Wall clock time and date at job start Wed Apr 1 2020 04:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46717 * 2 1 4 4 C 1.52997 * 109.47166 * 120.00194 * 2 1 3 5 5 C 1.50701 * 109.46962 * 294.99582 * 4 2 1 6 6 C 1.39866 * 126.04117 * 269.69060 * 5 4 2 7 7 N 1.30836 * 108.20306 * 179.82175 * 6 5 4 8 8 N 1.40089 * 108.20507 * 0.43915 * 7 6 5 9 9 C 1.46497 * 126.03704 * 179.69977 * 8 7 6 10 10 C 1.34952 * 107.92315 * 359.71787 * 8 7 6 11 11 C 1.50700 * 109.46769 * 240.00159 * 2 1 3 12 12 O 1.21285 * 120.00095 * 278.04551 * 11 2 1 13 13 N 1.34776 * 119.99981 * 97.77369 * 11 2 1 14 14 C 1.47168 * 136.00082 * 174.48753 * 13 11 2 15 15 C 1.52649 * 87.96833 * 206.71892 * 14 13 11 16 16 C 1.47166 * 136.00109 * 354.85159 * 13 11 2 17 17 C 1.52551 * 113.89804 * 88.17308 * 15 14 13 18 18 C 1.53349 * 109.13181 * 190.30375 * 17 15 14 19 19 N 1.46887 * 108.74842 * 307.75678 * 18 17 15 20 20 C 1.36934 * 120.46277 * 235.59894 * 19 18 17 21 21 H 1.08000 * 119.99974 * 31.75485 * 20 19 18 22 22 C 1.38816 * 120.00109 * 211.74962 * 20 19 18 23 23 N 1.31615 * 120.00118 * 16.83931 * 22 20 19 24 24 Si 1.86797 * 120.00097 * 196.83780 * 22 20 19 25 25 H 1.48509 * 109.46941 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47341 * 119.99919 * 24 22 20 27 27 H 1.48501 * 109.47220 * 240.00519 * 24 22 20 28 28 C 1.46897 * 119.07346 * 55.62621 * 19 18 17 29 29 C 1.52558 * 114.25507 * 220.75935 * 15 14 13 30 30 H 1.09003 * 109.47399 * 185.49864 * 1 2 3 31 31 H 1.09005 * 109.47234 * 305.49277 * 1 2 3 32 32 H 1.09001 * 109.47355 * 65.48816 * 1 2 3 33 33 H 1.09002 * 109.47341 * 55.00059 * 4 2 1 34 34 H 1.08997 * 109.47109 * 174.99857 * 4 2 1 35 35 H 1.08000 * 125.89767 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.47052 * 270.01872 * 9 8 7 37 37 H 1.08993 * 109.47671 * 30.02764 * 9 8 7 38 38 H 1.09006 * 109.46860 * 150.02837 * 9 8 7 39 39 H 1.07999 * 126.12197 * 180.02562 * 10 8 7 40 40 H 1.09000 * 113.48627 * 321.40943 * 14 13 11 41 41 H 1.08988 * 113.49412 * 91.91450 * 14 13 11 42 42 H 1.09004 * 113.48598 * 268.08441 * 16 13 11 43 43 H 1.08995 * 113.48742 * 38.52718 * 16 13 11 44 44 H 1.08998 * 109.52749 * 310.20165 * 17 15 14 45 45 H 1.09004 * 109.52798 * 70.40759 * 17 15 14 46 46 H 1.09003 * 109.59679 * 187.97689 * 18 17 15 47 47 H 1.09001 * 109.59222 * 67.53411 * 18 17 15 48 48 H 0.96997 * 120.00629 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.58952 * 184.58807 * 28 19 18 50 50 H 1.08997 * 109.59401 * 64.14264 * 28 19 18 51 51 H 1.08996 * 109.52821 * 289.75155 * 29 15 14 52 52 H 1.08999 * 109.52911 * 49.89598 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0571 2.4765 6 6 2.3928 1.0626 3.0933 7 7 1.7183 1.5028 4.1244 8 7 0.5189 0.7832 4.2023 9 6 -0.5256 0.9559 5.2148 10 6 0.4958 -0.0975 3.1800 11 6 2.0322 -0.7104 -1.2305 12 8 2.0957 -1.9214 -1.2481 13 7 2.4057 -0.0002 -2.3134 14 6 3.0196 -0.3011 -3.6166 15 6 3.5749 1.1208 -3.6222 16 6 2.3844 1.4172 -2.7087 17 6 4.9322 1.2569 -2.9394 18 6 5.2663 2.7447 -2.7771 19 7 5.1260 3.4051 -4.0817 20 6 6.1698 4.1101 -4.6188 21 1 7.1866 3.8061 -4.4184 22 6 5.9211 5.2154 -5.4209 23 7 4.7357 5.7871 -5.4044 24 14 7.2688 5.8914 -6.5236 25 1 8.4987 5.0754 -6.3593 26 1 6.8242 5.8362 -7.9394 27 1 7.5550 7.2997 -6.1491 28 6 3.8500 3.2991 -4.8018 29 6 3.5060 1.8152 -4.9789 30 1 -0.3634 -1.0229 0.0985 31 1 -0.3634 0.5967 0.8367 32 1 -0.3634 0.4264 -0.9350 33 1 1.6054 -1.7199 1.2951 34 1 3.1263 -0.7995 1.2055 35 1 3.3611 1.4170 2.7719 36 1 -0.3249 0.2973 6.0598 37 1 -0.5342 1.9913 5.5551 38 1 -1.4951 0.7074 4.7828 39 1 -0.2954 -0.7996 2.9622 40 1 3.7930 -1.0675 -3.5659 41 1 2.2924 -0.4866 -4.4070 42 1 1.4824 1.7038 -3.2496 43 1 2.6212 2.0995 -1.8924 44 1 4.8958 0.7825 -1.9587 45 1 5.6969 0.7762 -3.5496 46 1 6.2909 2.8526 -2.4212 47 1 4.5793 3.1978 -2.0624 48 1 4.5618 6.5593 -5.9651 49 1 3.9418 3.7722 -5.7795 50 1 3.0644 3.7905 -4.2278 51 1 4.2206 1.3543 -5.6608 52 1 2.4996 1.7196 -5.3865 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050716884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:37 Heat of formation + Delta-G solvation = 94.672503 kcal Electronic energy + Delta-G solvation = -30989.140580 eV Core-core repulsion = 26992.117770 eV Total energy + Delta-G solvation = -3997.022810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.46217 -40.75640 -38.61600 -35.90482 -35.16285 -33.23134 -32.45033 -30.80244 -30.31144 -29.70230 -28.05180 -27.24605 -25.96780 -25.84215 -24.33434 -22.75649 -22.32209 -21.26929 -20.80367 -20.17474 -18.83793 -17.99326 -17.27316 -16.76423 -16.49294 -15.86897 -15.54190 -15.38266 -14.88207 -14.75612 -14.48354 -14.06261 -13.92132 -13.72525 -13.57692 -13.39524 -13.18616 -13.13357 -12.92428 -12.68603 -12.54152 -12.44751 -12.20793 -12.10039 -11.83337 -11.51419 -11.40870 -11.33767 -11.21354 -11.06964 -10.75797 -10.63958 -10.48573 -10.29617 -10.14545 -9.82161 -9.72881 -9.62655 -9.61074 -9.28780 -8.57863 -8.50006 -8.46676 -6.63173 -5.81346 -3.26558 1.66263 2.29201 2.55622 2.75381 3.03549 3.35759 3.44437 3.46515 4.23842 4.44118 4.48351 4.57966 4.63704 4.76599 4.78009 4.92537 4.94775 5.04300 5.08561 5.24518 5.27200 5.30166 5.37423 5.38859 5.53420 5.58400 5.59856 5.63380 5.66119 5.69314 5.73340 5.83059 5.91622 5.93951 6.04712 6.06059 6.11117 6.16488 6.26613 6.46520 6.46938 6.57787 6.61712 6.65250 6.76924 6.82516 6.95117 7.29576 7.49188 7.58928 7.80155 7.91217 8.28758 8.46165 9.20436 9.82895 10.41114 11.26827 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.002404 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.171798 B =11646.612326 C =12811.424881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 H 0.089 0.911 4 C -0.022 4.022 5 C -0.229 4.229 6 C 0.055 3.945 7 N -0.298 5.298 8 N -0.380 5.380 9 C 0.102 3.898 10 C 0.057 3.943 11 C 0.545 3.455 12 O -0.552 6.552 13 N -0.641 5.641 14 C 0.106 3.894 15 C -0.075 4.075 16 C 0.108 3.892 17 C -0.106 4.106 18 C 0.148 3.852 19 N -0.590 5.590 20 C -0.254 4.254 21 H 0.063 0.937 22 C 0.006 3.994 23 N -0.900 5.900 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.175 3.825 29 C -0.125 4.125 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.184 0.816 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.172 0.828 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.018 0.982 48 H 0.253 0.747 49 H 0.083 0.917 50 H 0.019 0.981 51 H 0.062 0.938 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.129 -11.660 14.699 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.061 4.061 5 C -0.241 4.241 6 C -0.131 4.131 7 N -0.119 5.119 8 N -0.162 5.162 9 C -0.039 4.039 10 C -0.089 4.089 11 C 0.335 3.665 12 O -0.430 6.430 13 N -0.376 5.376 14 C -0.017 4.017 15 C -0.076 4.076 16 C -0.015 4.015 17 C -0.145 4.145 18 C 0.022 3.978 19 N -0.312 5.312 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.193 4.193 23 N -0.544 5.544 24 Si 0.729 3.271 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.049 3.951 29 C -0.165 4.165 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.201 0.799 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.189 0.811 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.035 0.965 48 H 0.063 0.937 49 H 0.101 0.899 50 H 0.037 0.963 51 H 0.081 0.919 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.361 -11.429 15.917 23.168 hybrid contribution 0.450 -0.071 -1.320 1.396 sum -11.911 -11.501 14.597 22.073 Atomic orbital electron populations 1.21694 0.92894 1.02441 1.02246 1.21190 0.97621 1.00838 0.92258 0.89228 1.19701 1.01148 0.97331 0.87920 1.20020 0.96720 1.04845 1.02502 1.23884 1.00172 0.95841 0.93180 1.77384 0.93982 1.18740 1.21800 1.48465 1.16100 1.28732 1.22940 1.21831 0.87781 1.04211 0.90093 1.22329 1.00037 0.96224 0.90310 1.20225 0.76237 0.86807 0.83183 1.90667 1.55255 1.13931 1.83167 1.49759 1.61538 1.10923 1.15337 1.23103 0.96004 0.98561 0.84008 1.21632 0.95037 0.93756 0.97131 1.23145 0.98500 0.82211 0.97601 1.21717 0.94140 1.00088 0.98599 1.20892 0.98737 0.89561 0.88660 1.43984 1.12098 1.59174 1.15957 1.19181 0.87115 1.05403 1.26690 0.91892 1.25112 0.96737 0.95713 1.01761 1.70032 1.21841 1.21912 1.40610 0.86278 0.81660 0.78542 0.80610 1.20210 1.21559 1.21731 1.20712 0.86858 0.89135 0.98427 1.22078 1.00120 1.00632 0.93680 0.92047 0.91562 0.92546 0.90346 0.90818 0.79924 0.90876 0.89319 0.89567 0.81122 0.90905 0.90281 0.89834 0.90285 0.92954 0.91754 0.92642 0.96456 0.93690 0.89858 0.96259 0.91897 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.74 37.16 0.32 -0.98 16 2 C -0.10 -1.10 2.62 -91.77 -0.24 -1.34 16 3 H 0.09 1.01 7.52 -51.93 -0.39 0.62 16 4 C -0.02 -0.23 4.79 -27.88 -0.13 -0.36 16 5 C -0.23 -2.31 4.82 -105.05 -0.51 -2.82 16 6 C 0.06 0.61 11.96 -17.37 -0.21 0.40 16 7 N -0.30 -3.57 12.58 30.62 0.39 -3.19 16 8 N -0.38 -3.55 4.01 -68.16 -0.27 -3.82 16 9 C 0.10 0.52 11.47 59.85 0.69 1.20 16 10 C 0.06 0.49 10.18 -17.22 -0.18 0.32 16 11 C 0.55 7.89 7.03 -10.99 -0.08 7.81 16 12 O -0.55 -9.74 17.22 5.55 0.10 -9.64 16 13 N -0.64 -9.06 3.46 -185.30 -0.64 -9.70 16 14 C 0.11 1.48 7.76 -8.36 -0.06 1.41 16 15 C -0.07 -1.13 0.83 -155.17 -0.13 -1.26 16 16 C 0.11 1.48 7.17 -8.20 -0.06 1.42 16 17 C -0.11 -1.74 5.25 -26.78 -0.14 -1.88 16 18 C 0.15 2.91 6.41 -3.65 -0.02 2.89 16 19 N -0.59 -13.89 2.94 -172.18 -0.51 -14.39 16 20 C -0.25 -6.71 9.52 -15.06 -0.14 -6.86 16 21 H 0.06 1.66 7.88 -52.49 -0.41 1.24 16 22 C 0.01 0.16 4.88 -17.43 -0.09 0.07 16 23 N -0.90 -25.27 11.41 55.49 0.63 -24.64 16 24 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 C 0.17 3.81 5.25 -3.64 -0.02 3.79 16 29 C -0.13 -2.12 5.31 -26.77 -0.14 -2.26 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.57 6.76 -51.93 -0.35 0.22 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.84 8.02 -51.93 -0.42 0.43 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.18 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.08 1.01 8.09 -51.94 -0.42 0.59 16 42 H 0.08 1.06 8.06 -51.93 -0.42 0.65 16 43 H 0.08 1.09 7.20 -51.93 -0.37 0.72 16 44 H 0.05 0.80 7.95 -51.93 -0.41 0.39 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 47 H 0.02 0.34 7.60 -51.93 -0.39 -0.05 16 48 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.08 2.08 6.21 -51.93 -0.32 1.76 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 52 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 413.66 15.07 6.23 6.23 Total: -1.00 -32.87 413.66 -9.19 -42.06 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.95 Total: -0.61 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.14 Total: 1.58 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.40 Total: -55.74 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.10 Total: -9.64 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.87 -9.19 -42.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050716884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.730 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds