Wall clock time and date at job start Wed Apr 1 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46864 * 2 1 4 4 C 1.52994 * 109.47152 * 239.99762 * 2 1 3 5 5 C 1.50702 * 109.46995 * 64.99790 * 4 2 1 6 6 O 1.21276 * 120.00307 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99644 * 180.02562 * 5 4 2 8 8 C 1.45730 * 117.76609 * 0.02562 * 7 5 4 9 9 C 1.53051 * 109.55612 * 218.93243 * 8 7 5 10 10 C 1.52940 * 108.49045 * 306.18283 * 9 8 7 11 11 C 1.52927 * 109.79403 * 65.99387 * 10 9 8 12 12 H 1.08994 * 110.51463 * 67.11882 * 11 10 9 13 13 C 1.44195 * 117.75835 * 180.02562 * 7 5 4 14 14 H 1.08992 * 109.22689 * 26.58918 * 13 7 5 15 15 C 1.54068 * 111.75595 * 266.43487 * 13 7 5 16 16 C 1.54055 * 103.74202 * 206.74348 * 15 13 7 17 17 N 1.46886 * 107.70840 * 17.13441 * 16 15 13 18 18 C 1.36938 * 125.58066 * 182.99714 * 17 16 15 19 19 H 1.08003 * 120.00015 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00020 * 359.97438 * 18 17 16 21 21 N 1.31618 * 119.99839 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99575 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47106 * 60.00453 * 22 20 18 24 24 H 1.48507 * 109.46743 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47413 * 299.99802 * 22 20 18 26 26 C 1.50700 * 109.46927 * 119.99583 * 2 1 3 27 27 C 1.39875 * 126.03966 * 60.02977 * 26 2 1 28 28 N 1.30838 * 108.20344 * 179.97438 * 27 26 2 29 29 N 1.40082 * 108.20522 * 359.97438 * 28 27 26 30 30 C 1.46502 * 126.03768 * 180.02562 * 29 28 27 31 31 C 1.34953 * 107.92857 * 359.75772 * 29 28 27 32 32 H 1.08999 * 109.47357 * 180.02562 * 1 2 3 33 33 H 1.09012 * 109.47034 * 300.00330 * 1 2 3 34 34 H 1.08995 * 109.47257 * 60.00098 * 1 2 3 35 35 H 1.09008 * 109.47060 * 305.00004 * 4 2 1 36 36 H 1.09003 * 109.47450 * 185.00258 * 4 2 1 37 37 H 1.09008 * 109.45914 * 98.90272 * 8 7 5 38 38 H 1.09000 * 109.44530 * 338.95264 * 8 7 5 39 39 H 1.09006 * 109.63381 * 186.48388 * 9 8 7 40 40 H 1.08992 * 109.79827 * 65.98512 * 9 8 7 41 41 H 1.09000 * 109.42205 * 305.88727 * 10 9 8 42 42 H 1.09002 * 109.36179 * 186.05140 * 10 9 8 43 43 H 1.08998 * 110.57215 * 88.18392 * 15 13 7 44 44 H 1.08997 * 110.57482 * 325.30848 * 15 13 7 45 45 H 1.08998 * 109.81181 * 257.58405 * 16 15 13 46 46 H 1.09004 * 109.81125 * 136.68381 * 16 15 13 47 47 H 0.97001 * 119.99727 * 179.97438 * 21 20 18 48 48 H 1.07996 * 125.89488 * 359.94557 * 27 26 2 49 49 H 1.09001 * 109.46849 * 90.02592 * 30 29 28 50 50 H 1.08997 * 109.46963 * 210.02128 * 30 29 28 51 51 H 1.08995 * 109.47335 * 330.02474 * 30 29 28 52 52 H 1.07995 * 126.13233 * 180.24099 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4765 6 8 1.0116 1.0873 -2.3633 7 7 1.9844 -0.3921 -3.7001 8 6 2.7402 -1.6355 -3.7796 9 6 3.7971 -1.5231 -4.8808 10 6 3.1031 -1.1066 -6.1785 11 6 2.5382 0.3071 -6.0330 12 1 3.3456 1.0338 -5.9439 13 6 1.5785 0.3907 -4.8410 14 1 1.4701 1.4329 -4.5410 15 6 0.2356 -0.0957 -5.4187 16 6 0.3052 0.3148 -6.9020 17 7 1.7114 0.5923 -7.2232 18 6 2.1793 1.0426 -8.4288 19 1 3.2361 1.2178 -8.5666 20 6 1.2955 1.2739 -9.4739 21 7 0.0077 1.0599 -9.3062 22 14 1.9339 1.8888 -11.1182 23 1 2.8974 0.9052 -11.6743 24 1 0.7973 2.0556 -12.0594 25 1 2.6142 3.1951 -10.9280 26 6 2.0323 -0.7103 1.2305 27 6 1.7738 -2.0409 1.5758 28 7 2.3782 -2.2941 2.7083 29 7 3.0417 -1.1311 3.1198 30 6 3.8419 -0.9805 4.3377 31 6 2.8187 -0.1756 2.1933 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8901 34 1 -0.3633 0.5138 -0.8899 35 1 1.6053 -1.7199 -1.2950 36 1 3.1263 -0.7996 -1.2055 37 1 2.0628 -2.4582 -4.0090 38 1 3.2299 -1.8242 -2.8242 39 1 4.2852 -2.4878 -5.0199 40 1 4.5390 -0.7736 -4.6053 41 1 2.2911 -1.8009 -6.3942 42 1 3.8237 -1.1264 -6.9961 43 1 -0.5976 0.4018 -4.9224 44 1 0.1477 -1.1780 -5.3247 45 1 -0.2948 1.2099 -7.0661 46 1 -0.0633 -0.4979 -7.5279 47 1 -0.6100 1.2219 -10.0364 48 1 1.1780 -2.7386 1.0061 49 1 4.8792 -1.2393 4.1252 50 1 3.7883 0.0522 4.6822 51 1 3.4536 -1.6424 5.1118 52 1 3.1973 0.8355 2.2173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049614123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:58 Heat of formation + Delta-G solvation = 69.297041 kcal Electronic energy + Delta-G solvation = -31259.316798 eV Core-core repulsion = 27261.193626 eV Total energy + Delta-G solvation = -3998.123173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.50383 -40.41908 -38.11890 -35.43846 -35.27649 -33.02204 -32.52683 -32.25053 -30.00066 -29.17178 -28.46714 -27.50685 -26.77078 -24.46167 -24.33509 -22.83135 -21.89783 -21.35853 -20.49478 -19.97714 -19.31572 -17.98595 -17.36604 -16.86138 -16.62068 -15.80412 -15.70312 -15.27939 -14.73921 -14.65362 -14.48479 -14.25889 -13.88752 -13.69368 -13.54431 -13.40501 -13.24240 -12.99746 -12.96520 -12.71274 -12.42912 -12.35618 -12.01944 -11.91789 -11.51013 -11.39881 -11.20856 -11.14326 -10.94662 -10.91475 -10.72599 -10.60980 -10.55015 -10.40849 -10.10133 -10.01000 -9.66616 -9.62071 -9.52822 -9.32772 -8.57998 -8.57443 -8.22215 -6.83801 -5.68892 -3.03531 1.64093 2.25889 2.56989 2.85696 3.28145 3.41827 3.46141 3.47352 4.19743 4.50051 4.56648 4.61415 4.74317 4.77883 4.89189 5.00221 5.03599 5.06079 5.16265 5.21473 5.33811 5.43699 5.46825 5.47935 5.52278 5.57552 5.61158 5.64728 5.68774 5.75945 5.87969 5.94586 6.04656 6.09190 6.13590 6.27444 6.28295 6.33868 6.37791 6.42770 6.51133 6.62471 6.64185 6.73812 6.79819 7.04199 7.15365 7.45242 7.59160 7.62863 7.70147 7.86088 8.27562 8.46732 9.23340 9.83170 10.48462 11.41815 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.002173 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.605893 B =12885.199326 C =13272.508634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.005 3.995 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.504 3.496 6 O -0.538 6.538 7 N -0.589 5.589 8 C 0.109 3.891 9 C -0.132 4.132 10 C -0.130 4.130 11 C 0.161 3.839 12 H 0.053 0.947 13 C 0.137 3.863 14 H 0.091 0.909 15 C -0.150 4.150 16 C 0.179 3.821 17 N -0.596 5.596 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.225 4.225 27 C 0.055 3.945 28 N -0.300 5.300 29 N -0.380 5.380 30 C 0.103 3.897 31 C 0.055 3.945 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.039 0.961 47 H 0.253 0.747 48 H 0.181 0.819 49 H 0.073 0.927 50 H 0.086 0.914 51 H 0.087 0.913 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 -6.534 24.478 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 H 0.100 0.900 4 C -0.170 4.170 5 C 0.292 3.708 6 O -0.416 6.416 7 N -0.320 5.320 8 C -0.014 4.014 9 C -0.171 4.171 10 C -0.171 4.171 11 C 0.052 3.948 12 H 0.071 0.929 13 C 0.033 3.967 14 H 0.109 0.891 15 C -0.189 4.189 16 C 0.054 3.946 17 N -0.320 5.320 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.236 4.236 27 C -0.131 4.131 28 N -0.122 5.122 29 N -0.163 5.163 30 C -0.039 4.039 31 C -0.091 4.091 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.198 0.802 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.106 0.894 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 7.095 -6.778 25.306 27.142 hybrid contribution 0.240 0.731 -1.575 1.753 sum 7.336 -6.047 23.731 25.565 Atomic orbital electron populations 1.21923 0.94095 1.01457 1.02931 1.19137 0.96081 0.98141 0.88125 0.90033 1.21784 1.02540 1.00205 0.92504 1.20754 0.79585 0.85736 0.84698 1.90652 1.39906 1.24644 1.86352 1.47120 1.54593 1.24186 1.06133 1.21505 0.93929 0.86136 0.99859 1.21838 0.97495 1.01567 0.96173 1.22121 0.99998 0.99485 0.95474 1.20914 0.92771 0.94172 0.86912 0.92869 1.21054 0.94929 0.95602 0.85163 0.89100 1.22981 0.96492 0.99931 0.99529 1.21052 0.86080 0.99744 0.87680 1.44516 1.02005 1.77511 1.07995 1.18963 0.92549 1.37129 0.86907 0.90512 1.24806 0.95520 1.01736 0.98290 1.69965 1.00986 1.54250 1.31530 0.86202 0.77371 0.78679 0.83494 1.21223 1.21637 1.21179 1.20129 1.07507 0.95317 1.00665 1.23751 0.99112 0.96161 0.94056 1.77347 1.13540 1.06000 1.15283 1.48434 1.40358 1.08497 1.19004 1.21826 0.94557 1.03494 0.83998 1.22364 1.00225 0.95742 0.90752 0.93391 0.93193 0.90252 0.89082 0.89136 0.91975 0.90294 0.91243 0.91772 0.91996 0.91974 0.91981 0.92712 0.93026 0.94259 0.93694 0.80226 0.90846 0.89557 0.89419 0.81028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.82 37.16 0.33 -1.29 16 2 C 0.01 0.05 2.40 -91.78 -0.22 -0.17 16 3 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 4 C -0.13 -1.32 3.36 -27.88 -0.09 -1.41 16 5 C 0.50 7.22 7.30 -10.98 -0.08 7.14 16 6 O -0.54 -9.53 13.24 5.56 0.07 -9.46 16 7 N -0.59 -8.73 2.80 -167.55 -0.47 -9.20 16 8 C 0.11 1.27 6.06 -4.43 -0.03 1.24 16 9 C -0.13 -1.67 6.10 -26.74 -0.16 -1.83 16 10 C -0.13 -2.26 5.31 -26.80 -0.14 -2.40 16 11 C 0.16 3.26 3.30 -67.17 -0.22 3.04 16 12 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 13 C 0.14 2.56 2.73 -68.46 -0.19 2.37 16 14 H 0.09 1.90 7.07 -51.93 -0.37 1.54 16 15 C -0.15 -2.98 6.45 -25.62 -0.17 -3.15 16 16 C 0.18 4.41 5.39 -3.28 -0.02 4.39 16 17 N -0.60 -14.95 2.94 -163.69 -0.48 -15.44 16 18 C -0.23 -6.24 10.27 -15.06 -0.15 -6.39 16 19 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -27.03 10.29 55.49 0.57 -26.46 16 22 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C -0.22 -2.12 4.80 -105.05 -0.50 -2.63 16 27 C 0.06 0.54 11.54 -17.36 -0.20 0.34 16 28 N -0.30 -3.29 12.58 30.63 0.39 -2.90 16 29 N -0.38 -3.32 4.01 -68.16 -0.27 -3.60 16 30 C 0.10 0.47 11.47 59.85 0.69 1.15 16 31 C 0.05 0.46 11.38 -17.22 -0.20 0.26 16 32 H 0.05 0.47 8.02 -51.93 -0.42 0.06 16 33 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 34 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 35 H 0.09 0.79 8.03 -51.92 -0.42 0.37 16 36 H 0.09 0.81 7.32 -51.93 -0.38 0.43 16 37 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.08 0.70 5.81 -51.93 -0.30 0.40 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.15 8.02 -51.93 -0.42 0.74 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.42 7.25 -51.93 -0.38 1.05 16 46 H 0.04 1.06 7.60 -51.93 -0.39 0.66 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 49 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 51 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 52 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 403.70 15.07 6.08 6.08 Total: -1.00 -33.70 403.70 -9.42 -43.12 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.83 Total: 0.41 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.45 Total: 0.38 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.27 Total: -57.60 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.07 Total: -9.46 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.70 -9.42 -43.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049614123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.419 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds