Wall clock time and date at job start Wed Apr 1 2020 05:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46802 * 119.57680 * 0.02562 * 7 5 4 9 9 C 1.54490 * 106.67228 * 126.53859 * 8 7 5 10 10 C 1.52741 * 107.46303 * 60.00836 * 9 8 7 11 11 C 1.53013 * 110.80153 * 294.83464 * 10 9 8 12 12 H 1.08996 * 111.38711 * 291.24223 * 11 10 9 13 13 C 1.45125 * 119.57554 * 180.27710 * 7 5 4 14 14 H 1.08991 * 109.96866 * 348.03930 * 13 7 5 15 15 C 1.54420 * 111.60507 * 111.32635 * 13 7 5 16 16 C 1.54571 * 102.44722 * 156.57437 * 15 13 7 17 17 N 1.47119 * 107.25463 * 338.33248 * 16 15 13 18 18 C 1.36934 * 125.76804 * 177.43318 * 17 16 15 19 19 H 1.08002 * 120.00110 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00348 * 359.96097 * 18 17 16 21 21 N 1.31625 * 119.99501 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00487 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47105 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47164 * 119.99775 * 22 20 18 25 25 H 1.48501 * 109.47151 * 239.99748 * 22 20 18 26 26 C 1.50695 * 109.46934 * 119.99972 * 2 1 3 27 27 C 1.39866 * 126.04003 * 59.69988 * 26 2 1 28 28 N 1.30840 * 108.20396 * 179.81269 * 27 26 2 29 29 N 1.40086 * 108.20304 * 0.43405 * 28 27 26 30 30 C 1.46500 * 126.03597 * 179.73872 * 29 28 27 31 31 C 1.34949 * 107.92526 * 359.71842 * 29 28 27 32 32 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 34 34 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 35 35 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 36 36 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 37 37 H 1.08999 * 109.83413 * 247.49665 * 8 7 5 38 38 H 1.08994 * 109.83129 * 8.44918 * 8 7 5 39 39 H 1.08999 * 111.27766 * 299.97094 * 9 8 7 40 40 H 1.08995 * 109.13804 * 178.83517 * 9 8 7 41 41 H 1.08998 * 109.21222 * 174.49426 * 10 9 8 42 42 H 1.09005 * 109.17712 * 55.15212 * 10 9 8 43 43 H 1.08995 * 110.81202 * 274.81056 * 15 13 7 44 44 H 1.08999 * 110.80997 * 38.34040 * 15 13 7 45 45 H 1.08996 * 109.88597 * 218.92065 * 16 15 13 46 46 H 1.08998 * 110.01681 * 97.81385 * 16 15 13 47 47 H 0.96997 * 119.99760 * 179.97438 * 21 20 18 48 48 H 1.08006 * 125.89849 * 359.97438 * 27 26 2 49 49 H 1.08999 * 109.47271 * 269.97755 * 30 29 28 50 50 H 1.08998 * 109.47081 * 29.97845 * 30 29 28 51 51 H 1.08994 * 109.47022 * 149.97716 * 30 29 28 52 52 H 1.08002 * 126.12537 * 179.97438 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 2.7571 -1.6336 -3.8260 9 6 1.9756 -2.5388 -4.8040 10 6 1.8770 -1.7971 -6.1356 11 6 1.0348 -0.5280 -5.9897 12 1 -0.0140 -0.7652 -5.8118 13 6 1.6061 0.3714 -4.8752 14 1 0.8781 1.1356 -4.6031 15 6 2.8321 1.0063 -5.5669 16 6 2.3309 1.2065 -7.0153 17 7 1.2082 0.2782 -7.2208 18 6 0.4519 0.1760 -8.3578 19 1 -0.3536 -0.5416 -8.4079 20 6 0.7203 0.9951 -9.4459 21 7 1.7016 1.8703 -9.3845 22 14 -0.3109 0.8553 -10.9971 23 1 -1.3426 -0.1966 -10.8124 24 1 -0.9729 2.1562 -11.2703 25 1 0.5636 0.4949 -12.1419 26 6 2.0323 -0.7104 1.2304 27 6 1.7686 -2.0390 1.5788 28 7 2.3776 -2.2940 2.7084 29 7 3.0410 -1.1309 3.1202 30 6 3.8407 -0.9803 4.3383 31 6 2.8136 -0.1739 2.1963 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.6054 -1.7197 -1.2952 36 1 3.1263 -0.7993 -1.2057 37 1 3.7582 -1.4150 -4.1977 38 1 2.8214 -2.1281 -2.8568 39 1 0.9748 -2.7543 -4.4298 40 1 2.5232 -3.4708 -4.9434 41 1 1.4161 -2.4502 -6.8767 42 1 2.8786 -1.5265 -6.4698 43 1 3.0832 1.9627 -5.1084 44 1 3.6849 0.3280 -5.5425 45 1 3.1319 0.9811 -7.7193 46 1 1.9931 2.2334 -7.1547 47 1 1.8894 2.4424 -10.1450 48 1 1.1682 -2.7352 1.0119 49 1 3.2002 -0.6461 5.1545 50 1 4.2906 -1.9384 4.5984 51 1 4.6265 -0.2443 4.1684 52 1 3.1877 0.8389 2.2233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049614125.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:05 Heat of formation + Delta-G solvation = 70.180845 kcal Electronic energy + Delta-G solvation = -31257.325190 eV Core-core repulsion = 27259.240341 eV Total energy + Delta-G solvation = -3998.084848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.50026 -40.31531 -38.16505 -35.39138 -35.17557 -33.01112 -32.32659 -32.20399 -29.98588 -29.13993 -28.39068 -27.49102 -26.76967 -24.51808 -24.24352 -22.81645 -21.95381 -21.35231 -20.41602 -19.99085 -19.30515 -18.04143 -17.35004 -16.85714 -16.61654 -15.74996 -15.59950 -15.33002 -14.74393 -14.66711 -14.35920 -14.30723 -13.93819 -13.63051 -13.60517 -13.24170 -13.20607 -13.06559 -12.80150 -12.74241 -12.59214 -12.19898 -12.05093 -11.91760 -11.51719 -11.37358 -11.19963 -11.11444 -10.98953 -10.92485 -10.78052 -10.62483 -10.54140 -10.40285 -10.04021 -10.00008 -9.66624 -9.61777 -9.57395 -9.34079 -8.60719 -8.57799 -8.19058 -6.83960 -5.69500 -3.03442 1.64132 2.25893 2.57026 2.86862 3.27466 3.41210 3.46901 3.49095 4.19897 4.50114 4.57120 4.62076 4.74762 4.78184 4.90225 4.99528 5.01595 5.07851 5.21267 5.22204 5.32921 5.40155 5.46545 5.47792 5.52785 5.58192 5.62721 5.64650 5.68734 5.75168 5.88194 5.90786 6.03522 6.09136 6.14966 6.25350 6.28163 6.34469 6.37800 6.39891 6.50844 6.54249 6.64624 6.73819 6.78245 7.03548 7.10519 7.45229 7.57638 7.63043 7.71726 7.85075 8.25568 8.46862 9.22499 9.82277 10.48401 11.41773 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027532 B = 0.002159 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.745268 B =12965.921495 C =13140.357170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.005 3.995 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.509 3.491 6 O -0.541 6.541 7 N -0.595 5.595 8 C 0.106 3.894 9 C -0.132 4.132 10 C -0.131 4.131 11 C 0.156 3.844 12 H 0.057 0.943 13 C 0.131 3.869 14 H 0.101 0.899 15 C -0.151 4.151 16 C 0.180 3.820 17 N -0.598 5.598 18 C -0.224 4.224 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.225 4.225 27 C 0.055 3.945 28 N -0.300 5.300 29 N -0.380 5.380 30 C 0.103 3.897 31 C 0.055 3.945 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.040 0.960 46 H 0.052 0.948 47 H 0.251 0.749 48 H 0.181 0.819 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 -7.451 24.493 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 H 0.100 0.900 4 C -0.170 4.170 5 C 0.297 3.703 6 O -0.419 6.419 7 N -0.327 5.327 8 C -0.017 4.017 9 C -0.171 4.171 10 C -0.171 4.171 11 C 0.047 3.953 12 H 0.075 0.925 13 C 0.027 3.973 14 H 0.119 0.881 15 C -0.191 4.191 16 C 0.055 3.945 17 N -0.322 5.322 18 C -0.353 4.353 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.236 4.236 27 C -0.131 4.131 28 N -0.122 5.122 29 N -0.163 5.163 30 C -0.039 4.039 31 C -0.091 4.091 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.198 0.802 49 H 0.091 0.909 50 H 0.106 0.894 51 H 0.105 0.895 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.843 -7.640 25.342 27.106 hybrid contribution -0.423 0.473 -1.547 1.673 sum 5.420 -7.166 23.795 25.435 Atomic orbital electron populations 1.21925 0.94113 1.01451 1.02931 1.19135 0.96054 0.98146 0.88132 0.90037 1.21755 1.02588 1.00158 0.92478 1.20692 0.79324 0.85719 0.84541 1.90653 1.40290 1.24730 1.86214 1.47689 1.54428 1.24520 1.06034 1.22070 0.95029 0.84332 1.00241 1.22099 1.00200 0.97783 0.96981 1.22112 1.01690 0.98061 0.95249 1.21317 0.96599 0.90376 0.86960 0.92470 1.21738 0.97535 0.94196 0.83843 0.88094 1.23100 0.97039 0.99589 0.99335 1.21172 0.89969 0.94752 0.88597 1.44696 1.36063 1.40667 1.10800 1.19079 1.09842 1.16648 0.89689 0.90400 1.24801 0.98774 0.98571 0.98343 1.69973 1.31486 1.25063 1.30340 0.86050 0.79289 0.77263 0.83191 1.20528 1.21787 1.21849 1.20124 1.07617 0.95343 1.00540 1.23748 0.99103 0.96215 0.94012 1.77348 1.13478 1.06026 1.15325 1.48433 1.40437 1.08347 1.19074 1.21826 0.94367 1.04010 0.83673 1.22365 1.00394 0.95641 0.90674 0.93388 0.93190 0.90266 0.89061 0.89239 0.91059 0.90205 0.91512 0.91608 0.92296 0.91965 0.92137 0.92381 0.94187 0.93029 0.93825 0.80227 0.90892 0.89398 0.89531 0.81027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.82 37.16 0.33 -1.29 16 2 C 0.01 0.06 2.40 -91.78 -0.22 -0.16 16 3 H 0.08 0.91 7.92 -51.92 -0.41 0.50 16 4 C -0.13 -1.31 3.35 -27.88 -0.09 -1.41 16 5 C 0.51 7.30 7.37 -10.98 -0.08 7.22 16 6 O -0.54 -9.64 13.29 5.55 0.07 -9.57 16 7 N -0.59 -8.75 2.70 -164.40 -0.44 -9.19 16 8 C 0.11 1.23 6.08 -3.10 -0.02 1.21 16 9 C -0.13 -1.65 6.17 -26.08 -0.16 -1.81 16 10 C -0.13 -2.25 5.12 -26.86 -0.14 -2.39 16 11 C 0.16 3.15 3.53 -66.38 -0.23 2.92 16 12 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 13 C 0.13 2.43 3.10 -67.30 -0.21 2.23 16 14 H 0.10 2.14 6.96 -51.93 -0.36 1.77 16 15 C -0.15 -2.91 6.10 -25.16 -0.15 -3.06 16 16 C 0.18 4.36 5.24 -2.88 -0.02 4.35 16 17 N -0.60 -14.93 2.95 -162.23 -0.48 -15.41 16 18 C -0.22 -6.17 10.29 -15.06 -0.16 -6.32 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -27.01 10.33 55.49 0.57 -26.44 16 22 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C -0.22 -2.13 4.80 -105.06 -0.50 -2.63 16 27 C 0.06 0.54 11.54 -17.37 -0.20 0.34 16 28 N -0.30 -3.29 12.58 30.63 0.39 -2.90 16 29 N -0.38 -3.33 4.01 -68.16 -0.27 -3.60 16 30 C 0.10 0.47 11.47 59.85 0.69 1.15 16 31 C 0.05 0.46 11.38 -17.22 -0.20 0.26 16 32 H 0.05 0.47 8.02 -51.93 -0.42 0.05 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 35 H 0.09 0.79 7.62 -51.93 -0.40 0.39 16 36 H 0.09 0.81 7.92 -51.93 -0.41 0.40 16 37 H 0.07 0.82 7.51 -51.93 -0.39 0.43 16 38 H 0.08 0.69 5.82 -51.93 -0.30 0.39 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 1.14 7.20 -51.93 -0.37 0.77 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.06 1.03 6.81 -51.93 -0.35 0.67 16 45 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 46 H 0.05 1.40 7.29 -51.93 -0.38 1.03 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 49 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 51 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 52 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -33.77 401.14 -9.30 -43.07 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.69 Total: 0.62 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.46 Total: 0.26 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.24 Total: -57.55 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.77 -9.30 -43.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049614125.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.248 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds