Wall clock time and date at job start Wed Apr 1 2020 04:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47120 * 2 1 4 4 C 1.53001 * 109.46916 * 239.99674 * 2 1 3 5 5 C 1.50696 * 109.47076 * 65.00113 * 4 2 1 6 6 C 1.39864 * 126.03896 * 269.68720 * 5 4 2 7 7 N 1.30847 * 108.19955 * 179.81943 * 6 5 4 8 8 N 1.40078 * 108.20411 * 0.43974 * 7 6 5 9 9 C 1.46502 * 126.03297 * 179.74143 * 8 7 6 10 10 C 1.34946 * 107.92960 * 359.71987 * 8 7 6 11 11 C 1.50701 * 109.47130 * 119.99691 * 2 1 3 12 12 O 1.21284 * 119.99941 * 108.79781 * 11 2 1 13 13 N 1.34774 * 120.00265 * 288.79935 * 11 2 1 14 14 C 1.44328 * 116.66383 * 354.27515 * 13 11 2 15 15 C 1.51627 * 112.75850 * 154.57777 * 14 13 11 16 16 C 1.51328 * 111.92033 * 42.76032 * 15 14 13 17 17 C 1.50703 * 113.54881 * 304.66285 * 16 15 14 18 18 H 1.09003 * 109.34165 * 169.05912 * 17 16 15 19 19 C 1.54187 * 110.50871 * 289.38377 * 17 16 15 20 20 N 1.46927 * 106.26749 * 151.09444 * 19 17 16 21 21 C 1.36938 * 125.37566 * 162.17094 * 20 19 17 22 22 H 1.08000 * 120.00026 * 353.97204 * 21 20 19 23 23 C 1.38816 * 119.99685 * 173.96793 * 21 20 19 24 24 N 1.31618 * 119.99816 * 7.01112 * 23 21 20 25 25 Si 1.86796 * 119.99585 * 187.00663 * 23 21 20 26 26 H 1.48501 * 109.47012 * 94.98894 * 25 23 21 27 27 H 1.48500 * 109.46994 * 214.98233 * 25 23 21 28 28 H 1.48496 * 109.47520 * 334.98799 * 25 23 21 29 29 C 1.46815 * 109.24591 * 342.15095 * 20 19 17 30 30 C 1.44102 * 116.63309 * 174.26977 * 13 11 2 31 31 H 1.09005 * 108.45921 * 74.36811 * 30 13 11 32 32 H 1.09000 * 109.47180 * 169.29205 * 1 2 3 33 33 H 1.09004 * 109.47129 * 289.28799 * 1 2 3 34 34 H 1.08994 * 109.47493 * 49.29128 * 1 2 3 35 35 H 1.09007 * 109.46815 * 185.00188 * 4 2 1 36 36 H 1.09004 * 109.47341 * 304.99533 * 4 2 1 37 37 H 1.07995 * 125.90276 * 359.97438 * 6 5 4 38 38 H 1.09005 * 109.47003 * 269.96915 * 9 8 7 39 39 H 1.09002 * 109.47575 * 29.97366 * 9 8 7 40 40 H 1.09003 * 109.46910 * 149.97975 * 9 8 7 41 41 H 1.08002 * 126.13119 * 180.02562 * 10 8 7 42 42 H 1.08996 * 108.75327 * 33.75147 * 14 13 11 43 43 H 1.08998 * 108.82874 * 275.44848 * 14 13 11 44 44 H 1.09004 * 108.97734 * 282.16139 * 15 14 13 45 45 H 1.08999 * 108.97874 * 163.36748 * 15 14 13 46 46 H 1.09004 * 108.66672 * 65.70755 * 16 15 14 47 47 H 1.08997 * 108.67047 * 183.73682 * 16 15 14 48 48 H 1.09001 * 110.09708 * 270.29579 * 19 17 16 49 49 H 1.09004 * 110.09085 * 31.89345 * 19 17 16 50 50 H 0.96996 * 119.99301 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.84109 * 120.39988 * 29 20 19 52 52 H 1.09006 * 109.84045 * 241.31320 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6412 0.0569 -2.4765 6 6 0.4599 -0.1071 -3.2072 7 7 0.4702 0.7476 -4.1979 8 7 1.6647 1.4764 -4.1347 9 6 2.0795 2.5331 -5.0609 10 6 2.3656 1.0338 -3.0699 11 6 2.0323 -0.7103 1.2305 12 8 2.5535 -1.8009 1.1308 13 7 1.9023 -0.1338 2.4417 14 6 1.3893 1.2150 2.4653 15 6 0.7105 1.5615 3.7762 16 6 1.4926 1.0550 4.9685 17 6 1.7713 -0.4253 4.9210 18 1 2.4930 -0.6819 5.6965 19 6 0.4738 -1.2269 5.1478 20 7 0.6428 -2.4961 4.4272 21 6 -0.0974 -3.6295 4.6335 22 1 -0.8129 -3.6676 5.4416 23 6 0.0719 -4.7296 3.8039 24 7 1.0366 -4.7363 2.9086 25 14 -1.0693 -6.2003 3.9585 26 1 -2.1750 -6.0743 2.9752 27 1 -0.3087 -7.4473 3.6908 28 1 -1.6315 -6.2484 5.3321 29 6 1.7303 -2.3570 3.4507 30 6 2.2899 -0.9278 3.5801 31 1 3.3785 -0.9742 3.6140 32 1 -0.3633 -1.0098 -0.1909 33 1 -0.3633 0.3395 0.9700 34 1 -0.3634 0.6702 -0.7789 35 1 3.1263 -0.7996 -1.2055 36 1 1.6053 -1.7200 -1.2951 37 1 -0.3262 -0.8149 -2.9896 38 1 2.6422 2.0939 -5.8847 39 1 1.1976 3.0398 -5.4527 40 1 2.7076 3.2517 -4.5343 41 1 3.3315 1.3948 -2.7486 42 1 0.6697 1.3304 1.6549 43 1 2.2145 1.9082 2.3022 44 1 -0.2840 1.1155 3.7891 45 1 0.6138 2.6447 3.8498 46 1 2.4425 1.5875 5.0145 47 1 0.9273 1.2728 5.8747 48 1 0.3317 -1.4163 6.2117 49 1 -0.3794 -0.6794 4.7471 50 1 1.1551 -5.5051 2.3292 51 1 2.5150 -3.0825 3.6651 52 1 1.3453 -2.5154 2.4432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050175981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:53 Heat of formation + Delta-G solvation = 84.250424 kcal Electronic energy + Delta-G solvation = -32276.927264 eV Core-core repulsion = 28279.452518 eV Total energy + Delta-G solvation = -3997.474745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.32378 -40.54089 -37.85927 -35.52880 -34.84726 -33.21333 -32.88295 -31.94720 -30.44795 -29.45912 -27.63538 -27.11589 -25.82386 -25.49402 -24.17857 -22.92461 -21.92704 -21.11316 -20.69014 -19.92167 -18.86765 -17.76253 -17.17412 -16.72443 -16.31505 -15.73887 -15.46595 -15.29385 -14.91123 -14.53116 -14.44514 -14.02980 -13.92092 -13.65482 -13.61582 -13.35757 -12.98105 -12.93528 -12.74302 -12.52889 -12.44342 -12.08891 -11.93071 -11.84106 -11.56407 -11.27480 -11.14493 -11.01835 -10.92137 -10.76697 -10.68519 -10.49638 -10.43120 -10.20098 -10.11218 -9.92709 -9.79715 -9.54937 -9.49101 -8.89940 -8.40203 -8.32452 -7.84120 -6.62545 -5.53217 -2.88558 1.79765 2.41675 2.75139 3.22532 3.48556 3.53189 3.55956 3.61645 4.35851 4.61767 4.73023 4.77895 4.85944 4.96084 4.98314 5.04040 5.09152 5.11158 5.15448 5.25696 5.30702 5.44610 5.50288 5.58684 5.61208 5.62199 5.68685 5.78306 5.84877 5.88309 5.97256 6.01648 6.04000 6.07692 6.14159 6.26103 6.29685 6.30166 6.40801 6.51029 6.53499 6.62837 6.66424 6.78653 6.87824 6.92014 7.25197 7.62424 7.69578 7.89867 7.95422 8.18456 8.46777 8.86033 9.37901 9.99030 10.64538 11.55337 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.003404 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.876365 B = 8223.877376 C = 9913.967887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.023 4.023 5 C -0.221 4.221 6 C 0.057 3.943 7 N -0.302 5.302 8 N -0.382 5.382 9 C 0.104 3.896 10 C 0.050 3.950 11 C 0.501 3.499 12 O -0.504 6.504 13 N -0.591 5.591 14 C 0.107 3.893 15 C -0.128 4.128 16 C -0.101 4.101 17 C -0.103 4.103 18 H 0.077 0.923 19 C 0.143 3.857 20 N -0.607 5.607 21 C -0.236 4.236 22 H 0.075 0.925 23 C -0.004 4.004 24 N -0.904 5.904 25 Si 0.904 3.096 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.171 3.829 30 C 0.132 3.868 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.182 0.818 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.171 0.829 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.030 0.970 49 H 0.015 0.985 50 H 0.252 0.748 51 H 0.046 0.954 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 19.709 -9.536 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 H 0.102 0.898 4 C -0.062 4.062 5 C -0.233 4.233 6 C -0.129 4.129 7 N -0.124 5.124 8 N -0.165 5.165 9 C -0.038 4.038 10 C -0.095 4.095 11 C 0.288 3.712 12 O -0.378 6.378 13 N -0.325 5.325 14 C -0.017 4.017 15 C -0.165 4.165 16 C -0.139 4.139 17 C -0.123 4.123 18 H 0.096 0.904 19 C 0.017 3.983 20 N -0.334 5.334 21 C -0.364 4.364 22 H 0.092 0.908 23 C -0.201 4.201 24 N -0.550 5.550 25 Si 0.735 3.265 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C 0.046 3.954 30 C 0.028 3.972 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.199 0.801 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.188 0.812 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.048 0.952 49 H 0.032 0.968 50 H 0.062 0.938 51 H 0.064 0.936 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.213 19.488 -10.754 22.489 hybrid contribution -0.116 -0.933 0.881 1.289 sum 3.096 18.555 -9.873 21.245 Atomic orbital electron populations 1.21864 0.93048 1.03200 1.02002 1.21300 0.97694 0.99970 0.93278 0.89764 1.19713 1.01066 0.97786 0.87634 1.20150 0.97027 1.03508 1.02584 1.23873 0.98389 0.97956 0.92716 1.77343 1.02247 1.09508 1.23276 1.48412 1.14878 1.30343 1.22869 1.21794 1.01420 0.88069 0.92476 1.22325 0.98868 0.98056 0.90277 1.20614 0.79804 0.86275 0.84520 1.90796 1.41523 1.19563 1.85932 1.46679 1.65282 1.14073 1.06459 1.20952 0.98081 0.83528 0.99122 1.21113 1.00474 1.00633 0.94316 1.20476 0.99964 0.95381 0.98063 1.21341 0.99569 0.94540 0.96812 0.90426 1.21358 0.93595 0.87909 0.95484 1.44381 1.39055 1.07662 1.42282 1.18957 1.15633 0.90274 1.11531 0.90759 1.24853 0.98682 0.98258 0.98340 1.70032 1.31156 1.29968 1.23830 0.86221 0.80362 0.82570 0.77348 1.21742 1.21840 1.20811 1.21719 0.90516 0.87425 0.95709 1.21163 0.97599 0.94058 0.84344 0.92734 0.91529 0.91820 0.91954 0.90936 0.89882 0.80068 0.91012 0.89508 0.89668 0.81152 0.89995 0.93377 0.91208 0.91065 0.92621 0.91697 0.95211 0.96756 0.93767 0.93608 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.10 37.16 0.30 -1.60 16 2 C -0.10 -1.37 1.85 -91.77 -0.17 -1.54 16 3 H 0.08 0.95 7.34 -51.93 -0.38 0.57 16 4 C -0.02 -0.31 4.46 -27.88 -0.12 -0.43 16 5 C -0.22 -2.62 4.79 -105.06 -0.50 -3.13 16 6 C 0.06 0.70 10.97 -17.36 -0.19 0.51 16 7 N -0.30 -3.90 12.58 30.62 0.39 -3.51 16 8 N -0.38 -3.95 4.01 -68.16 -0.27 -4.22 16 9 C 0.10 0.60 11.47 59.85 0.69 1.29 16 10 C 0.05 0.50 11.40 -17.22 -0.20 0.31 16 11 C 0.50 9.12 6.03 -10.99 -0.07 9.05 16 12 O -0.50 -11.53 13.36 5.55 0.07 -11.46 16 13 N -0.59 -10.14 3.08 -170.15 -0.52 -10.67 16 14 C 0.11 1.36 5.26 -5.89 -0.03 1.33 16 15 C -0.13 -1.54 5.84 -28.27 -0.17 -1.70 16 16 C -0.10 -1.32 5.17 -28.73 -0.15 -1.47 16 17 C -0.10 -1.81 3.04 -91.50 -0.28 -2.08 16 18 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 19 C 0.14 3.03 6.65 -3.19 -0.02 3.01 16 20 N -0.61 -16.13 3.39 -171.27 -0.58 -16.71 16 21 C -0.24 -6.82 10.24 -15.06 -0.15 -6.98 16 22 H 0.07 2.08 7.84 -52.49 -0.41 1.67 16 23 C 0.00 -0.11 5.48 -17.43 -0.10 -0.21 16 24 N -0.90 -27.93 10.31 55.49 0.57 -27.36 16 25 Si 0.90 22.90 29.56 -169.99 -5.02 17.88 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 29 C 0.17 4.43 4.14 -3.33 -0.01 4.42 16 30 C 0.13 2.65 3.14 -69.02 -0.22 2.43 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.06 0.86 5.88 -51.93 -0.31 0.55 16 34 H 0.06 0.71 7.13 -51.93 -0.37 0.34 16 35 H 0.07 0.99 8.11 -51.93 -0.42 0.56 16 36 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 37 H 0.18 1.98 8.06 -52.49 -0.42 1.55 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.08 0.95 3.99 -51.93 -0.21 0.75 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.94 7.00 -51.93 -0.36 0.58 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 48 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.01 0.31 6.69 -51.93 -0.35 -0.04 16 50 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 51 H 0.05 1.36 7.52 -51.93 -0.39 0.97 16 52 H 0.08 2.36 4.57 -51.93 -0.24 2.12 16 LS Contribution 393.70 15.07 5.93 5.93 Total: -1.00 -36.45 393.70 -9.31 -45.75 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.48 Total: 1.16 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.39 Total: 3.20 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.42 Total: -62.48 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.45 -9.31 -45.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050175981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.004 kcal (2) G-P(sol) polarization free energy of solvation -36.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds