Wall clock time and date at job start Wed Apr 1 2020 04:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46941 * 2 1 4 4 C 1.52999 * 109.47377 * 239.99808 * 2 1 3 5 5 C 1.50697 * 109.47203 * 65.00029 * 4 2 1 6 6 C 1.39865 * 126.03946 * 90.02296 * 5 4 2 7 7 N 1.30839 * 108.20441 * 179.97438 * 6 5 4 8 8 N 1.40086 * 108.20317 * 359.97438 * 7 6 5 9 9 C 1.46499 * 126.03974 * 179.97438 * 8 7 6 10 10 C 1.34951 * 107.92580 * 359.76370 * 8 7 6 11 11 C 1.50709 * 109.47033 * 119.99687 * 2 1 3 12 12 O 1.21278 * 119.99548 * 102.40373 * 11 2 1 13 13 N 1.34778 * 119.99729 * 282.40759 * 11 2 1 14 14 C 1.48149 * 122.41451 * 353.99647 * 13 11 2 15 15 C 1.52706 * 111.65590 * 231.98660 * 14 13 11 16 16 C 1.53873 * 111.52588 * 311.89484 * 15 14 13 17 17 C 1.51077 * 107.34118 * 56.92751 * 16 15 14 18 18 H 1.08995 * 108.31391 * 51.24781 * 17 16 15 19 19 C 1.45724 * 122.22188 * 174.84814 * 13 11 2 20 20 H 1.09000 * 111.06351 * 241.35712 * 19 13 11 21 21 C 1.53425 * 116.38323 * 9.85807 * 19 13 11 22 22 C 1.55482 * 101.70489 * 153.53483 * 21 19 13 23 23 N 1.45029 * 119.18635 * 176.12284 * 17 16 15 24 24 C 1.36942 * 126.56228 * 331.24134 * 23 17 16 25 25 H 1.07997 * 119.99782 * 0.02562 * 24 23 17 26 26 C 1.38814 * 119.99967 * 179.97438 * 24 23 17 27 27 N 1.31616 * 120.00191 * 0.02562 * 26 24 23 28 28 Si 1.86797 * 119.99630 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.47402 * 90.00232 * 28 26 24 30 30 H 1.48498 * 109.47129 * 210.00394 * 28 26 24 31 31 H 1.48502 * 109.47481 * 330.00045 * 28 26 24 32 32 H 1.09002 * 109.47619 * 293.10374 * 1 2 3 33 33 H 1.09002 * 109.47420 * 53.11024 * 1 2 3 34 34 H 1.09004 * 109.47456 * 173.10826 * 1 2 3 35 35 H 1.08998 * 109.46813 * 184.99894 * 4 2 1 36 36 H 1.08998 * 109.47030 * 305.00037 * 4 2 1 37 37 H 1.08002 * 125.90123 * 359.95372 * 6 5 4 38 38 H 1.08999 * 109.46812 * 90.02386 * 9 8 7 39 39 H 1.08997 * 109.47478 * 210.02985 * 9 8 7 40 40 H 1.09008 * 109.46931 * 330.02910 * 9 8 7 41 41 H 1.08002 * 126.12561 * 180.23798 * 10 8 7 42 42 H 1.09004 * 108.51634 * 111.62224 * 14 13 11 43 43 H 1.08999 * 109.15780 * 352.76919 * 14 13 11 44 44 H 1.09007 * 109.07291 * 191.37271 * 15 14 13 45 45 H 1.09002 * 109.07457 * 72.42067 * 15 14 13 46 46 H 1.09001 * 109.87992 * 297.46600 * 16 15 14 47 47 H 1.09002 * 109.94456 * 176.42491 * 16 15 14 48 48 H 1.08995 * 110.98612 * 271.64816 * 21 19 13 49 49 H 1.08999 * 110.98681 * 35.42494 * 21 19 13 50 50 H 1.08996 * 109.95883 * 96.80521 * 22 21 19 51 51 H 1.09001 * 109.95819 * 218.03956 * 22 21 19 52 52 H 0.96993 * 119.99817 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 6 2.3903 1.0664 -3.0901 7 7 1.7186 1.5021 -4.1249 8 7 0.5194 0.7821 -4.2030 9 6 -0.5254 0.9550 -5.2153 10 6 0.4987 -0.1021 -3.1837 11 6 2.0323 -0.7104 1.2306 12 8 2.4471 -1.8470 1.1476 13 7 2.0204 -0.0825 2.4231 14 6 1.6489 1.3445 2.5656 15 6 2.7072 2.1279 3.3390 16 6 3.1167 1.3996 4.6311 17 6 3.6039 0.0246 4.2379 18 1 4.3492 0.1375 3.4506 19 6 2.3904 -0.7576 3.6604 20 1 1.5569 -0.7732 4.3626 21 6 3.0184 -2.1500 3.5158 22 6 3.8738 -2.2462 4.8106 23 7 4.1366 -0.8560 5.2597 24 6 4.7624 -0.4775 6.4175 25 1 4.8980 0.5706 6.6402 26 6 5.2214 -1.4408 7.3053 27 7 5.0557 -2.7180 7.0341 28 14 6.0756 -0.9244 8.8842 29 1 5.0679 -0.7666 9.9635 30 1 7.0620 -1.9631 9.2759 31 1 6.7762 0.3671 8.6685 32 1 -0.3634 0.4032 0.9452 33 1 -0.3634 0.6169 -0.8219 34 1 -0.3634 -1.0203 -0.1233 35 1 3.1263 -0.7994 -1.2054 36 1 1.6054 -1.7198 -1.2951 37 1 3.3561 1.4246 -2.7655 38 1 -0.3250 0.2964 -6.0603 39 1 -1.4947 0.7070 -4.7831 40 1 -0.5336 1.9905 -5.5557 41 1 -0.2900 -0.8080 -2.9691 42 1 0.6996 1.4036 3.0982 43 1 1.5311 1.7841 1.5752 44 1 2.3077 3.1093 3.5949 45 1 3.5870 2.2562 2.7084 46 1 2.2573 1.3123 5.2958 47 1 3.9163 1.9477 5.1295 48 1 2.2513 -2.9241 3.4963 49 1 3.6476 -2.2042 2.6274 50 1 3.3241 -2.7882 5.5802 51 1 4.8148 -2.7536 4.5981 52 1 5.3761 -3.3911 7.6546 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049829271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:23 Heat of formation + Delta-G solvation = 77.113338 kcal Electronic energy + Delta-G solvation = -31535.378665 eV Core-core repulsion = 27537.594432 eV Total energy + Delta-G solvation = -3997.784233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.47740 -40.33078 -37.97463 -35.46256 -35.05491 -33.26007 -32.57213 -32.07102 -30.39221 -28.82389 -28.18987 -27.95965 -25.92000 -24.87886 -24.42278 -22.71336 -21.46250 -21.27567 -20.78911 -20.04737 -19.53477 -18.50618 -17.12184 -16.67151 -16.17559 -15.78185 -15.54084 -15.24821 -14.75632 -14.66261 -14.37350 -14.31629 -14.00023 -13.75343 -13.58269 -13.31296 -13.18357 -13.05379 -12.87977 -12.52751 -12.38470 -12.31606 -12.22882 -12.00541 -11.64063 -11.55211 -11.32291 -11.24230 -11.01610 -10.81212 -10.70863 -10.59025 -10.44182 -10.34341 -10.05787 -9.91619 -9.77930 -9.65006 -9.56861 -8.86632 -8.57101 -8.48164 -8.14624 -6.77920 -5.65917 -2.99956 1.64305 2.26782 2.56651 2.92884 3.26498 3.42577 3.47455 3.49625 4.22059 4.52670 4.54961 4.58273 4.74979 4.79785 4.85522 4.91531 4.96369 5.00827 5.14521 5.27994 5.30905 5.32976 5.38872 5.41667 5.49305 5.59411 5.64842 5.67846 5.73465 5.78212 5.83074 5.92533 5.96575 6.05212 6.11111 6.16406 6.19353 6.32643 6.34730 6.44353 6.45593 6.62659 6.75428 6.77796 6.85162 6.96070 7.26316 7.46271 7.63153 7.71403 7.80991 7.89766 8.29697 8.53857 9.23688 9.87646 10.56402 11.46088 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.002296 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.880088 B =12189.927902 C =12565.839896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.022 4.022 5 C -0.227 4.227 6 C 0.053 3.947 7 N -0.300 5.300 8 N -0.380 5.380 9 C 0.102 3.898 10 C 0.056 3.944 11 C 0.520 3.480 12 O -0.532 6.532 13 N -0.600 5.600 14 C 0.111 3.889 15 C -0.129 4.129 16 C -0.116 4.116 17 C 0.159 3.841 18 H 0.017 0.983 19 C 0.116 3.884 20 H 0.076 0.924 21 C -0.131 4.131 22 C 0.172 3.828 23 N -0.593 5.593 24 C -0.225 4.225 25 H 0.078 0.922 26 C -0.009 4.009 27 N -0.920 5.920 28 Si 0.910 3.090 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.282 1.282 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.182 0.818 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.086 0.914 50 H 0.055 0.945 51 H 0.038 0.962 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 9.054 -21.006 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.108 0.892 4 C -0.061 4.061 5 C -0.238 4.238 6 C -0.133 4.133 7 N -0.122 5.122 8 N -0.163 5.163 9 C -0.039 4.039 10 C -0.090 4.090 11 C 0.308 3.692 12 O -0.409 6.409 13 N -0.333 5.333 14 C -0.012 4.012 15 C -0.168 4.168 16 C -0.155 4.155 17 C 0.050 3.950 18 H 0.034 0.966 19 C 0.012 3.988 20 H 0.094 0.906 21 C -0.170 4.170 22 C 0.047 3.953 23 N -0.317 5.317 24 C -0.353 4.353 25 H 0.096 0.904 26 C -0.205 4.205 27 N -0.567 5.567 28 Si 0.741 3.259 29 H -0.217 1.217 30 H -0.217 1.217 31 H -0.208 1.208 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.199 0.801 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.189 0.811 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.104 0.896 50 H 0.073 0.927 51 H 0.057 0.943 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.803 9.156 -21.978 27.521 hybrid contribution 0.383 -0.204 1.627 1.684 sum -13.420 8.952 -20.351 25.969 Atomic orbital electron populations 1.21730 0.93132 1.02519 1.02138 1.21321 0.97516 1.00717 0.93108 0.89177 1.19691 1.01478 0.97216 0.87684 1.20104 0.96681 1.04450 1.02607 1.23857 1.00131 0.96122 0.93198 1.77355 0.94096 1.19119 1.21609 1.48450 1.16031 1.28692 1.23114 1.21827 0.87813 1.04119 0.90147 1.22349 1.00164 0.96106 0.90342 1.20500 0.78114 0.86711 0.83854 1.90686 1.46290 1.18685 1.85220 1.48070 1.67264 1.10953 1.07030 1.21766 0.97880 0.80773 1.00751 1.21893 0.98884 0.98474 0.97561 1.21436 1.01122 0.97010 0.95897 1.20729 0.92329 0.90216 0.91764 0.96565 1.22354 0.97210 0.95547 0.83734 0.90589 1.23000 0.99689 0.93605 1.00683 1.21755 0.96635 0.85955 0.90906 1.44097 1.66664 1.00900 1.20087 1.18982 1.29537 0.92238 0.94528 0.90411 1.24807 1.01416 0.95366 0.98902 1.69950 1.51327 0.98795 1.36619 0.86152 0.79000 0.77292 0.83505 1.21686 1.21730 1.20761 0.92326 0.91849 0.92113 0.90560 0.90409 0.80067 0.90892 0.89547 0.89396 0.81109 0.91826 0.90250 0.90956 0.91813 0.91872 0.91541 0.92370 0.89584 0.92677 0.94329 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.61 37.15 0.32 -0.89 16 2 C -0.11 -1.12 1.89 -91.77 -0.17 -1.29 16 3 H 0.09 0.87 6.54 -51.93 -0.34 0.53 16 4 C -0.02 -0.23 4.53 -27.89 -0.13 -0.36 16 5 C -0.23 -2.18 4.82 -105.06 -0.51 -2.69 16 6 C 0.05 0.54 11.96 -17.37 -0.21 0.33 16 7 N -0.30 -3.34 12.58 30.62 0.39 -2.96 16 8 N -0.38 -3.31 4.01 -68.16 -0.27 -3.58 16 9 C 0.10 0.46 11.47 59.85 0.69 1.15 16 10 C 0.06 0.46 10.25 -17.22 -0.18 0.28 16 11 C 0.52 7.81 6.89 -10.98 -0.08 7.73 16 12 O -0.53 -9.88 12.86 5.56 0.07 -9.81 16 13 N -0.60 -9.12 2.96 -163.75 -0.48 -9.60 16 14 C 0.11 1.29 5.63 -3.29 -0.02 1.27 16 15 C -0.13 -1.62 5.93 -26.43 -0.16 -1.77 16 16 C -0.12 -1.98 5.45 -27.24 -0.15 -2.13 16 17 C 0.16 3.33 2.60 -68.36 -0.18 3.15 16 18 H 0.02 0.38 8.03 -51.93 -0.42 -0.03 16 19 C 0.12 2.20 3.29 -66.80 -0.22 1.98 16 20 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 21 C -0.13 -2.81 5.07 -25.19 -0.13 -2.94 16 22 C 0.17 4.39 5.47 -1.65 -0.01 4.38 16 23 N -0.59 -15.32 3.35 -163.22 -0.55 -15.86 16 24 C -0.22 -6.24 9.94 -15.06 -0.15 -6.39 16 25 H 0.08 2.07 7.30 -52.49 -0.38 1.68 16 26 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 27 N -0.92 -27.46 10.46 55.49 0.58 -26.88 16 28 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 31 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 32 H 0.06 0.51 7.51 -51.93 -0.39 0.13 16 33 H 0.06 0.48 6.87 -51.93 -0.36 0.13 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.86 8.07 -51.93 -0.42 0.45 16 37 H 0.18 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 41 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.72 5.72 -51.93 -0.30 0.42 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 47 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.09 1.93 6.10 -51.93 -0.32 1.62 16 50 H 0.05 1.53 7.18 -51.93 -0.37 1.16 16 51 H 0.04 1.08 7.81 -51.93 -0.41 0.68 16 52 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -34.68 399.17 -9.37 -44.05 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -8.73 Total: -0.10 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.36 Total: 1.49 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.34 Total: -58.89 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.68 -9.37 -44.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049829271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.164 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds