Wall clock time and date at job start Wed Apr 1 2020 04:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46941 * 2 1 4 4 C 1.52999 * 109.47377 * 239.99808 * 2 1 3 5 5 C 1.50697 * 109.47203 * 65.00029 * 4 2 1 6 6 C 1.39865 * 126.03946 * 90.02296 * 5 4 2 7 7 N 1.30839 * 108.20441 * 179.97438 * 6 5 4 8 8 N 1.40086 * 108.20317 * 359.97438 * 7 6 5 9 9 C 1.46499 * 126.03974 * 179.97438 * 8 7 6 10 10 C 1.34951 * 107.92580 * 359.76370 * 8 7 6 11 11 C 1.50709 * 109.47033 * 119.99687 * 2 1 3 12 12 O 1.21278 * 119.99548 * 102.40373 * 11 2 1 13 13 N 1.34778 * 119.99729 * 282.40759 * 11 2 1 14 14 C 1.48149 * 122.41451 * 353.99647 * 13 11 2 15 15 C 1.52706 * 111.65590 * 231.98660 * 14 13 11 16 16 C 1.53873 * 111.52588 * 311.89484 * 15 14 13 17 17 C 1.51077 * 107.34118 * 56.92751 * 16 15 14 18 18 H 1.08995 * 108.31391 * 51.24781 * 17 16 15 19 19 C 1.45724 * 122.22188 * 174.84814 * 13 11 2 20 20 H 1.09000 * 111.06351 * 241.35712 * 19 13 11 21 21 C 1.53425 * 116.38323 * 9.85807 * 19 13 11 22 22 C 1.55482 * 101.70489 * 153.53483 * 21 19 13 23 23 N 1.45029 * 119.18635 * 176.12284 * 17 16 15 24 24 C 1.36942 * 126.56228 * 331.24134 * 23 17 16 25 25 H 1.07997 * 119.99782 * 0.02562 * 24 23 17 26 26 C 1.38814 * 119.99967 * 179.97438 * 24 23 17 27 27 N 1.31616 * 120.00191 * 0.02562 * 26 24 23 28 28 Si 1.86797 * 119.99630 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.47402 * 90.00232 * 28 26 24 30 30 H 1.48498 * 109.47129 * 210.00394 * 28 26 24 31 31 H 1.48502 * 109.47481 * 330.00045 * 28 26 24 32 32 H 1.09002 * 109.47619 * 293.10374 * 1 2 3 33 33 H 1.09002 * 109.47420 * 53.11024 * 1 2 3 34 34 H 1.09004 * 109.47456 * 173.10826 * 1 2 3 35 35 H 1.08998 * 109.46813 * 184.99894 * 4 2 1 36 36 H 1.08998 * 109.47030 * 305.00037 * 4 2 1 37 37 H 1.08002 * 125.90123 * 359.95372 * 6 5 4 38 38 H 1.08999 * 109.46812 * 90.02386 * 9 8 7 39 39 H 1.08997 * 109.47478 * 210.02985 * 9 8 7 40 40 H 1.09008 * 109.46931 * 330.02910 * 9 8 7 41 41 H 1.08002 * 126.12561 * 180.23798 * 10 8 7 42 42 H 1.09004 * 108.51634 * 111.62224 * 14 13 11 43 43 H 1.08999 * 109.15780 * 352.76919 * 14 13 11 44 44 H 1.09007 * 109.07291 * 191.37271 * 15 14 13 45 45 H 1.09002 * 109.07457 * 72.42067 * 15 14 13 46 46 H 1.09001 * 109.87992 * 297.46600 * 16 15 14 47 47 H 1.09002 * 109.94456 * 176.42491 * 16 15 14 48 48 H 1.08995 * 110.98612 * 271.64816 * 21 19 13 49 49 H 1.08999 * 110.98681 * 35.42494 * 21 19 13 50 50 H 1.08996 * 109.95883 * 96.80521 * 22 21 19 51 51 H 1.09001 * 109.95819 * 218.03956 * 22 21 19 52 52 H 0.96993 * 119.99817 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 6 2.3903 1.0664 -3.0901 7 7 1.7186 1.5021 -4.1249 8 7 0.5194 0.7821 -4.2030 9 6 -0.5254 0.9550 -5.2153 10 6 0.4987 -0.1021 -3.1837 11 6 2.0323 -0.7104 1.2306 12 8 2.4471 -1.8470 1.1476 13 7 2.0204 -0.0825 2.4231 14 6 1.6489 1.3445 2.5656 15 6 2.7072 2.1279 3.3390 16 6 3.1167 1.3996 4.6311 17 6 3.6039 0.0246 4.2379 18 1 4.3492 0.1375 3.4506 19 6 2.3904 -0.7576 3.6604 20 1 1.5569 -0.7732 4.3626 21 6 3.0184 -2.1500 3.5158 22 6 3.8738 -2.2462 4.8106 23 7 4.1366 -0.8560 5.2597 24 6 4.7624 -0.4775 6.4175 25 1 4.8980 0.5706 6.6402 26 6 5.2214 -1.4408 7.3053 27 7 5.0557 -2.7180 7.0341 28 14 6.0756 -0.9244 8.8842 29 1 5.0679 -0.7666 9.9635 30 1 7.0620 -1.9631 9.2759 31 1 6.7762 0.3671 8.6685 32 1 -0.3634 0.4032 0.9452 33 1 -0.3634 0.6169 -0.8219 34 1 -0.3634 -1.0203 -0.1233 35 1 3.1263 -0.7994 -1.2054 36 1 1.6054 -1.7198 -1.2951 37 1 3.3561 1.4246 -2.7655 38 1 -0.3250 0.2964 -6.0603 39 1 -1.4947 0.7070 -4.7831 40 1 -0.5336 1.9905 -5.5557 41 1 -0.2900 -0.8080 -2.9691 42 1 0.6996 1.4036 3.0982 43 1 1.5311 1.7841 1.5752 44 1 2.3077 3.1093 3.5949 45 1 3.5870 2.2562 2.7084 46 1 2.2573 1.3123 5.2958 47 1 3.9163 1.9477 5.1295 48 1 2.2513 -2.9241 3.4963 49 1 3.6476 -2.2042 2.6274 50 1 3.3241 -2.7882 5.5802 51 1 4.8148 -2.7536 4.5981 52 1 5.3761 -3.3911 7.6546 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049829271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:22 Heat of formation + Delta-G solvation = 55.549831 kcal Electronic energy + Delta-G solvation = -31536.313729 eV Core-core repulsion = 27537.594432 eV Total energy + Delta-G solvation = -3998.719296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.16933 -41.62232 -39.41925 -36.88646 -36.06619 -34.24393 -33.92889 -33.64079 -31.33741 -30.52633 -29.64573 -28.57583 -26.73563 -26.36739 -26.01468 -23.85075 -22.81274 -22.24813 -21.89681 -21.34435 -20.83964 -19.65798 -18.59102 -17.74289 -17.23609 -17.10530 -16.73523 -16.34608 -16.27281 -15.86062 -15.57082 -15.37726 -15.29449 -15.01890 -14.77371 -14.32389 -14.18178 -13.96127 -13.95706 -13.69685 -13.48625 -13.39204 -13.16004 -13.13080 -13.05308 -12.90049 -12.74227 -12.64261 -12.21136 -12.14596 -12.04206 -12.03317 -11.83487 -11.71523 -11.66630 -11.53369 -11.36697 -11.34538 -10.75261 -10.29848 -10.13717 -9.48615 -9.21893 -8.89563 -7.83401 -5.20280 1.01211 1.45405 1.48145 1.56495 1.73572 1.77246 1.84364 2.11051 2.51060 3.34871 3.36812 3.58332 3.75147 3.91101 4.00570 4.04304 4.06303 4.12080 4.13802 4.21290 4.28456 4.37463 4.40415 4.49044 4.53710 4.59585 4.61404 4.63474 4.70403 4.71994 4.75323 4.86325 4.93291 4.96139 4.99821 5.05184 5.07758 5.14150 5.18854 5.28388 5.31055 5.32897 5.44907 5.46794 5.49691 5.61401 5.66114 5.75904 5.76607 6.19107 6.21333 6.63502 6.80003 7.06073 7.34100 7.76430 8.46922 9.28420 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.002296 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.880088 B =12189.927902 C =12565.839896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.091 4.091 3 H 0.108 0.892 4 C -0.013 4.013 5 C -0.241 4.241 6 C 0.043 3.957 7 N -0.335 5.335 8 N -0.381 5.381 9 C 0.093 3.907 10 C 0.067 3.933 11 C 0.514 3.486 12 O -0.575 6.575 13 N -0.601 5.601 14 C 0.106 3.894 15 C -0.121 4.121 16 C -0.112 4.112 17 C 0.152 3.848 18 H -0.003 1.003 19 C 0.133 3.867 20 H 0.077 0.923 21 C -0.114 4.114 22 C 0.182 3.818 23 N -0.613 5.613 24 C -0.231 4.231 25 H 0.089 0.911 26 C -0.072 4.072 27 N -0.955 5.955 28 Si 0.980 3.020 29 H -0.283 1.283 30 H -0.298 1.298 31 H -0.267 1.267 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.190 0.810 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.201 0.799 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.025 0.975 51 H -0.003 1.003 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.555 11.995 -22.368 30.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.112 4.112 3 H 0.126 0.874 4 C -0.052 4.052 5 C -0.253 4.253 6 C -0.142 4.142 7 N -0.157 5.157 8 N -0.163 5.163 9 C -0.047 4.047 10 C -0.080 4.080 11 C 0.304 3.696 12 O -0.455 6.455 13 N -0.334 5.334 14 C -0.015 4.015 15 C -0.159 4.159 16 C -0.150 4.150 17 C 0.044 3.956 18 H 0.014 0.986 19 C 0.027 3.973 20 H 0.095 0.905 21 C -0.152 4.152 22 C 0.056 3.944 23 N -0.337 5.337 24 C -0.360 4.360 25 H 0.106 0.894 26 C -0.265 4.265 27 N -0.604 5.604 28 Si 0.808 3.192 29 H -0.210 1.210 30 H -0.225 1.225 31 H -0.192 1.192 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.207 0.793 38 H 0.100 0.900 39 H 0.134 0.866 40 H 0.107 0.893 41 H 0.217 0.783 42 H 0.103 0.897 43 H 0.133 0.867 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.043 0.957 51 H 0.016 0.984 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.395 12.175 -23.385 31.046 hybrid contribution 1.181 -1.145 1.952 2.553 sum -15.213 11.030 -21.432 28.504 Atomic orbital electron populations 1.21716 0.91058 1.02865 1.03272 1.21302 0.98942 1.00675 0.90315 0.87395 1.19519 1.00221 0.97043 0.88407 1.19984 0.97588 1.04915 1.02794 1.24085 1.00623 0.96331 0.93169 1.77305 0.95499 1.20604 1.22340 1.48793 1.15862 1.28062 1.23599 1.22172 0.87988 1.04611 0.89955 1.22770 1.00176 0.95656 0.89404 1.21377 0.77059 0.86408 0.84757 1.90668 1.48102 1.20875 1.85866 1.48187 1.67035 1.12496 1.05649 1.22111 0.98198 0.78159 1.03026 1.21884 0.99408 0.99686 0.94925 1.21415 1.00579 0.94511 0.98520 1.20922 0.92418 0.92291 0.90004 0.98582 1.21914 0.96168 0.93442 0.85749 0.90545 1.22724 0.99015 0.95935 0.97558 1.21462 0.94963 0.85934 0.91991 1.44366 1.66994 1.01834 1.20527 1.19408 1.28871 0.92736 0.94966 0.89369 1.25721 1.02834 0.95429 1.02491 1.70186 1.52772 0.99853 1.37616 0.85051 0.77700 0.77094 0.79332 1.21005 1.22514 1.19172 0.91672 0.89931 0.92462 0.92474 0.91297 0.79284 0.89979 0.86647 0.89263 0.78260 0.89702 0.86698 0.87097 0.92010 0.91774 0.92733 0.91983 0.90724 0.95687 0.98444 0.94508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.61 71.98 0.62 -1.19 16 2 C -0.09 -1.70 1.89 -11.54 -0.02 -1.72 16 3 H 0.11 1.67 6.54 -2.38 -0.02 1.65 16 4 C -0.01 -0.25 4.53 29.85 0.14 -0.12 16 5 C -0.24 -4.15 4.82 -20.15 -0.10 -4.24 16 6 C 0.04 0.81 11.96 85.23 1.02 1.83 16 7 N -0.34 -6.92 12.58 -57.02 -0.72 -7.64 16 8 N -0.38 -5.63 4.01 -369.56 -1.48 -7.11 16 9 C 0.09 0.56 11.47 127.77 1.47 2.02 16 10 C 0.07 0.90 10.25 83.54 0.86 1.75 16 11 C 0.51 14.77 6.89 87.66 0.60 15.37 16 12 O -0.58 -21.64 12.86 -3.02 -0.04 -21.68 16 13 N -0.60 -17.16 2.96 -790.38 -2.34 -19.50 16 14 C 0.11 2.01 5.63 85.96 0.48 2.49 16 15 C -0.12 -2.57 5.93 30.79 0.18 -2.39 16 16 C -0.11 -3.64 5.45 30.26 0.16 -3.48 16 17 C 0.15 6.42 2.60 45.50 0.12 6.54 16 18 H 0.00 -0.15 8.03 -2.39 -0.02 -0.17 16 19 C 0.13 5.04 3.29 46.14 0.15 5.19 16 20 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 21 C -0.11 -5.10 5.07 31.59 0.16 -4.94 16 22 C 0.18 9.91 5.47 86.86 0.48 10.39 16 23 N -0.61 -32.87 3.35 -670.32 -2.25 -35.12 16 24 C -0.23 -13.14 9.94 84.03 0.84 -12.30 16 25 H 0.09 4.71 7.30 -2.91 -0.02 4.69 16 26 C -0.07 -4.23 5.49 84.86 0.47 -3.77 16 27 N -0.96 -59.89 10.46 21.65 0.23 -59.67 16 28 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 29 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 30 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 31 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 32 H 0.06 0.84 7.51 -2.39 -0.02 0.83 16 33 H 0.08 0.87 6.87 -2.39 -0.02 0.85 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.48 8.07 -2.39 -0.02 1.46 16 37 H 0.19 2.94 8.06 -2.91 -0.02 2.91 16 38 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.20 1.39 8.06 -2.91 -0.02 1.36 16 42 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.12 1.45 5.72 -2.39 -0.01 1.43 16 44 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 46 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 47 H 0.05 1.89 7.70 -2.39 -0.02 1.87 16 48 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 49 H 0.07 3.53 6.10 -2.39 -0.01 3.52 16 50 H 0.02 1.49 7.18 -2.39 -0.02 1.47 16 51 H 0.00 -0.17 7.81 -2.39 -0.02 -0.18 16 52 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -81.06 399.17 3.95 -77.12 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.90 Total: 13.38 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 7.62 Total: 11.44 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -6.56 Total: -129.03 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.04 Total: -21.68 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -81.06 3.95 -77.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049829271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.669 kcal (2) G-P(sol) polarization free energy of solvation -81.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds