Wall clock time and date at job start Wed Apr 1 2020 05:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47110 * 2 1 4 4 C 1.52997 * 109.47085 * 239.99940 * 2 1 3 5 5 C 1.50706 * 109.47238 * 64.99687 * 4 2 1 6 6 O 1.21279 * 119.99507 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00020 * 180.02562 * 5 4 2 8 8 C 1.47846 * 122.22543 * 0.02562 * 7 5 4 9 9 C 1.52722 * 111.05351 * 127.51378 * 8 7 5 10 10 C 1.53873 * 111.52604 * 48.53528 * 9 8 7 11 11 C 1.51078 * 107.34181 * 303.07364 * 10 9 8 12 12 H 1.08998 * 108.73155 * 308.52194 * 11 10 9 13 13 C 1.45727 * 122.22483 * 179.71828 * 7 5 4 14 14 H 1.08999 * 111.07218 * 119.47428 * 13 7 5 15 15 C 1.53129 * 115.92167 * 350.49472 * 13 7 5 16 16 C 1.55473 * 101.18837 * 206.28777 * 15 13 7 17 17 N 1.45027 * 119.19486 * 183.26124 * 11 10 9 18 18 C 1.36938 * 126.55869 * 28.80562 * 17 11 10 19 19 H 1.07998 * 120.00186 * 0.02562 * 18 17 11 20 20 C 1.38810 * 119.99878 * 180.02562 * 18 17 11 21 21 N 1.31622 * 120.00036 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00293 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46711 * 60.00079 * 22 20 18 24 24 H 1.48500 * 109.46997 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46798 * 299.99967 * 22 20 18 26 26 C 1.50701 * 109.47421 * 119.99915 * 2 1 3 27 27 C 1.39870 * 126.03958 * 59.68644 * 26 2 1 28 28 N 1.30831 * 108.20207 * 179.81785 * 27 26 2 29 29 N 1.40085 * 108.20579 * 0.44587 * 28 27 26 30 30 C 1.46503 * 126.03768 * 179.73992 * 29 28 27 31 31 C 1.34944 * 107.92509 * 359.71483 * 29 28 27 32 32 H 1.08993 * 109.46967 * 59.99924 * 1 2 3 33 33 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46776 * 299.99721 * 1 2 3 35 35 H 1.09001 * 109.46832 * 305.00000 * 4 2 1 36 36 H 1.09000 * 109.47611 * 185.00297 * 4 2 1 37 37 H 1.09007 * 109.16101 * 247.91312 * 8 7 5 38 38 H 1.08997 * 109.16650 * 7.10841 * 8 7 5 39 39 H 1.09005 * 109.06990 * 169.06240 * 9 8 7 40 40 H 1.09002 * 109.06876 * 288.07555 * 9 8 7 41 41 H 1.09006 * 109.87976 * 62.53021 * 10 9 8 42 42 H 1.08999 * 109.88200 * 183.60906 * 10 9 8 43 43 H 1.08993 * 111.00719 * 88.44567 * 15 13 7 44 44 H 1.09005 * 111.45750 * 324.32180 * 15 13 7 45 45 H 1.09000 * 109.95922 * 263.46652 * 16 15 13 46 46 H 1.08997 * 109.96225 * 142.22395 * 16 15 13 47 47 H 0.97000 * 120.00459 * 179.97438 * 21 20 18 48 48 H 1.08002 * 125.89621 * 0.02562 * 27 26 2 49 49 H 1.09004 * 109.46780 * 269.97179 * 30 29 28 50 50 H 1.09003 * 109.46735 * 29.97015 * 30 29 28 51 51 H 1.08990 * 109.47426 * 149.97174 * 30 29 28 52 52 H 1.07997 * 126.12671 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0116 1.0873 -2.3632 7 7 1.9844 -0.3920 -3.7002 8 6 2.7506 -1.6413 -3.8953 9 6 2.0461 -2.5682 -4.8837 10 6 1.6275 -1.8187 -6.1607 11 6 0.7470 -0.6661 -5.7382 12 1 -0.0418 -1.0475 -5.0898 13 6 1.6192 0.3182 -4.9192 14 1 2.5054 0.6194 -5.4777 15 6 0.6343 1.4782 -4.7485 16 6 -0.0300 1.5192 -6.1536 17 7 0.1465 0.1753 -6.7554 18 6 -0.1941 -0.1999 -8.0276 19 1 -0.0192 -1.2136 -8.3567 20 6 -0.7642 0.7225 -8.8941 21 7 -0.9770 1.9580 -8.4931 22 14 -1.2296 0.2106 -10.6293 23 1 -2.2254 -0.8894 -10.5705 24 1 -1.8149 1.3711 -11.3475 25 1 -0.0178 -0.2566 -11.3493 26 6 2.0325 -0.7104 1.2305 27 6 1.7686 -2.0390 1.5790 28 7 2.3777 -2.2939 2.7085 29 7 3.0410 -1.1308 3.1202 30 6 3.8409 -0.9801 4.3383 31 6 2.8136 -0.1738 2.1963 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8901 35 1 1.6054 -1.7198 -1.2951 36 1 3.1263 -0.7996 -1.2056 37 1 3.7416 -1.3971 -4.2779 38 1 2.8534 -2.1513 -2.9375 39 1 2.7209 -3.3809 -5.1528 40 1 1.1578 -2.9855 -4.4095 41 1 2.5112 -1.4409 -6.6752 42 1 1.0724 -2.4878 -6.8181 43 1 1.1600 2.4095 -4.5380 44 1 -0.1028 1.2648 -3.9743 45 1 0.4579 2.2710 -6.7740 46 1 -1.0913 1.7477 -6.0569 47 1 -1.3750 2.6028 -9.0987 48 1 1.1687 -2.7353 1.0118 49 1 3.2003 -0.6458 5.1545 50 1 4.2907 -1.9383 4.5985 51 1 4.6266 -0.2441 4.1683 52 1 3.1883 0.8387 2.2229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049614127.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:10 Heat of formation + Delta-G solvation = 56.570610 kcal Electronic energy + Delta-G solvation = -31445.062094 eV Core-core repulsion = 27446.387062 eV Total energy + Delta-G solvation = -3998.675032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.16442 -41.60332 -39.40650 -36.88306 -36.16619 -34.25052 -33.78001 -33.55242 -31.13968 -30.41017 -29.69447 -28.63750 -27.30195 -26.35300 -25.67698 -23.62000 -22.78650 -22.33646 -21.93452 -21.39290 -20.51187 -19.68098 -18.58072 -17.70888 -17.18784 -17.05090 -16.63286 -16.47847 -16.23532 -15.91424 -15.50440 -15.37885 -15.19357 -15.06702 -14.75943 -14.45792 -14.09661 -13.98832 -13.89017 -13.64744 -13.54433 -13.36129 -13.27870 -13.12607 -13.07647 -12.85111 -12.66496 -12.45120 -12.17546 -12.11844 -12.02797 -11.90976 -11.75371 -11.71986 -11.65290 -11.51078 -11.35604 -11.25674 -10.73232 -10.29586 -10.14232 -9.43465 -9.22865 -8.88551 -7.82418 -5.19338 1.02530 1.45572 1.49592 1.55676 1.75897 1.82485 1.87838 2.14255 2.51898 3.35588 3.40457 3.61565 3.76960 3.95269 4.02446 4.06199 4.11101 4.15111 4.20381 4.29981 4.31871 4.39559 4.41179 4.48390 4.53075 4.61333 4.65783 4.71602 4.73827 4.74261 4.80297 4.83765 4.89672 4.92101 4.97574 5.08719 5.12220 5.15406 5.20999 5.28547 5.32946 5.48097 5.50243 5.50623 5.56410 5.62658 5.68102 5.77677 5.80300 6.20193 6.20764 6.68170 6.81465 7.07064 7.40065 7.77651 8.47830 9.28973 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026416 B = 0.002280 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.717252 B =12275.704803 C =12829.046837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.016 3.984 3 H 0.071 0.929 4 C -0.117 4.117 5 C 0.509 3.491 6 O -0.568 6.568 7 N -0.605 5.605 8 C 0.106 3.894 9 C -0.120 4.120 10 C -0.112 4.112 11 C 0.151 3.849 12 H -0.001 1.001 13 C 0.134 3.866 14 H 0.074 0.926 15 C -0.108 4.108 16 C 0.180 3.820 17 N -0.613 5.613 18 C -0.232 4.232 19 H 0.088 0.912 20 C -0.072 4.072 21 N -0.955 5.955 22 Si 0.980 3.020 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.273 1.273 26 C -0.237 4.237 27 C 0.050 3.950 28 N -0.336 5.336 29 N -0.383 5.383 30 C 0.094 3.906 31 C 0.059 3.941 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.024 0.976 46 H -0.003 1.003 47 H 0.246 0.754 48 H 0.193 0.807 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.113 0.887 52 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.221 -9.461 24.003 29.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.004 4.004 3 H 0.090 0.910 4 C -0.157 4.157 5 C 0.299 3.701 6 O -0.448 6.448 7 N -0.337 5.337 8 C -0.016 4.016 9 C -0.159 4.159 10 C -0.150 4.150 11 C 0.043 3.957 12 H 0.017 0.983 13 C 0.029 3.971 14 H 0.092 0.908 15 C -0.147 4.147 16 C 0.055 3.945 17 N -0.338 5.338 18 C -0.361 4.361 19 H 0.106 0.894 20 C -0.265 4.265 21 N -0.604 5.604 22 Si 0.808 3.192 23 H -0.204 1.204 24 H -0.224 1.224 25 H -0.198 1.198 26 C -0.249 4.249 27 C -0.135 4.135 28 N -0.158 5.158 29 N -0.165 5.165 30 C -0.046 4.046 31 C -0.087 4.087 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.042 0.958 46 H 0.015 0.985 47 H 0.055 0.945 48 H 0.210 0.790 49 H 0.100 0.900 50 H 0.108 0.892 51 H 0.131 0.869 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 14.152 -9.716 24.972 30.303 hybrid contribution -1.107 1.044 -2.001 2.514 sum 13.045 -8.672 22.971 27.804 Atomic orbital electron populations 1.21860 0.95335 1.01527 1.01347 1.18952 0.94896 0.97797 0.88759 0.91019 1.21760 1.03960 1.00117 0.89866 1.21348 0.78367 0.85580 0.84767 1.90660 1.41108 1.26618 1.86398 1.48181 1.55797 1.25118 1.04654 1.22025 0.94513 0.83254 1.01761 1.21885 1.01688 0.98298 0.94008 1.21409 0.98689 0.96394 0.98545 1.20861 0.92829 0.92335 0.89634 0.98312 1.21789 0.96286 0.93517 0.85540 0.90833 1.22605 0.98301 0.97565 0.96182 1.21459 0.95901 0.87015 0.90146 1.44345 1.71204 1.07957 1.10259 1.19368 1.33232 0.95997 0.87489 0.89422 1.25717 1.02133 0.95985 1.02622 1.70183 1.50249 1.03969 1.36005 0.85135 0.78189 0.76494 0.79422 1.20382 1.22403 1.19848 1.20020 1.08764 0.95365 1.00724 1.24009 0.98939 0.96655 0.93883 1.77293 1.14766 1.07629 1.16119 1.48764 1.40112 1.07762 1.19883 1.22148 0.94846 1.05011 0.82632 1.22805 0.99453 0.96509 0.89982 0.93290 0.92503 0.93271 0.87176 0.86928 0.90003 0.86361 0.87330 0.91781 0.91996 0.92763 0.91966 0.90782 0.95812 0.98488 0.94528 0.78991 0.89986 0.89240 0.86892 0.78461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.82 71.98 0.63 -2.60 16 2 C 0.02 0.31 2.40 -11.54 -0.03 0.28 16 3 H 0.07 1.51 7.92 -2.39 -0.02 1.49 16 4 C -0.12 -2.06 3.45 29.85 0.10 -1.96 16 5 C 0.51 14.04 7.40 87.66 0.65 14.68 16 6 O -0.57 -20.27 10.77 -3.02 -0.03 -20.31 16 7 N -0.60 -16.87 2.92 -792.80 -2.32 -19.19 16 8 C 0.11 1.94 6.32 86.03 0.54 2.48 16 9 C -0.12 -2.50 5.93 30.80 0.18 -2.32 16 10 C -0.11 -3.62 5.44 30.26 0.16 -3.46 16 11 C 0.15 6.33 2.58 45.30 0.12 6.45 16 12 H 0.00 -0.03 8.05 -2.39 -0.02 -0.04 16 13 C 0.13 5.05 3.27 45.84 0.15 5.20 16 14 H 0.07 2.82 8.14 -2.39 -0.02 2.81 16 15 C -0.11 -4.77 4.95 31.49 0.16 -4.61 16 16 C 0.18 9.76 5.46 86.88 0.47 10.23 16 17 N -0.61 -32.71 3.34 -671.82 -2.24 -34.95 16 18 C -0.23 -13.17 9.94 84.03 0.84 -12.33 16 19 H 0.09 4.66 7.33 -2.91 -0.02 4.64 16 20 C -0.07 -4.21 5.49 84.86 0.47 -3.75 16 21 N -0.95 -59.78 10.46 21.65 0.23 -59.56 16 22 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 C -0.24 -4.00 4.80 -20.14 -0.10 -4.10 16 27 C 0.05 0.90 11.54 85.24 0.98 1.88 16 28 N -0.34 -6.83 12.58 -57.03 -0.72 -7.54 16 29 N -0.38 -5.84 4.01 -369.57 -1.48 -7.32 16 30 C 0.09 0.62 11.47 127.77 1.47 2.09 16 31 C 0.06 0.84 11.38 83.54 0.95 1.79 16 32 H 0.05 1.43 5.95 -2.39 -0.01 1.41 16 33 H 0.06 1.14 8.02 -2.39 -0.02 1.12 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.11 1.54 7.75 -2.39 -0.02 1.52 16 36 H 0.11 1.50 8.02 -2.39 -0.02 1.48 16 37 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.12 1.32 6.18 -2.39 -0.01 1.31 16 39 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 2.02 8.12 -2.38 -0.02 2.00 16 42 H 0.05 1.87 7.73 -2.39 -0.02 1.85 16 43 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.07 3.42 6.24 -2.38 -0.01 3.40 16 45 H 0.02 1.41 7.18 -2.39 -0.02 1.39 16 46 H 0.00 -0.19 7.81 -2.39 -0.02 -0.21 16 47 H 0.25 15.00 8.31 -92.71 -0.77 14.22 16 48 H 0.19 2.62 8.06 -2.91 -0.02 2.59 16 49 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 50 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 52 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -80.18 399.61 4.11 -76.07 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.89 Total: 14.16 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 7.75 Total: 9.97 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -6.54 Total: -128.57 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.03 Total: -20.31 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -80.18 4.11 -76.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049614127.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.641 kcal (2) G-P(sol) polarization free energy of solvation -80.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds