Wall clock time and date at job start Wed Apr 1 2020 05:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46864 * 2 1 4 4 C 1.52994 * 109.47152 * 239.99762 * 2 1 3 5 5 C 1.50702 * 109.46995 * 64.99790 * 4 2 1 6 6 O 1.21276 * 120.00307 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99644 * 180.02562 * 5 4 2 8 8 C 1.45730 * 117.76609 * 0.02562 * 7 5 4 9 9 C 1.53051 * 109.55612 * 218.93243 * 8 7 5 10 10 C 1.52940 * 108.49045 * 306.18283 * 9 8 7 11 11 C 1.52927 * 109.79403 * 65.99387 * 10 9 8 12 12 H 1.08994 * 110.51463 * 67.11882 * 11 10 9 13 13 C 1.44195 * 117.75835 * 180.02562 * 7 5 4 14 14 H 1.08992 * 109.22689 * 26.58918 * 13 7 5 15 15 C 1.54068 * 111.75595 * 266.43487 * 13 7 5 16 16 C 1.54055 * 103.74202 * 206.74348 * 15 13 7 17 17 N 1.46886 * 107.70840 * 17.13441 * 16 15 13 18 18 C 1.36938 * 125.58066 * 182.99714 * 17 16 15 19 19 H 1.08003 * 120.00015 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00020 * 359.97438 * 18 17 16 21 21 N 1.31618 * 119.99839 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99575 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47106 * 60.00453 * 22 20 18 24 24 H 1.48507 * 109.46743 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47413 * 299.99802 * 22 20 18 26 26 C 1.50700 * 109.46927 * 119.99583 * 2 1 3 27 27 C 1.39875 * 126.03966 * 60.02977 * 26 2 1 28 28 N 1.30838 * 108.20344 * 179.97438 * 27 26 2 29 29 N 1.40082 * 108.20522 * 359.97438 * 28 27 26 30 30 C 1.46502 * 126.03768 * 180.02562 * 29 28 27 31 31 C 1.34953 * 107.92857 * 359.75772 * 29 28 27 32 32 H 1.08999 * 109.47357 * 180.02562 * 1 2 3 33 33 H 1.09012 * 109.47034 * 300.00330 * 1 2 3 34 34 H 1.08995 * 109.47257 * 60.00098 * 1 2 3 35 35 H 1.09008 * 109.47060 * 305.00004 * 4 2 1 36 36 H 1.09003 * 109.47450 * 185.00258 * 4 2 1 37 37 H 1.09008 * 109.45914 * 98.90272 * 8 7 5 38 38 H 1.09000 * 109.44530 * 338.95264 * 8 7 5 39 39 H 1.09006 * 109.63381 * 186.48388 * 9 8 7 40 40 H 1.08992 * 109.79827 * 65.98512 * 9 8 7 41 41 H 1.09000 * 109.42205 * 305.88727 * 10 9 8 42 42 H 1.09002 * 109.36179 * 186.05140 * 10 9 8 43 43 H 1.08998 * 110.57215 * 88.18392 * 15 13 7 44 44 H 1.08997 * 110.57482 * 325.30848 * 15 13 7 45 45 H 1.08998 * 109.81181 * 257.58405 * 16 15 13 46 46 H 1.09004 * 109.81125 * 136.68381 * 16 15 13 47 47 H 0.97001 * 119.99727 * 179.97438 * 21 20 18 48 48 H 1.07996 * 125.89488 * 359.94557 * 27 26 2 49 49 H 1.09001 * 109.46849 * 90.02592 * 30 29 28 50 50 H 1.08997 * 109.46963 * 210.02128 * 30 29 28 51 51 H 1.08995 * 109.47335 * 330.02474 * 30 29 28 52 52 H 1.07995 * 126.13233 * 180.24099 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4765 6 8 1.0116 1.0873 -2.3633 7 7 1.9844 -0.3921 -3.7001 8 6 2.7402 -1.6355 -3.7796 9 6 3.7971 -1.5231 -4.8808 10 6 3.1031 -1.1066 -6.1785 11 6 2.5382 0.3071 -6.0330 12 1 3.3456 1.0338 -5.9439 13 6 1.5785 0.3907 -4.8410 14 1 1.4701 1.4329 -4.5410 15 6 0.2356 -0.0957 -5.4187 16 6 0.3052 0.3148 -6.9020 17 7 1.7114 0.5923 -7.2232 18 6 2.1793 1.0426 -8.4288 19 1 3.2361 1.2178 -8.5666 20 6 1.2955 1.2739 -9.4739 21 7 0.0077 1.0599 -9.3062 22 14 1.9339 1.8888 -11.1182 23 1 2.8974 0.9052 -11.6743 24 1 0.7973 2.0556 -12.0594 25 1 2.6142 3.1951 -10.9280 26 6 2.0323 -0.7103 1.2305 27 6 1.7738 -2.0409 1.5758 28 7 2.3782 -2.2941 2.7083 29 7 3.0417 -1.1311 3.1198 30 6 3.8419 -0.9805 4.3377 31 6 2.8187 -0.1756 2.1933 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8901 34 1 -0.3633 0.5138 -0.8899 35 1 1.6053 -1.7199 -1.2950 36 1 3.1263 -0.7996 -1.2055 37 1 2.0628 -2.4582 -4.0090 38 1 3.2299 -1.8242 -2.8242 39 1 4.2852 -2.4878 -5.0199 40 1 4.5390 -0.7736 -4.6053 41 1 2.2911 -1.8009 -6.3942 42 1 3.8237 -1.1264 -6.9961 43 1 -0.5976 0.4018 -4.9224 44 1 0.1477 -1.1780 -5.3247 45 1 -0.2948 1.2099 -7.0661 46 1 -0.0633 -0.4979 -7.5279 47 1 -0.6100 1.2219 -10.0364 48 1 1.1780 -2.7386 1.0061 49 1 4.8792 -1.2393 4.1252 50 1 3.7883 0.0522 4.6822 51 1 3.4536 -1.6424 5.1118 52 1 3.1973 0.8355 2.2173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049614123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:57 Heat of formation + Delta-G solvation = 49.293763 kcal Electronic energy + Delta-G solvation = -31260.184206 eV Core-core repulsion = 27261.193626 eV Total energy + Delta-G solvation = -3998.990580 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.17309 -41.65371 -39.53348 -36.86030 -36.17385 -34.22825 -33.84345 -33.55240 -31.17370 -30.48313 -29.92616 -28.60324 -27.29848 -26.31979 -25.69147 -23.75399 -23.14527 -22.11706 -21.94169 -21.30860 -20.25418 -19.34560 -18.71975 -18.36666 -17.34512 -16.93540 -16.78145 -16.47676 -16.23203 -16.01070 -15.50847 -15.24456 -15.15123 -14.96887 -14.65753 -14.51447 -14.18423 -13.99359 -13.81362 -13.65801 -13.58306 -13.56138 -13.29098 -13.14376 -13.03455 -12.79262 -12.60293 -12.40827 -12.29178 -12.21350 -12.10226 -12.06068 -11.86559 -11.77325 -11.57084 -11.48908 -11.27157 -11.13985 -10.68765 -10.52386 -10.28874 -9.50663 -9.22378 -8.89847 -7.83222 -5.19914 1.03274 1.45376 1.49118 1.55182 1.74578 1.77411 1.88393 2.12866 2.50929 3.33778 3.50608 3.63659 3.75147 3.90160 3.94185 4.04428 4.06903 4.13816 4.18886 4.22466 4.29575 4.38135 4.41072 4.49090 4.52941 4.63080 4.65399 4.68517 4.74268 4.75233 4.81934 4.84214 4.88669 4.91141 4.92592 5.00739 5.09848 5.13269 5.22538 5.29803 5.39579 5.43241 5.50429 5.55484 5.57880 5.65058 5.74597 5.77859 5.82440 6.19866 6.21089 6.53633 6.82394 7.09664 7.33505 7.76971 8.41422 9.26433 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.002173 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.605893 B =12885.199326 C =13272.508634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.014 3.986 3 H 0.069 0.931 4 C -0.119 4.119 5 C 0.501 3.499 6 O -0.578 6.578 7 N -0.590 5.590 8 C 0.104 3.896 9 C -0.122 4.122 10 C -0.121 4.121 11 C 0.155 3.845 12 H 0.047 0.953 13 C 0.156 3.844 14 H 0.062 0.938 15 C -0.134 4.134 16 C 0.192 3.808 17 N -0.616 5.616 18 C -0.236 4.236 19 H 0.084 0.916 20 C -0.069 4.069 21 N -0.952 5.952 22 Si 0.979 3.021 23 H -0.274 1.274 24 H -0.296 1.296 25 H -0.278 1.278 26 C -0.237 4.237 27 C 0.051 3.949 28 N -0.336 5.336 29 N -0.383 5.383 30 C 0.094 3.906 31 C 0.058 3.942 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.009 0.991 46 H 0.008 0.992 47 H 0.246 0.754 48 H 0.195 0.805 49 H 0.085 0.915 50 H 0.111 0.889 51 H 0.087 0.913 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 -8.100 26.801 29.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.006 4.006 3 H 0.088 0.912 4 C -0.158 4.158 5 C 0.292 3.708 6 O -0.458 6.458 7 N -0.322 5.322 8 C -0.018 4.018 9 C -0.160 4.160 10 C -0.161 4.161 11 C 0.048 3.952 12 H 0.065 0.935 13 C 0.050 3.950 14 H 0.080 0.920 15 C -0.173 4.173 16 C 0.067 3.933 17 N -0.341 5.341 18 C -0.365 4.365 19 H 0.101 0.899 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.808 3.192 23 H -0.200 1.200 24 H -0.223 1.223 25 H -0.204 1.204 26 C -0.248 4.248 27 C -0.134 4.134 28 N -0.158 5.158 29 N -0.165 5.165 30 C -0.046 4.046 31 C -0.088 4.088 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.028 0.972 46 H 0.026 0.974 47 H 0.055 0.945 48 H 0.212 0.788 49 H 0.103 0.897 50 H 0.129 0.871 51 H 0.106 0.894 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.708 -8.384 27.686 30.513 hybrid contribution -0.529 1.272 -2.209 2.604 sum 9.178 -7.112 25.477 27.998 Atomic orbital electron populations 1.21860 0.95120 1.01717 1.01368 1.18970 0.95138 0.97719 0.88766 0.91213 1.21819 1.04054 1.00314 0.89657 1.21575 0.78467 0.85389 0.85412 1.90653 1.41578 1.26655 1.86868 1.47172 1.55082 1.24972 1.04938 1.21843 0.93721 0.84557 1.01644 1.21805 0.97519 1.03325 0.93372 1.21911 0.99414 0.96638 0.98121 1.21134 0.92357 0.95954 0.85729 0.93511 1.20504 0.93569 0.94898 0.86007 0.92012 1.22772 0.97534 1.00887 0.96124 1.20704 0.85660 0.96694 0.90269 1.44778 1.02857 1.77588 1.08900 1.19359 0.92929 1.36203 0.87961 0.89860 1.25677 0.95796 1.02720 1.01934 1.70199 1.02102 1.55767 1.32064 0.85139 0.76639 0.78396 0.79069 1.20032 1.22261 1.20432 1.20012 1.08656 0.95362 1.00812 1.24031 0.98930 0.96558 0.93891 1.77299 1.14846 1.07569 1.16122 1.48761 1.40048 1.07913 1.19817 1.22142 0.94592 1.05179 0.82731 1.22808 0.99291 0.96601 0.90129 0.92199 0.93257 0.93232 0.86640 0.86706 0.90869 0.86065 0.87965 0.91148 0.93466 0.93314 0.92143 0.90882 0.97237 0.97429 0.94486 0.78808 0.89699 0.87093 0.89384 0.78551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.82 71.98 0.64 -2.36 16 2 C 0.01 0.26 2.40 -11.54 -0.03 0.23 16 3 H 0.07 1.43 7.92 -2.39 -0.02 1.41 16 4 C -0.12 -1.97 3.36 29.85 0.10 -1.87 16 5 C 0.50 13.40 7.30 87.66 0.64 14.04 16 6 O -0.58 -20.47 13.24 -3.02 -0.04 -20.51 16 7 N -0.59 -16.26 2.80 -802.41 -2.25 -18.51 16 8 C 0.10 1.97 6.06 86.54 0.52 2.49 16 9 C -0.12 -2.61 6.10 30.59 0.19 -2.43 16 10 C -0.12 -4.04 5.31 30.55 0.16 -3.88 16 11 C 0.16 6.34 3.30 44.82 0.15 6.49 16 12 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 13 C 0.16 5.87 2.73 45.87 0.13 6.00 16 14 H 0.06 2.68 7.07 -2.39 -0.02 2.67 16 15 C -0.13 -5.46 6.45 31.31 0.20 -5.25 16 16 C 0.19 10.01 5.39 86.66 0.47 10.48 16 17 N -0.62 -32.13 2.94 -671.79 -1.97 -34.10 16 18 C -0.24 -13.31 10.27 84.03 0.86 -12.45 16 19 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 20 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 21 N -0.95 -58.72 10.29 21.65 0.22 -58.50 16 22 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 C -0.24 -3.80 4.80 -20.14 -0.10 -3.90 16 27 C 0.05 0.86 11.54 85.24 0.98 1.85 16 28 N -0.34 -6.62 12.58 -57.02 -0.72 -7.34 16 29 N -0.38 -5.67 4.01 -369.57 -1.48 -7.15 16 30 C 0.09 0.59 11.47 127.77 1.47 2.06 16 31 C 0.06 0.80 11.38 83.54 0.95 1.75 16 32 H 0.06 1.07 8.02 -2.39 -0.02 1.05 16 33 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.05 1.35 5.95 -2.39 -0.01 1.33 16 35 H 0.12 1.43 8.03 -2.38 -0.02 1.41 16 36 H 0.11 1.44 7.32 -2.39 -0.02 1.42 16 37 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.12 1.37 5.81 -2.39 -0.01 1.36 16 39 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.71 8.02 -2.39 -0.02 1.69 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.01 0.56 7.25 -2.39 -0.02 0.54 16 46 H 0.01 0.43 7.60 -2.39 -0.02 0.41 16 47 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 48 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 49 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 51 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 52 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -78.83 403.70 4.48 -74.35 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.89 Total: 13.49 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 7.80 Total: 9.75 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -6.19 Total: -125.59 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.04 Total: -20.51 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -78.83 4.48 -74.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049614123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.641 kcal (2) G-P(sol) polarization free energy of solvation -78.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds