Wall clock time and date at job start Wed Apr 1 2020 05:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47110 * 2 1 4 4 C 1.52997 * 109.47085 * 239.99940 * 2 1 3 5 5 C 1.50706 * 109.47238 * 64.99687 * 4 2 1 6 6 O 1.21279 * 119.99507 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00020 * 180.02562 * 5 4 2 8 8 C 1.47846 * 122.22543 * 0.02562 * 7 5 4 9 9 C 1.52722 * 111.05351 * 127.51378 * 8 7 5 10 10 C 1.53873 * 111.52604 * 48.53528 * 9 8 7 11 11 C 1.51078 * 107.34181 * 303.07364 * 10 9 8 12 12 H 1.08998 * 108.73155 * 308.52194 * 11 10 9 13 13 C 1.45727 * 122.22483 * 179.71828 * 7 5 4 14 14 H 1.08999 * 111.07218 * 119.47428 * 13 7 5 15 15 C 1.53129 * 115.92167 * 350.49472 * 13 7 5 16 16 C 1.55473 * 101.18837 * 206.28777 * 15 13 7 17 17 N 1.45027 * 119.19486 * 183.26124 * 11 10 9 18 18 C 1.36938 * 126.55869 * 28.80562 * 17 11 10 19 19 H 1.07998 * 120.00186 * 0.02562 * 18 17 11 20 20 C 1.38810 * 119.99878 * 180.02562 * 18 17 11 21 21 N 1.31622 * 120.00036 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00293 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46711 * 60.00079 * 22 20 18 24 24 H 1.48500 * 109.46997 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46798 * 299.99967 * 22 20 18 26 26 C 1.50701 * 109.47421 * 119.99915 * 2 1 3 27 27 C 1.39870 * 126.03958 * 59.68644 * 26 2 1 28 28 N 1.30831 * 108.20207 * 179.81785 * 27 26 2 29 29 N 1.40085 * 108.20579 * 0.44587 * 28 27 26 30 30 C 1.46503 * 126.03768 * 179.73992 * 29 28 27 31 31 C 1.34944 * 107.92509 * 359.71483 * 29 28 27 32 32 H 1.08993 * 109.46967 * 59.99924 * 1 2 3 33 33 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46776 * 299.99721 * 1 2 3 35 35 H 1.09001 * 109.46832 * 305.00000 * 4 2 1 36 36 H 1.09000 * 109.47611 * 185.00297 * 4 2 1 37 37 H 1.09007 * 109.16101 * 247.91312 * 8 7 5 38 38 H 1.08997 * 109.16650 * 7.10841 * 8 7 5 39 39 H 1.09005 * 109.06990 * 169.06240 * 9 8 7 40 40 H 1.09002 * 109.06876 * 288.07555 * 9 8 7 41 41 H 1.09006 * 109.87976 * 62.53021 * 10 9 8 42 42 H 1.08999 * 109.88200 * 183.60906 * 10 9 8 43 43 H 1.08993 * 111.00719 * 88.44567 * 15 13 7 44 44 H 1.09005 * 111.45750 * 324.32180 * 15 13 7 45 45 H 1.09000 * 109.95922 * 263.46652 * 16 15 13 46 46 H 1.08997 * 109.96225 * 142.22395 * 16 15 13 47 47 H 0.97000 * 120.00459 * 179.97438 * 21 20 18 48 48 H 1.08002 * 125.89621 * 0.02562 * 27 26 2 49 49 H 1.09004 * 109.46780 * 269.97179 * 30 29 28 50 50 H 1.09003 * 109.46735 * 29.97015 * 30 29 28 51 51 H 1.08990 * 109.47426 * 149.97174 * 30 29 28 52 52 H 1.07997 * 126.12671 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0116 1.0873 -2.3632 7 7 1.9844 -0.3920 -3.7002 8 6 2.7506 -1.6413 -3.8953 9 6 2.0461 -2.5682 -4.8837 10 6 1.6275 -1.8187 -6.1607 11 6 0.7470 -0.6661 -5.7382 12 1 -0.0418 -1.0475 -5.0898 13 6 1.6192 0.3182 -4.9192 14 1 2.5054 0.6194 -5.4777 15 6 0.6343 1.4782 -4.7485 16 6 -0.0300 1.5192 -6.1536 17 7 0.1465 0.1753 -6.7554 18 6 -0.1941 -0.1999 -8.0276 19 1 -0.0192 -1.2136 -8.3567 20 6 -0.7642 0.7225 -8.8941 21 7 -0.9770 1.9580 -8.4931 22 14 -1.2296 0.2106 -10.6293 23 1 -2.2254 -0.8894 -10.5705 24 1 -1.8149 1.3711 -11.3475 25 1 -0.0178 -0.2566 -11.3493 26 6 2.0325 -0.7104 1.2305 27 6 1.7686 -2.0390 1.5790 28 7 2.3777 -2.2939 2.7085 29 7 3.0410 -1.1308 3.1202 30 6 3.8409 -0.9801 4.3383 31 6 2.8136 -0.1738 2.1963 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8901 35 1 1.6054 -1.7198 -1.2951 36 1 3.1263 -0.7996 -1.2056 37 1 3.7416 -1.3971 -4.2779 38 1 2.8534 -2.1513 -2.9375 39 1 2.7209 -3.3809 -5.1528 40 1 1.1578 -2.9855 -4.4095 41 1 2.5112 -1.4409 -6.6752 42 1 1.0724 -2.4878 -6.8181 43 1 1.1600 2.4095 -4.5380 44 1 -0.1028 1.2648 -3.9743 45 1 0.4579 2.2710 -6.7740 46 1 -1.0913 1.7477 -6.0569 47 1 -1.3750 2.6028 -9.0987 48 1 1.1687 -2.7353 1.0118 49 1 3.2003 -0.6458 5.1545 50 1 4.2907 -1.9383 4.5985 51 1 4.6266 -0.2441 4.1683 52 1 3.1883 0.8387 2.2229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049614127.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:12 Heat of formation + Delta-G solvation = 77.467613 kcal Electronic energy + Delta-G solvation = -31444.155932 eV Core-core repulsion = 27446.387062 eV Total energy + Delta-G solvation = -3997.768870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.48009 -40.31147 -38.01331 -35.38135 -35.29372 -33.00275 -32.54009 -32.14611 -29.96780 -29.09124 -28.24338 -27.52577 -26.74778 -24.46568 -24.31756 -22.69094 -21.44810 -21.33250 -20.81436 -19.79733 -19.51023 -18.53328 -17.10037 -16.63814 -16.06510 -15.70686 -15.63646 -15.29644 -14.84080 -14.60400 -14.51868 -14.11746 -13.94013 -13.82761 -13.58110 -13.25719 -13.18152 -13.09367 -12.74637 -12.68198 -12.41161 -12.36189 -12.09602 -11.76569 -11.53060 -11.50835 -11.20931 -11.13676 -10.95668 -10.80176 -10.62196 -10.54226 -10.44917 -10.32084 -10.07558 -9.93105 -9.78210 -9.64901 -9.57209 -8.86622 -8.56768 -8.51428 -8.13121 -6.78192 -5.65720 -2.99962 1.65811 2.27464 2.59187 2.94316 3.28169 3.43064 3.47304 3.48747 4.21272 4.53004 4.58550 4.64260 4.75808 4.80686 4.86756 4.98933 5.02009 5.08758 5.16046 5.24283 5.35091 5.42315 5.48808 5.49808 5.51045 5.61208 5.66276 5.69288 5.73720 5.83121 5.91823 5.93018 6.05100 6.12852 6.14946 6.31670 6.32536 6.34715 6.41176 6.44705 6.55794 6.63499 6.75668 6.77901 6.85807 6.95537 7.25219 7.47044 7.62621 7.70803 7.81903 7.89619 8.29932 8.55233 9.23821 9.87712 10.56255 11.46066 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026416 B = 0.002280 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.717252 B =12275.704803 C =12829.046837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.006 3.994 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.515 3.485 6 O -0.530 6.530 7 N -0.602 5.602 8 C 0.111 3.889 9 C -0.130 4.130 10 C -0.115 4.115 11 C 0.158 3.842 12 H 0.017 0.983 13 C 0.118 3.882 14 H 0.077 0.923 15 C -0.127 4.127 16 C 0.171 3.829 17 N -0.593 5.593 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.224 4.224 27 C 0.056 3.944 28 N -0.301 5.301 29 N -0.381 5.381 30 C 0.103 3.897 31 C 0.054 3.946 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.038 0.962 47 H 0.252 0.748 48 H 0.181 0.819 49 H 0.072 0.928 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.633 -6.959 22.343 26.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 H 0.100 0.900 4 C -0.171 4.171 5 C 0.304 3.696 6 O -0.407 6.407 7 N -0.336 5.336 8 C -0.012 4.012 9 C -0.168 4.168 10 C -0.154 4.154 11 C 0.049 3.951 12 H 0.035 0.965 13 C 0.013 3.987 14 H 0.094 0.906 15 C -0.166 4.166 16 C 0.046 3.954 17 N -0.318 5.318 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.236 4.236 27 C -0.131 4.131 28 N -0.122 5.122 29 N -0.163 5.163 30 C -0.039 4.039 31 C -0.091 4.091 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.198 0.802 49 H 0.091 0.909 50 H 0.106 0.894 51 H 0.104 0.896 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.522 -7.144 23.267 26.929 hybrid contribution -0.280 0.241 -1.589 1.631 sum 11.242 -6.903 21.679 25.377 Atomic orbital electron populations 1.21929 0.94040 1.01469 1.02996 1.19129 0.96092 0.98096 0.88065 0.90028 1.21763 1.02405 1.00209 0.92690 1.20519 0.79386 0.85772 0.83943 1.90666 1.39530 1.24667 1.85870 1.48077 1.55403 1.24096 1.05974 1.21683 0.94716 0.85004 0.99815 1.21901 1.00667 0.97831 0.96434 1.21422 0.99965 0.97958 0.96054 1.20663 0.92628 0.90963 0.90878 0.96541 1.22260 0.97520 0.95135 0.83742 0.90557 1.22886 0.98045 0.96020 0.99613 1.21747 0.98328 0.87215 0.88104 1.44070 1.70661 1.07188 1.09848 1.18934 1.34233 0.95593 0.86631 0.90475 1.24805 1.01393 0.95849 0.98396 1.69941 1.48946 1.02870 1.34949 0.86235 0.78196 0.77137 0.84388 1.21240 1.21652 1.21237 1.20143 1.07527 0.95330 1.00554 1.23752 0.99073 0.96251 0.93992 1.77343 1.13504 1.06025 1.15329 1.48431 1.40469 1.08361 1.19078 1.21822 0.94360 1.03977 0.83699 1.22356 1.00463 0.95626 0.90687 0.90131 0.93437 0.93225 0.89266 0.89454 0.91740 0.90340 0.91027 0.91829 0.91845 0.91562 0.92197 0.89892 0.92661 0.94397 0.93717 0.80235 0.90899 0.89419 0.89556 0.81043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.82 37.16 0.33 -1.38 16 2 C 0.01 0.07 2.40 -91.77 -0.22 -0.15 16 3 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 4 C -0.13 -1.37 3.45 -27.88 -0.10 -1.46 16 5 C 0.52 7.55 7.40 -10.98 -0.08 7.46 16 6 O -0.53 -9.41 10.77 5.56 0.06 -9.35 16 7 N -0.60 -9.04 2.92 -164.52 -0.48 -9.52 16 8 C 0.11 1.26 6.32 -3.45 -0.02 1.24 16 9 C -0.13 -1.60 5.93 -26.42 -0.16 -1.75 16 10 C -0.12 -1.96 5.44 -27.24 -0.15 -2.10 16 11 C 0.16 3.28 2.58 -68.67 -0.18 3.10 16 12 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 13 C 0.12 2.22 3.27 -67.26 -0.22 2.00 16 14 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 15 C -0.13 -2.68 4.95 -25.35 -0.13 -2.81 16 16 C 0.17 4.33 5.46 -1.73 -0.01 4.32 16 17 N -0.59 -15.23 3.34 -163.70 -0.55 -15.77 16 18 C -0.23 -6.24 9.94 -15.06 -0.15 -6.39 16 19 H 0.08 2.04 7.33 -52.49 -0.38 1.66 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -27.38 10.46 55.49 0.58 -26.80 16 22 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C -0.22 -2.18 4.80 -105.05 -0.50 -2.69 16 27 C 0.06 0.56 11.54 -17.37 -0.20 0.36 16 28 N -0.30 -3.37 12.58 30.62 0.39 -2.98 16 29 N -0.38 -3.40 4.01 -68.16 -0.27 -3.67 16 30 C 0.10 0.48 11.47 59.85 0.69 1.17 16 31 C 0.05 0.47 11.38 -17.23 -0.20 0.27 16 32 H 0.08 1.15 5.95 -51.93 -0.31 0.84 16 33 H 0.05 0.50 8.02 -51.93 -0.42 0.09 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.82 7.75 -51.93 -0.40 0.42 16 36 H 0.09 0.80 8.02 -51.93 -0.42 0.38 16 37 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.08 0.68 6.18 -51.93 -0.32 0.36 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 42 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.82 6.24 -51.93 -0.32 1.49 16 45 H 0.06 1.53 7.18 -51.93 -0.37 1.16 16 46 H 0.04 1.06 7.81 -51.93 -0.41 0.65 16 47 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 49 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 52 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -34.24 399.61 -9.46 -43.69 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -8.79 Total: 0.36 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.39 Total: 0.85 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.34 Total: -58.75 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.06 Total: -9.35 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.24 -9.46 -43.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049614127.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.162 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds