Wall clock time and date at job start Wed Apr 1 2020 04:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46717 * 2 1 4 4 C 1.52997 * 109.47166 * 120.00194 * 2 1 3 5 5 C 1.50701 * 109.46962 * 294.99582 * 4 2 1 6 6 C 1.39866 * 126.04117 * 269.69060 * 5 4 2 7 7 N 1.30836 * 108.20306 * 179.82175 * 6 5 4 8 8 N 1.40089 * 108.20507 * 0.43915 * 7 6 5 9 9 C 1.46497 * 126.03704 * 179.69977 * 8 7 6 10 10 C 1.34952 * 107.92315 * 359.71787 * 8 7 6 11 11 C 1.50700 * 109.46769 * 240.00159 * 2 1 3 12 12 O 1.21285 * 120.00095 * 278.04551 * 11 2 1 13 13 N 1.34776 * 119.99981 * 97.77369 * 11 2 1 14 14 C 1.47168 * 136.00082 * 174.48753 * 13 11 2 15 15 C 1.52649 * 87.96833 * 206.71892 * 14 13 11 16 16 C 1.47166 * 136.00109 * 354.85159 * 13 11 2 17 17 C 1.52551 * 113.89804 * 88.17308 * 15 14 13 18 18 C 1.53349 * 109.13181 * 190.30375 * 17 15 14 19 19 N 1.46887 * 108.74842 * 307.75678 * 18 17 15 20 20 C 1.36934 * 120.46277 * 235.59894 * 19 18 17 21 21 H 1.08000 * 119.99974 * 31.75485 * 20 19 18 22 22 C 1.38816 * 120.00109 * 211.74962 * 20 19 18 23 23 N 1.31615 * 120.00118 * 16.83931 * 22 20 19 24 24 Si 1.86797 * 120.00097 * 196.83780 * 22 20 19 25 25 H 1.48509 * 109.46941 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47341 * 119.99919 * 24 22 20 27 27 H 1.48501 * 109.47220 * 240.00519 * 24 22 20 28 28 C 1.46897 * 119.07346 * 55.62621 * 19 18 17 29 29 C 1.52558 * 114.25507 * 220.75935 * 15 14 13 30 30 H 1.09003 * 109.47399 * 185.49864 * 1 2 3 31 31 H 1.09005 * 109.47234 * 305.49277 * 1 2 3 32 32 H 1.09001 * 109.47355 * 65.48816 * 1 2 3 33 33 H 1.09002 * 109.47341 * 55.00059 * 4 2 1 34 34 H 1.08997 * 109.47109 * 174.99857 * 4 2 1 35 35 H 1.08000 * 125.89767 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.47052 * 270.01872 * 9 8 7 37 37 H 1.08993 * 109.47671 * 30.02764 * 9 8 7 38 38 H 1.09006 * 109.46860 * 150.02837 * 9 8 7 39 39 H 1.07999 * 126.12197 * 180.02562 * 10 8 7 40 40 H 1.09000 * 113.48627 * 321.40943 * 14 13 11 41 41 H 1.08988 * 113.49412 * 91.91450 * 14 13 11 42 42 H 1.09004 * 113.48598 * 268.08441 * 16 13 11 43 43 H 1.08995 * 113.48742 * 38.52718 * 16 13 11 44 44 H 1.08998 * 109.52749 * 310.20165 * 17 15 14 45 45 H 1.09004 * 109.52798 * 70.40759 * 17 15 14 46 46 H 1.09003 * 109.59679 * 187.97689 * 18 17 15 47 47 H 1.09001 * 109.59222 * 67.53411 * 18 17 15 48 48 H 0.96997 * 120.00629 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.58952 * 184.58807 * 28 19 18 50 50 H 1.08997 * 109.59401 * 64.14264 * 28 19 18 51 51 H 1.08996 * 109.52821 * 289.75155 * 29 15 14 52 52 H 1.08999 * 109.52911 * 49.89598 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0571 2.4765 6 6 2.3928 1.0626 3.0933 7 7 1.7183 1.5028 4.1244 8 7 0.5189 0.7832 4.2023 9 6 -0.5256 0.9559 5.2148 10 6 0.4958 -0.0975 3.1800 11 6 2.0322 -0.7104 -1.2305 12 8 2.0957 -1.9214 -1.2481 13 7 2.4057 -0.0002 -2.3134 14 6 3.0196 -0.3011 -3.6166 15 6 3.5749 1.1208 -3.6222 16 6 2.3844 1.4172 -2.7087 17 6 4.9322 1.2569 -2.9394 18 6 5.2663 2.7447 -2.7771 19 7 5.1260 3.4051 -4.0817 20 6 6.1698 4.1101 -4.6188 21 1 7.1866 3.8061 -4.4184 22 6 5.9211 5.2154 -5.4209 23 7 4.7357 5.7871 -5.4044 24 14 7.2688 5.8914 -6.5236 25 1 8.4987 5.0754 -6.3593 26 1 6.8242 5.8362 -7.9394 27 1 7.5550 7.2997 -6.1491 28 6 3.8500 3.2991 -4.8018 29 6 3.5060 1.8152 -4.9789 30 1 -0.3634 -1.0229 0.0985 31 1 -0.3634 0.5967 0.8367 32 1 -0.3634 0.4264 -0.9350 33 1 1.6054 -1.7199 1.2951 34 1 3.1263 -0.7995 1.2055 35 1 3.3611 1.4170 2.7719 36 1 -0.3249 0.2973 6.0598 37 1 -0.5342 1.9913 5.5551 38 1 -1.4951 0.7074 4.7828 39 1 -0.2954 -0.7996 2.9622 40 1 3.7930 -1.0675 -3.5659 41 1 2.2924 -0.4866 -4.4070 42 1 1.4824 1.7038 -3.2496 43 1 2.6212 2.0995 -1.8924 44 1 4.8958 0.7825 -1.9587 45 1 5.6969 0.7762 -3.5496 46 1 6.2909 2.8526 -2.4212 47 1 4.5793 3.1978 -2.0624 48 1 4.5618 6.5593 -5.9651 49 1 3.9418 3.7722 -5.7795 50 1 3.0644 3.7905 -4.2278 51 1 4.2206 1.3543 -5.6608 52 1 2.4996 1.7196 -5.3865 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050716884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:36 Heat of formation + Delta-G solvation = 76.012248 kcal Electronic energy + Delta-G solvation = -30989.949749 eV Core-core repulsion = 26992.117770 eV Total energy + Delta-G solvation = -3997.831979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.22118 -41.91059 -39.81136 -37.51704 -36.05751 -34.23371 -33.86221 -32.24310 -31.49795 -31.03512 -28.77878 -28.55348 -27.08726 -26.59697 -25.99542 -24.01867 -23.68425 -22.31213 -21.92839 -20.98749 -20.04822 -19.38235 -18.40314 -18.07707 -17.46728 -16.86436 -16.77612 -16.67179 -16.18636 -15.73639 -15.54146 -15.32091 -15.20878 -14.99651 -14.92467 -14.60890 -14.13516 -14.03058 -13.91233 -13.81684 -13.52481 -13.31056 -13.19402 -13.15487 -12.98245 -12.95354 -12.91982 -12.68281 -12.56147 -12.22576 -12.15981 -12.04483 -11.98106 -11.78652 -11.41833 -11.31534 -11.21757 -11.10267 -10.60815 -10.45136 -10.33064 -9.67883 -9.26490 -8.55799 -7.83440 -5.30870 0.97653 1.47510 1.50766 1.60090 1.61058 1.71921 1.77375 2.00881 2.54307 3.26296 3.37357 3.49321 3.70654 3.75531 3.87356 3.92919 4.03224 4.09467 4.15997 4.26993 4.36163 4.39535 4.46483 4.50052 4.54126 4.55685 4.63274 4.66291 4.67000 4.72377 4.74181 4.81239 4.85574 4.89161 4.91874 4.96438 4.99970 5.09577 5.15188 5.19447 5.22603 5.25816 5.35895 5.39345 5.42162 5.57401 5.71525 5.71638 5.83668 6.18407 6.46675 6.76334 6.78847 7.16593 7.22023 7.92843 8.44494 9.21786 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.002404 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.171798 B =11646.612326 C =12811.424881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 H 0.089 0.911 4 C -0.012 4.012 5 C -0.244 4.244 6 C 0.042 3.958 7 N -0.337 5.337 8 N -0.381 5.381 9 C 0.092 3.908 10 C 0.068 3.932 11 C 0.543 3.457 12 O -0.586 6.586 13 N -0.642 5.642 14 C 0.111 3.889 15 C -0.077 4.077 16 C 0.115 3.885 17 C -0.092 4.092 18 C 0.147 3.853 19 N -0.608 5.608 20 C -0.261 4.261 21 H 0.059 0.941 22 C -0.044 4.044 23 N -0.929 5.929 24 Si 0.959 3.041 25 H -0.270 1.270 26 H -0.289 1.289 27 H -0.294 1.294 28 C 0.181 3.819 29 C -0.110 4.110 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.188 0.812 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.204 0.796 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.048 0.952 47 H 0.019 0.981 48 H 0.250 0.750 49 H 0.047 0.953 50 H 0.007 0.993 51 H 0.056 0.944 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.650 -12.973 15.336 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.107 0.893 4 C -0.051 4.051 5 C -0.256 4.256 6 C -0.143 4.143 7 N -0.159 5.159 8 N -0.163 5.163 9 C -0.048 4.048 10 C -0.079 4.079 11 C 0.335 3.665 12 O -0.467 6.467 13 N -0.375 5.375 14 C -0.011 4.011 15 C -0.077 4.077 16 C -0.007 4.007 17 C -0.131 4.131 18 C 0.022 3.978 19 N -0.331 5.331 20 C -0.392 4.392 21 H 0.077 0.923 22 C -0.240 4.240 23 N -0.575 5.575 24 Si 0.788 3.212 25 H -0.194 1.194 26 H -0.216 1.216 27 H -0.221 1.221 28 C 0.055 3.945 29 C -0.149 4.149 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.205 0.795 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.221 0.779 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.037 0.963 48 H 0.059 0.941 49 H 0.065 0.935 50 H 0.025 0.975 51 H 0.075 0.925 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.878 -12.747 16.577 25.097 hybrid contribution 0.908 0.328 -1.440 1.734 sum -12.970 -12.419 15.137 23.485 Atomic orbital electron populations 1.21664 0.91347 1.02931 1.02715 1.21203 0.98784 1.00295 0.90959 0.89256 1.19558 1.00432 0.97206 0.87911 1.19988 0.97529 1.05212 1.02839 1.24091 1.00655 0.96265 0.93312 1.77319 0.95553 1.20357 1.22680 1.48816 1.15861 1.28121 1.23526 1.22182 0.87975 1.04595 0.89999 1.22805 1.00082 0.95747 0.89263 1.20771 0.75512 0.86486 0.83741 1.90651 1.56808 1.15447 1.83757 1.49800 1.61261 1.11046 1.15428 1.23067 0.96331 0.97116 0.84631 1.21497 0.94940 0.94999 0.96311 1.23139 0.98351 0.81974 0.97266 1.21516 0.94874 0.97332 0.99424 1.20974 0.98481 0.91367 0.87027 1.44242 1.11994 1.59307 1.17572 1.19436 0.87855 1.05377 1.26496 0.92328 1.25767 0.98656 0.96311 1.03260 1.70156 1.23451 1.22394 1.41500 0.85339 0.79610 0.77560 0.78706 1.19406 1.21617 1.22090 1.20549 0.85868 0.92041 0.96042 1.21851 1.01380 0.96878 0.94824 0.91676 0.90296 0.92685 0.90488 0.91902 0.79490 0.89657 0.89488 0.86606 0.77945 0.91192 0.88421 0.88156 0.90367 0.91577 0.92348 0.93348 0.96327 0.94129 0.93460 0.97540 0.92522 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.74 71.98 0.63 -1.53 16 2 C -0.09 -1.89 2.62 -11.54 -0.03 -1.92 16 3 H 0.09 1.87 7.52 -2.39 -0.02 1.85 16 4 C -0.01 -0.24 4.79 29.85 0.14 -0.09 16 5 C -0.24 -4.58 4.82 -20.14 -0.10 -4.67 16 6 C 0.04 0.90 11.96 85.24 1.02 1.92 16 7 N -0.34 -7.88 12.58 -57.03 -0.72 -8.60 16 8 N -0.38 -6.39 4.01 -369.57 -1.48 -7.87 16 9 C 0.09 0.71 11.47 127.77 1.47 2.18 16 10 C 0.07 1.01 10.18 83.54 0.85 1.86 16 11 C 0.54 14.79 7.03 87.66 0.62 15.41 16 12 O -0.59 -19.90 17.22 -3.04 -0.05 -19.95 16 13 N -0.64 -16.73 3.46 -858.56 -2.97 -19.70 16 14 C 0.11 2.83 7.76 83.22 0.65 3.48 16 15 C -0.08 -2.17 0.83 -52.61 -0.04 -2.22 16 16 C 0.12 2.89 7.17 83.32 0.60 3.49 16 17 C -0.09 -2.92 5.25 30.56 0.16 -2.76 16 18 C 0.15 5.76 6.41 86.42 0.55 6.31 16 19 N -0.61 -28.88 2.94 -698.64 -2.05 -30.93 16 20 C -0.26 -13.97 9.52 84.04 0.80 -13.17 16 21 H 0.06 3.12 7.88 -2.91 -0.02 3.10 16 22 C -0.04 -2.39 4.88 84.86 0.41 -1.97 16 23 N -0.93 -53.30 11.41 21.65 0.25 -53.05 16 24 Si 0.96 44.08 29.59 68.60 2.03 46.11 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 28 C 0.18 7.93 5.25 86.42 0.45 8.38 16 29 C -0.11 -3.56 5.31 30.57 0.16 -3.40 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.13 6.76 -2.38 -0.02 1.11 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.54 8.02 -2.39 -0.02 1.52 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.19 3.51 8.06 -2.91 -0.02 3.48 16 36 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.12 0.20 8.14 -2.38 -0.02 0.18 16 39 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 41 H 0.10 2.18 8.09 -2.39 -0.02 2.16 16 42 H 0.10 2.25 8.06 -2.38 -0.02 2.23 16 43 H 0.08 2.01 7.20 -2.39 -0.02 2.00 16 44 H 0.07 1.92 7.95 -2.39 -0.02 1.90 16 45 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 46 H 0.05 1.92 7.92 -2.39 -0.02 1.91 16 47 H 0.02 0.73 7.60 -2.39 -0.02 0.71 16 48 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 49 H 0.05 2.41 6.21 -2.39 -0.01 2.40 16 50 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 51 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.08 2.18 8.10 -2.39 -0.02 2.16 16 Total: -1.00 -71.80 413.66 4.23 -67.58 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.89 Total: 15.12 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 8.34 Total: 11.30 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -6.98 Total: -120.16 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.05 Total: -19.95 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -71.80 4.23 -67.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050716884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.591 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds