Wall clock time and date at job start Wed Apr 1 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47354 * 2 1 4 4 C 1.50700 * 109.46865 * 240.00504 * 2 1 3 5 5 O 1.21283 * 120.00322 * 332.60978 * 4 2 1 6 6 N 1.34779 * 120.00063 * 152.61049 * 4 2 1 7 7 C 1.47026 * 125.64581 * 4.56070 * 6 4 2 8 8 C 1.54315 * 107.27403 * 180.96640 * 7 6 4 9 9 C 1.55156 * 102.86271 * 22.52600 * 8 7 6 10 10 H 1.09005 * 111.00777 * 82.37787 * 9 8 7 11 11 N 1.46905 * 111.00648 * 206.22738 * 9 8 7 12 12 C 1.46903 * 110.99666 * 295.25251 * 11 9 8 13 13 C 1.53240 * 109.33573 * 172.74530 * 12 11 9 14 14 N 1.47075 * 108.52445 * 53.82705 * 13 12 11 15 15 C 1.36933 * 120.88232 * 128.83589 * 14 13 12 16 16 H 1.08009 * 120.00161 * 206.98998 * 15 14 13 17 17 C 1.38814 * 120.00109 * 26.98586 * 15 14 13 18 18 N 1.31622 * 119.99762 * 13.25991 * 17 15 14 19 19 Si 1.86802 * 120.00208 * 193.26095 * 17 15 14 20 20 H 1.48502 * 109.46944 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47220 * 119.99960 * 19 17 15 22 22 H 1.48494 * 109.47290 * 240.00142 * 19 17 15 23 23 C 1.47080 * 118.23813 * 308.81352 * 14 13 12 24 24 C 1.46892 * 111.00065 * 170.94681 * 11 9 8 25 25 C 1.47423 * 125.64911 * 184.86534 * 6 4 2 26 26 N 1.46497 * 109.47422 * 120.00275 * 2 1 3 27 27 C 1.36349 * 125.63548 * 60.26278 * 26 2 1 28 28 C 1.34845 * 108.21687 * 180.14622 * 27 26 2 29 29 C 1.40882 * 107.41858 * 359.63455 * 28 27 26 30 30 C 1.34843 * 107.41845 * 0.22689 * 29 28 27 31 31 H 1.09000 * 109.47154 * 295.61185 * 1 2 3 32 32 H 1.09000 * 109.47707 * 55.61302 * 1 2 3 33 33 H 1.09002 * 109.47608 * 175.61688 * 1 2 3 34 34 H 1.08992 * 109.88395 * 300.51313 * 7 6 4 35 35 H 1.08997 * 109.87812 * 61.68075 * 7 6 4 36 36 H 1.08995 * 110.92679 * 264.11109 * 8 7 6 37 37 H 1.08994 * 110.58979 * 140.78541 * 8 7 6 38 38 H 1.08995 * 109.48988 * 292.70051 * 12 11 9 39 39 H 1.08994 * 109.49284 * 52.78377 * 12 11 9 40 40 H 1.08997 * 109.62642 * 294.11626 * 13 12 11 41 41 H 1.09001 * 109.78601 * 173.63275 * 13 12 11 42 42 H 0.96999 * 119.99272 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.62840 * 291.47938 * 23 14 13 44 44 H 1.09002 * 109.79175 * 170.98338 * 23 14 13 45 45 H 1.08998 * 109.49775 * 307.21694 * 24 11 9 46 46 H 1.09001 * 109.49679 * 67.29732 * 24 11 9 47 47 H 1.08995 * 110.36663 * 274.67601 * 25 6 4 48 48 H 1.09004 * 110.36549 * 36.88966 * 25 6 4 49 49 H 1.08004 * 125.88907 * 0.02562 * 27 26 2 50 50 H 1.08003 * 126.28998 * 179.89723 * 28 27 26 51 51 H 1.08007 * 126.29391 * 180.26541 * 29 28 27 52 52 H 1.08009 * 125.89220 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 1.3551 -1.5700 -1.7534 6 7 3.2339 -0.3902 -1.7501 7 6 4.1939 0.5590 -1.1677 8 6 5.4093 0.6218 -2.1165 9 6 4.8175 0.1417 -3.4681 10 1 4.3142 0.9581 -3.9863 11 7 5.8579 -0.4553 -4.3161 12 6 6.8619 0.5457 -4.7009 13 6 8.0184 -0.1489 -5.4278 14 7 7.4655 -0.9350 -6.5411 15 6 7.9672 -0.8074 -7.8088 16 1 7.3377 -1.0133 -8.6620 17 6 9.2847 -0.4133 -7.9975 18 7 10.1236 -0.4142 -6.9832 19 14 9.8673 0.1185 -9.6908 20 1 8.7390 0.0311 -10.6524 21 1 10.3567 1.5192 -9.6287 22 1 10.9690 -0.7714 -10.1374 23 6 6.3598 -1.8623 -6.2566 24 6 5.2686 -1.1002 -5.4970 25 6 3.8009 -0.9292 -2.9997 26 7 2.0183 -0.6906 1.1961 27 6 1.7650 -1.9901 1.5222 28 6 2.3800 -2.2588 2.6918 29 6 3.0441 -1.0848 3.0985 30 6 2.8055 -0.1419 2.1646 31 1 -0.3633 0.4442 0.9267 32 1 -0.3634 0.5804 -0.8480 33 1 -0.3634 -1.0246 -0.0785 34 1 3.7359 1.5444 -1.0832 35 1 4.5108 0.2097 -0.1851 36 1 6.1998 -0.0497 -1.7815 37 1 5.7790 1.6438 -2.1987 38 1 6.4062 1.2821 -5.3627 39 1 7.2401 1.0434 -3.8079 40 1 8.5408 -0.8102 -4.7365 41 1 8.7119 0.5973 -5.8154 42 1 11.0443 -0.1392 -7.1152 43 1 6.7228 -2.6883 -5.6450 44 1 5.9532 -2.2495 -7.1909 45 1 4.4913 -1.7961 -5.1816 46 1 4.8351 -0.3409 -6.1479 47 1 4.3072 -1.8754 -2.8094 48 1 3.0170 -1.0624 -3.7454 49 1 1.1721 -2.6838 0.9445 50 1 2.3693 -3.2020 3.2177 51 1 3.6362 -0.9626 3.9935 52 1 3.1747 0.8731 2.1807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052013858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:28 Heat of formation + Delta-G solvation = 65.431325 kcal Electronic energy + Delta-G solvation = -31174.896819 eV Core-core repulsion = 27176.606016 eV Total energy + Delta-G solvation = -3998.290803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.70090 -40.18522 -38.64897 -36.95270 -34.53057 -34.16591 -31.75711 -30.45171 -30.20665 -29.65203 -28.99459 -28.61026 -26.33654 -24.82444 -23.53456 -22.87708 -22.17832 -20.81072 -20.73112 -20.38042 -19.25185 -19.17773 -17.97855 -17.36623 -17.15806 -16.37237 -15.64347 -15.07737 -14.85092 -14.66556 -14.38321 -14.19061 -14.07166 -13.90952 -13.71747 -13.49402 -13.41391 -13.19300 -13.17605 -12.72278 -12.64952 -12.57008 -12.50986 -12.37000 -12.28030 -12.01654 -11.84184 -11.38018 -11.28087 -11.05481 -10.97661 -10.78976 -10.45780 -10.35267 -10.31730 -10.05969 -9.78100 -9.64150 -8.95660 -8.84457 -8.55153 -8.36570 -7.95808 -6.68974 -5.80244 -3.23636 1.79754 2.03542 2.54568 2.87772 2.95161 3.34591 3.42449 3.44402 3.88794 4.13664 4.15841 4.41156 4.46908 4.49525 4.53317 4.71724 4.82277 5.03858 5.11056 5.16316 5.18355 5.19486 5.30469 5.37751 5.37801 5.41064 5.45395 5.60491 5.64267 5.72796 5.76041 5.81877 5.87232 5.91454 6.08304 6.09393 6.10433 6.11447 6.19627 6.28587 6.48494 6.64900 6.77801 6.89261 6.98591 7.07946 7.13204 7.21587 7.49828 7.59082 7.67859 7.70931 7.78242 8.41600 9.19240 9.81518 10.39539 11.28132 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.002120 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.373060 B =13207.416042 C =13601.441597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 H 0.113 0.887 4 C 0.522 3.478 5 O -0.526 6.526 6 N -0.607 5.607 7 C 0.098 3.902 8 C -0.121 4.121 9 C 0.069 3.931 10 H 0.051 0.949 11 N -0.520 5.520 12 C 0.037 3.963 13 C 0.177 3.823 14 N -0.596 5.596 15 C -0.249 4.249 16 H 0.066 0.934 17 C -0.001 4.001 18 N -0.906 5.906 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.149 3.851 24 C 0.041 3.959 25 C 0.115 3.885 26 N -0.439 5.439 27 C -0.004 4.004 28 C -0.201 4.201 29 C -0.196 4.196 30 C -0.019 4.019 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.025 0.975 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.094 0.906 42 H 0.253 0.747 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.029 0.971 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.160 0.840 50 H 0.135 0.865 51 H 0.136 0.864 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.470 4.696 18.441 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 H 0.131 0.869 4 C 0.307 3.693 5 O -0.401 6.401 6 N -0.341 5.341 7 C -0.025 4.025 8 C -0.160 4.160 9 C -0.040 4.040 10 H 0.069 0.931 11 N -0.246 5.246 12 C -0.092 4.092 13 C 0.051 3.949 14 N -0.319 5.319 15 C -0.378 4.378 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.551 5.551 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.022 3.978 24 C -0.088 4.088 25 C -0.007 4.007 26 N -0.118 5.118 27 C -0.133 4.133 28 C -0.226 4.226 29 C -0.221 4.221 30 C -0.147 4.147 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.177 0.823 50 H 0.153 0.847 51 H 0.153 0.847 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.612 4.062 18.106 24.906 hybrid contribution 0.087 1.011 -1.281 1.634 sum -16.525 5.073 16.825 24.123 Atomic orbital electron populations 1.22004 0.90800 1.04799 1.03283 1.21447 0.97440 0.97212 0.82284 0.86878 1.20204 0.80201 0.83483 0.85391 1.90737 1.56094 1.31319 1.61918 1.48465 1.16495 1.43973 1.25211 1.22179 0.89835 0.92424 0.98034 1.22685 0.96737 1.02862 0.93674 1.22743 0.92364 0.94856 0.94083 0.93131 1.62037 1.12320 1.31072 1.19137 1.22930 0.94806 0.93157 0.98339 1.20930 0.91129 0.94973 0.87908 1.44126 1.38134 1.43806 1.05876 1.19258 0.93256 1.41724 0.83590 0.91599 1.25064 0.95508 1.01983 0.97307 1.69989 1.03969 1.51434 1.29744 0.86185 0.78467 0.78030 0.83875 1.20346 1.21616 1.21657 1.20967 0.88524 0.91856 0.96427 1.22680 0.97738 0.97674 0.90718 1.22306 0.95861 0.97680 0.84860 1.43949 1.40262 1.10465 1.17133 1.21872 1.06394 0.85696 0.99292 1.20911 1.04450 0.99427 0.97763 1.20902 1.06228 0.93805 1.01118 1.21839 1.01420 0.99904 0.91526 0.90799 0.90340 0.90281 0.91463 0.90836 0.88909 0.89909 0.95668 0.91932 0.95617 0.88754 0.93646 0.95598 0.92568 0.91895 0.95297 0.89916 0.90524 0.82299 0.84719 0.84662 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.84 37.15 0.33 -0.79 16 2 C 0.12 1.03 2.86 -69.09 -0.20 0.84 16 3 H 0.11 0.68 7.10 -51.93 -0.37 0.32 16 4 C 0.52 6.15 6.88 -10.98 -0.08 6.07 16 5 O -0.53 -7.95 16.33 5.56 0.09 -7.86 16 6 N -0.61 -6.89 3.33 -170.53 -0.57 -7.46 16 7 C 0.10 0.87 6.28 -3.07 -0.02 0.85 16 8 C -0.12 -1.27 5.48 -24.90 -0.14 -1.40 16 9 C 0.07 0.90 2.71 -65.56 -0.18 0.72 16 10 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 11 N -0.52 -8.61 4.53 -223.78 -1.01 -9.62 16 12 C 0.04 0.67 5.50 -3.70 -0.02 0.65 16 13 C 0.18 4.13 5.41 -3.60 -0.02 4.11 16 14 N -0.60 -14.85 3.04 -172.01 -0.52 -15.37 16 15 C -0.25 -6.76 9.65 -15.06 -0.15 -6.91 16 16 H 0.07 1.77 7.86 -52.48 -0.41 1.35 16 17 C 0.00 -0.02 5.03 -17.43 -0.09 -0.11 16 18 N -0.91 -25.93 10.94 55.49 0.61 -25.32 16 19 Si 0.90 21.50 29.57 -169.99 -5.03 16.47 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.15 3.13 6.69 -3.60 -0.02 3.10 16 24 C 0.04 0.72 5.45 -3.70 -0.02 0.70 16 25 C 0.12 1.49 5.16 -2.53 -0.01 1.48 16 26 N -0.44 -4.11 2.61 -111.26 -0.29 -4.40 16 27 C 0.00 -0.04 10.59 -16.75 -0.18 -0.21 16 28 C -0.20 -2.05 10.86 -39.79 -0.43 -2.48 16 29 C -0.20 -1.84 10.86 -39.79 -0.43 -2.27 16 30 C -0.02 -0.16 11.39 -16.75 -0.19 -0.35 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.71 7.60 -51.93 -0.39 0.31 16 34 H 0.07 0.44 7.68 -51.93 -0.40 0.05 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.76 7.94 -51.93 -0.41 0.35 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 1.00 6.98 -51.93 -0.36 0.64 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 2.46 6.01 -51.93 -0.31 2.15 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 45 H 0.06 0.97 6.70 -51.93 -0.35 0.62 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.08 1.04 7.79 -51.93 -0.40 0.64 16 49 H 0.16 1.65 8.06 -52.48 -0.42 1.22 16 50 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 51 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 52 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 406.90 15.07 6.13 6.13 Total: -1.00 -31.80 406.90 -11.31 -43.11 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.88 Total: 0.33 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.84 Total: 3.98 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -1.79 Total: -62.17 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.09 Total: -7.86 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.80 -11.31 -43.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052013858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.544 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds