 50 1 2.3688 -3.2019 -3.2180 51 1 3.6357 -0.9625 -3.9938 52 1 3.1747 0.8730 -2.1806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046023468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:26 Heat of formation + Delta-G solvation = 49.540319 kcal Electronic energy + Delta-G solvation = -31401.915273 eV Core-core repulsion = 27402.935384 eV Total energy + Delta-G solvation = -3998.979888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -42.49637 -41.12456 -40.00146 -38.27424 -35.77492 -35.21410 -34.21115 -32.44109 -31.18259 -30.31285 -29.85108 -29.60262 -27.73291 -26.06027 -25.07359 -24.50890 -22.73319 -22.01712 -21.45181 -21.42801 -20.96276 -19.87850 -19.55719 -18.90052 -18.17976 -17.27214 -17.06572 -16.88620 -16.19710 -15.98434 -15.78504 -15.63519 -15.43007 -15.16751 -15.05225 -14.73315 -14.52114 -14.47280 -14.16844 -13.96092 -13.71034 -13.56187 -13.32169 -13.20249 -13.11235 -13.02810 -12.97658 -12.78637 -12.71991 -12.53725 -12.43619 -12.25718 -12.10035 -11.86596 -11.73561 -11.60136 -11.29345 -11.12409 -10.39721 -9.98122 -9.54763 -9.35268 -9.19724 -9.05100 -8.58910 -5.45305 1.00531 1.31275 1.43937 1.53084 1.74018 1.74687 2.17068 2.20742 2.50553 2.64496 2.95941 3.15506 3.49968 3.53840 3.62822 3.73252 3.85691 3.88966 4.01265 4.09540 4.12865 4.15485 4.21250 4.33800 4.39110 4.41070 4.44582 4.56650 4.58119 4.62302 4.65380 4.75156 4.78352 4.81249 4.83188 4.84965 4.94993 4.97872 5.04412 5.06688 5.14514 5.24905 5.28929 5.41441 5.45063 5.72283 5.94799 6.02790 6.08952 6.15848 6.19438 6.28742 6.44889 6.81960 6.84295 7.52221 8.23291 8.72745 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.002338 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.554496 B =11973.870378 C =12636.019928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.122 3.878 3 H 0.149 0.851 4 C 0.505 3.495 5 O -0.567 6.567 6 N -0.602 5.602 7 C 0.123 3.877 8 C 0.048 3.952 9 N -0.530 5.530 10 C 0.089 3.911 11 H 0.047 0.953 12 C -0.106 4.106 13 C 0.120 3.880 14 N -0.622 5.622 15 C -0.348 4.348 16 H 0.029 0.971 17 C -0.052 4.052 18 N -0.926 5.926 19 Si 1.091 2.909 20 H -0.263 1.263 21 H -0.294 1.294 22 H -0.281 1.281 23 C 0.138 3.862 24 C 0.038 3.962 25 C 0.116 3.884 26 N -0.440 5.440 27 C -0.027 4.027 28 C -0.213 4.213 29 C -0.215 4.215 30 C -0.009 4.009 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.253 0.747 43 H 0.028 0.972 44 H 0.024 0.976 45 H 0.045 0.955 46 H 0.111 0.889 47 H 0.081 0.919 48 H 0.111 0.889 49 H 0.150 0.850 50 H 0.138 0.862 51 H 0.148 0.852 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.460 -4.312 -24.229 31.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.017 3.983 3 H 0.167 0.833 4 C 0.292 3.708 5 O -0.445 6.445 6 N -0.334 5.334 7 C 0.001 3.999 8 C -0.080 4.080 9 N -0.255 5.255 10 C -0.020 4.020 11 H 0.065 0.935 12 C -0.144 4.144 13 C -0.005 4.005 14 N -0.350 5.350 15 C -0.476 4.476 16 H 0.047 0.953 17 C -0.251 4.251 18 N -0.565 5.565 19 Si 0.916 3.084 20 H -0.188 1.188 21 H -0.222 1.222 22 H -0.207 1.207 23 C 0.013 3.987 24 C -0.091 4.091 25 C -0.006 4.006 26 N -0.119 5.119 27 C -0.156 4.156 28 C -0.237 4.237 29 C -0.239 4.239 30 C -0.137 4.137 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.063 0.937 46 H 0.129 0.871 47 H 0.099 0.901 48 H 0.129 0.871 49 H 0.167 0.833 50 H 0.156 0.844 51 H 0.166 0.834 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -18.112 -4.479 -24.241 30.590 hybrid contribution -1.792 -0.271 2.079 2.759 sum -19.904 -4.750 -22.162 30.164 Atomic orbital electron populations 1.21958 0.90437 1.03674 1.04247 1.21597 0.97828 0.98241 0.80673 0.83347 1.21137 0.81094 0.82315 0.86275 1.90707 1.57012 1.35907 1.60824 1.48322 1.13273 1.48202 1.23641 1.21628 0.99276 0.95172 0.83873 1.22395 0.93252 0.95732 0.96665 1.61871 1.28514 1.26793 1.08316 1.22545 0.94297 0.92175 0.93008 0.93469 1.22603 0.94832 1.00494 0.96439 1.21657 0.97598 0.92911 0.88322 1.44739 1.43772 1.30535 1.15936 1.19531 0.98915 1.43324 0.85827 0.95338 1.27182 0.97711 0.95115 1.05120 1.71063 1.43989 1.32268 1.09212 0.83403 0.73935 0.77282 0.73775 1.18845 1.22203 1.20700 1.21687 0.89952 0.92289 0.94792 1.22638 0.99356 0.95610 0.91447 1.22091 0.93053 0.91507 0.93978 1.44029 1.40375 1.10022 1.17461 1.21835 1.07356 0.86583 0.99803 1.21147 1.04549 1.00228 0.97797 1.21184 1.06812 0.93746 1.02159 1.22389 0.99882 1.01010 0.90407 0.89088 0.92395 0.90127 0.90601 0.89547 0.89990 0.94535 0.88124 0.89276 0.96080 0.96132 0.93784 0.95417 0.95731 0.93702 0.87086 0.90062 0.87066 0.83273 0.84428 0.83420 0.78699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.72 71.98 0.63 -1.09 16 2 C 0.12 1.50 2.39 44.25 0.11 1.60 16 3 H 0.15 0.85 6.53 -2.39 -0.02 0.83 16 4 C 0.50 9.74 6.78 87.66 0.59 10.34 16 5 O -0.57 -15.25 15.65 -3.03 -0.05 -15.30 16 6 N -0.60 -10.74 3.01 -817.93 -2.46 -13.20 16 7 C 0.12 2.56 6.58 86.35 0.57 3.12 16 8 C 0.05 1.07 5.52 86.39 0.48 1.54 16 9 N -0.53 -11.84 4.52 -861.47 -3.90 -15.74 16 10 C 0.09 2.57 2.73 46.38 0.13 2.69 16 11 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 12 C -0.11 -2.94 5.03 31.78 0.16 -2.78 16 13 C 0.12 4.91 6.16 86.73 0.53 5.45 16 14 N -0.62 -30.36 3.07 -691.55 -2.12 -32.48 16 15 C -0.35 -20.36 10.18 84.04 0.86 -19.50 16 16 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 17 C -0.05 -3.10 5.22 84.86 0.44 -2.65 16 18 N -0.93 -58.39 13.70 21.65 0.30 -58.10 16 19 Si 1.09 52.62 26.26 68.60 1.80 54.42 16 20 H -0.26 -11.80 6.58 99.48 0.65 -11.15 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 23 C 0.14 5.45 5.96 86.93 0.52 5.97 16 24 C 0.04 0.56 5.43 86.38 0.47 1.03 16 25 C 0.12 1.46 6.48 86.35 0.56 2.02 16 26 N -0.44 -6.19 2.59 -505.90 -1.31 -7.50 16 27 C -0.03 -0.49 10.40 83.21 0.87 0.38 16 28 C -0.21 -3.74 10.86 22.14 0.24 -3.50 16 29 C -0.21 -3.16 10.86 22.14 0.24 -2.92 16 30 C -0.01 -0.10 10.54 83.22 0.88 0.78 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.91 7.68 -2.39 -0.02 0.89 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.95 7.10 -2.39 -0.02 1.94 16 36 H 0.08 2.01 7.05 -2.38 -0.02 1.99 16 37 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 2.10 7.96 -2.39 -0.02 2.08 16 39 H 0.09 2.29 8.10 -2.39 -0.02 2.27 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.02 0.88 4.33 -2.39 -0.01 0.87 16 42 H 0.25 16.06 8.73 -92.71 -0.81 15.25 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.02 1.01 7.87 -2.38 -0.02 0.99 16 45 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.11 1.34 6.64 -2.39 -0.02 1.33 16 47 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.11 0.74 4.70 -2.38 -0.01 0.73 16 49 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 50 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 51 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 52 H 0.20 0.79 8.02 -2.91 -0.02 0.77 16 Total: -1.00 -75.82 399.67 1.32 -74.50 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.80 Total: 10.93 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 8.26 Total: 2.47 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -9.50 Total: -127.02 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.05 Total: -15.30 kcal Atomic # 14 Polarization: 52.62 SS G_CDS: 1.80 Total: 54.42 kcal Total: -75.82 1.32 -74.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046023468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.036 kcal (2) G-P(sol) polarization free energy of solvation -75.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds