Wall clock time and date at job start Wed Apr 1 2020 04:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47120 * 2 1 4 4 C 1.53001 * 109.46916 * 239.99674 * 2 1 3 5 5 C 1.50696 * 109.47076 * 65.00113 * 4 2 1 6 6 C 1.39864 * 126.03896 * 269.68720 * 5 4 2 7 7 N 1.30847 * 108.19955 * 179.81943 * 6 5 4 8 8 N 1.40078 * 108.20411 * 0.43974 * 7 6 5 9 9 C 1.46502 * 126.03297 * 179.74143 * 8 7 6 10 10 C 1.34946 * 107.92960 * 359.71987 * 8 7 6 11 11 C 1.50701 * 109.47130 * 119.99691 * 2 1 3 12 12 O 1.21284 * 119.99941 * 108.79781 * 11 2 1 13 13 N 1.34774 * 120.00265 * 288.79935 * 11 2 1 14 14 C 1.44328 * 116.66383 * 354.27515 * 13 11 2 15 15 C 1.51627 * 112.75850 * 154.57777 * 14 13 11 16 16 C 1.51328 * 111.92033 * 42.76032 * 15 14 13 17 17 C 1.50703 * 113.54881 * 304.66285 * 16 15 14 18 18 H 1.09003 * 109.34165 * 169.05912 * 17 16 15 19 19 C 1.54187 * 110.50871 * 289.38377 * 17 16 15 20 20 N 1.46927 * 106.26749 * 151.09444 * 19 17 16 21 21 C 1.36938 * 125.37566 * 162.17094 * 20 19 17 22 22 H 1.08000 * 120.00026 * 353.97204 * 21 20 19 23 23 C 1.38816 * 119.99685 * 173.96793 * 21 20 19 24 24 N 1.31618 * 119.99816 * 7.01112 * 23 21 20 25 25 Si 1.86796 * 119.99585 * 187.00663 * 23 21 20 26 26 H 1.48501 * 109.47012 * 94.98894 * 25 23 21 27 27 H 1.48500 * 109.46994 * 214.98233 * 25 23 21 28 28 H 1.48496 * 109.47520 * 334.98799 * 25 23 21 29 29 C 1.46815 * 109.24591 * 342.15095 * 20 19 17 30 30 C 1.44102 * 116.63309 * 174.26977 * 13 11 2 31 31 H 1.09005 * 108.45921 * 74.36811 * 30 13 11 32 32 H 1.09000 * 109.47180 * 169.29205 * 1 2 3 33 33 H 1.09004 * 109.47129 * 289.28799 * 1 2 3 34 34 H 1.08994 * 109.47493 * 49.29128 * 1 2 3 35 35 H 1.09007 * 109.46815 * 185.00188 * 4 2 1 36 36 H 1.09004 * 109.47341 * 304.99533 * 4 2 1 37 37 H 1.07995 * 125.90276 * 359.97438 * 6 5 4 38 38 H 1.09005 * 109.47003 * 269.96915 * 9 8 7 39 39 H 1.09002 * 109.47575 * 29.97366 * 9 8 7 40 40 H 1.09003 * 109.46910 * 149.97975 * 9 8 7 41 41 H 1.08002 * 126.13119 * 180.02562 * 10 8 7 42 42 H 1.08996 * 108.75327 * 33.75147 * 14 13 11 43 43 H 1.08998 * 108.82874 * 275.44848 * 14 13 11 44 44 H 1.09004 * 108.97734 * 282.16139 * 15 14 13 45 45 H 1.08999 * 108.97874 * 163.36748 * 15 14 13 46 46 H 1.09004 * 108.66672 * 65.70755 * 16 15 14 47 47 H 1.08997 * 108.67047 * 183.73682 * 16 15 14 48 48 H 1.09001 * 110.09708 * 270.29579 * 19 17 16 49 49 H 1.09004 * 110.09085 * 31.89345 * 19 17 16 50 50 H 0.96996 * 119.99301 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.84109 * 120.39988 * 29 20 19 52 52 H 1.09006 * 109.84045 * 241.31320 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6412 0.0569 -2.4765 6 6 0.4599 -0.1071 -3.2072 7 7 0.4702 0.7476 -4.1979 8 7 1.6647 1.4764 -4.1347 9 6 2.0795 2.5331 -5.0609 10 6 2.3656 1.0338 -3.0699 11 6 2.0323 -0.7103 1.2305 12 8 2.5535 -1.8009 1.1308 13 7 1.9023 -0.1338 2.4417 14 6 1.3893 1.2150 2.4653 15 6 0.7105 1.5615 3.7762 16 6 1.4926 1.0550 4.9685 17 6 1.7713 -0.4253 4.9210 18 1 2.4930 -0.6819 5.6965 19 6 0.4738 -1.2269 5.1478 20 7 0.6428 -2.4961 4.4272 21 6 -0.0974 -3.6295 4.6335 22 1 -0.8129 -3.6676 5.4416 23 6 0.0719 -4.7296 3.8039 24 7 1.0366 -4.7363 2.9086 25 14 -1.0693 -6.2003 3.9585 26 1 -2.1750 -6.0743 2.9752 27 1 -0.3087 -7.4473 3.6908 28 1 -1.6315 -6.2484 5.3321 29 6 1.7303 -2.3570 3.4507 30 6 2.2899 -0.9278 3.5801 31 1 3.3785 -0.9742 3.6140 32 1 -0.3633 -1.0098 -0.1909 33 1 -0.3633 0.3395 0.9700 34 1 -0.3634 0.6702 -0.7789 35 1 3.1263 -0.7996 -1.2055 36 1 1.6053 -1.7200 -1.2951 37 1 -0.3262 -0.8149 -2.9896 38 1 2.6422 2.0939 -5.8847 39 1 1.1976 3.0398 -5.4527 40 1 2.7076 3.2517 -4.5343 41 1 3.3315 1.3948 -2.7486 42 1 0.6697 1.3304 1.6549 43 1 2.2145 1.9082 2.3022 44 1 -0.2840 1.1155 3.7891 45 1 0.6138 2.6447 3.8498 46 1 2.4425 1.5875 5.0145 47 1 0.9273 1.2728 5.8747 48 1 0.3317 -1.4163 6.2117 49 1 -0.3794 -0.6794 4.7471 50 1 1.1551 -5.5051 2.3292 51 1 2.5150 -3.0825 3.6651 52 1 1.3453 -2.5154 2.4432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050175981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:51 Heat of formation + Delta-G solvation = 59.947535 kcal Electronic energy + Delta-G solvation = -32277.981116 eV Core-core repulsion = 28279.452518 eV Total energy + Delta-G solvation = -3998.528598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.26379 -41.86119 -39.34503 -37.06758 -36.08876 -34.65653 -33.80302 -33.62964 -31.68144 -30.99591 -28.84558 -28.34345 -27.29116 -26.72735 -25.69863 -24.18338 -23.29162 -22.34707 -21.91302 -21.03998 -20.15942 -19.26684 -18.63749 -18.17358 -17.38832 -17.12376 -16.86102 -16.48576 -16.11926 -16.08585 -15.74091 -15.31996 -15.18464 -15.03062 -14.80294 -14.30977 -14.19602 -14.06554 -13.78860 -13.71697 -13.64671 -13.40194 -13.21146 -13.05198 -13.01238 -12.88990 -12.78572 -12.64296 -12.39421 -12.19384 -12.06954 -11.96657 -11.75195 -11.70765 -11.47576 -11.42189 -11.36493 -11.29504 -10.72131 -10.32056 -10.21214 -9.31591 -9.22123 -8.80495 -7.78017 -5.16597 0.99561 1.41672 1.44807 1.53803 1.75230 1.81282 1.83147 2.30500 2.50061 3.35159 3.51479 3.69029 3.74391 3.85142 3.88747 3.95463 4.04635 4.10551 4.11918 4.15385 4.19263 4.38302 4.48918 4.49551 4.53793 4.58109 4.65473 4.73322 4.74204 4.75378 4.77065 4.83688 4.91305 4.95277 4.96615 4.98470 5.03575 5.19832 5.22617 5.26622 5.31593 5.41650 5.43384 5.46839 5.51606 5.58439 5.71841 5.87212 6.12876 6.21595 6.28939 6.61542 6.77675 7.12295 7.46779 7.84268 8.47222 9.28230 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.003404 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.876365 B = 8223.877376 C = 9913.967887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.123 0.877 4 C -0.012 4.012 5 C -0.241 4.241 6 C 0.044 3.956 7 N -0.333 5.333 8 N -0.379 5.379 9 C 0.094 3.906 10 C 0.068 3.932 11 C 0.490 3.510 12 O -0.565 6.565 13 N -0.589 5.589 14 C 0.094 3.906 15 C -0.126 4.126 16 C -0.097 4.097 17 C -0.090 4.090 18 H 0.080 0.920 19 C 0.137 3.863 20 N -0.630 5.630 21 C -0.247 4.247 22 H 0.082 0.918 23 C -0.066 4.066 24 N -0.937 5.937 25 Si 0.974 3.026 26 H -0.288 1.288 27 H -0.297 1.297 28 H -0.264 1.264 29 C 0.185 3.815 30 C 0.144 3.856 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.181 0.819 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.207 0.793 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.035 0.965 49 H 0.023 0.977 50 H 0.241 0.759 51 H -0.013 1.013 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.287 24.238 -9.297 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.141 0.859 4 C -0.051 4.051 5 C -0.252 4.252 6 C -0.141 4.141 7 N -0.155 5.155 8 N -0.162 5.162 9 C -0.046 4.046 10 C -0.079 4.079 11 C 0.279 3.721 12 O -0.443 6.443 13 N -0.322 5.322 14 C -0.027 4.027 15 C -0.163 4.163 16 C -0.135 4.135 17 C -0.109 4.109 18 H 0.098 0.902 19 C 0.012 3.988 20 N -0.357 5.357 21 C -0.377 4.377 22 H 0.100 0.900 23 C -0.260 4.260 24 N -0.585 5.585 25 Si 0.802 3.198 26 H -0.215 1.215 27 H -0.224 1.224 28 H -0.188 1.188 29 C 0.060 3.940 30 C 0.039 3.961 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.198 0.802 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.224 0.776 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.134 0.866 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.053 0.947 49 H 0.041 0.959 50 H 0.051 0.949 51 H 0.005 0.995 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.959 24.103 -10.493 26.454 hybrid contribution -0.012 -2.311 0.797 2.445 sum 2.947 21.791 -9.696 24.033 Atomic orbital electron populations 1.21789 0.92688 1.01956 1.02765 1.21281 0.97628 1.01098 0.90676 0.85892 1.19473 1.00416 0.96392 0.88809 1.19952 0.97734 1.04907 1.02613 1.23950 0.98877 0.98206 0.93035 1.77291 1.04106 1.10406 1.23710 1.48791 1.13923 1.30295 1.23159 1.22189 1.02206 0.87608 0.92617 1.22787 0.99361 0.96580 0.89195 1.21551 0.78739 0.85746 0.86099 1.90778 1.44261 1.22364 1.86889 1.46766 1.64789 1.15607 1.05048 1.21386 0.99749 0.81092 1.00497 1.21177 0.98920 1.03215 0.93014 1.20500 1.01923 0.91461 0.99605 1.21335 0.97244 0.97543 0.94805 0.90168 1.21601 0.95933 0.86231 0.95013 1.44713 1.38880 1.09034 1.43041 1.19394 1.15521 0.91330 1.11410 0.90037 1.25749 1.00302 1.01512 0.98440 1.70336 1.33040 1.30255 1.24876 0.85125 0.78051 0.78534 0.78047 1.21507 1.22375 1.18836 1.21284 0.88713 0.90202 0.93817 1.20716 0.96902 0.91473 0.87021 0.93489 0.94589 0.91753 0.89518 0.91353 0.93538 0.80240 0.89927 0.89247 0.86441 0.77597 0.88623 0.89918 0.93018 0.86599 0.90063 0.89758 0.94652 0.95889 0.94923 0.99518 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.10 71.98 0.58 -2.93 16 2 C -0.09 -2.27 1.85 -11.54 -0.02 -2.29 16 3 H 0.12 2.34 7.34 -2.39 -0.02 2.32 16 4 C -0.01 -0.32 4.46 29.85 0.13 -0.19 16 5 C -0.24 -5.52 4.79 -20.15 -0.10 -5.61 16 6 C 0.04 1.10 10.97 85.23 0.93 2.03 16 7 N -0.33 -8.27 12.58 -57.03 -0.72 -8.98 16 8 N -0.38 -6.86 4.01 -369.54 -1.48 -8.35 16 9 C 0.09 0.77 11.47 127.77 1.47 2.24 16 10 C 0.07 1.17 11.40 83.54 0.95 2.12 16 11 C 0.49 18.33 6.03 87.66 0.53 18.86 16 12 O -0.56 -27.96 13.36 -3.04 -0.04 -28.00 16 13 N -0.59 -19.83 3.08 -810.64 -2.50 -22.33 16 14 C 0.09 2.04 5.26 86.33 0.45 2.49 16 15 C -0.13 -2.43 5.84 29.60 0.17 -2.26 16 16 C -0.10 -2.13 5.17 29.30 0.15 -1.98 16 17 C -0.09 -3.02 3.04 -11.37 -0.03 -3.06 16 18 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 19 C 0.14 5.77 6.65 86.70 0.58 6.34 16 20 N -0.63 -34.83 3.39 -695.78 -2.36 -37.19 16 21 C -0.25 -14.83 10.24 84.03 0.86 -13.97 16 22 H 0.08 4.63 7.84 -2.91 -0.02 4.61 16 23 C -0.07 -4.07 5.48 84.86 0.46 -3.61 16 24 N -0.94 -62.07 10.31 21.65 0.22 -61.85 16 25 Si 0.97 48.96 29.56 68.60 2.03 50.99 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 27 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 28 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 29 C 0.19 10.26 4.14 86.67 0.36 10.62 16 30 C 0.14 5.89 3.14 45.56 0.14 6.03 16 31 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.03 1.14 8.08 -2.39 -0.02 1.12 16 33 H 0.06 1.66 5.88 -2.38 -0.01 1.64 16 34 H 0.09 1.85 7.13 -2.39 -0.02 1.83 16 35 H 0.07 1.91 8.11 -2.38 -0.02 1.90 16 36 H 0.05 1.60 8.08 -2.38 -0.02 1.58 16 37 H 0.18 4.21 8.06 -2.91 -0.02 4.18 16 38 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.10 1.84 3.99 -2.39 -0.01 1.83 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.05 1.21 7.00 -2.38 -0.02 1.19 16 45 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 47 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 48 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.02 0.95 6.69 -2.39 -0.02 0.94 16 50 H 0.24 15.74 8.31 -92.71 -0.77 14.97 16 51 H -0.01 -0.88 7.52 -2.39 -0.02 -0.90 16 52 H 0.05 2.96 4.57 -2.38 -0.01 2.95 16 Total: -1.00 -88.91 393.70 3.69 -85.22 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.91 Total: 15.65 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 7.63 Total: 14.84 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -6.83 Total: -138.71 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.04 Total: -28.00 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.03 Total: 50.99 kcal Total: -88.91 3.69 -85.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050175981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.170 kcal (2) G-P(sol) polarization free energy of solvation -88.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds