Wall clock time and date at job start Wed Apr 1 2020 04:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47236 * 2 1 4 4 C 1.50699 * 109.46735 * 240.00086 * 2 1 3 5 5 O 1.21286 * 120.00202 * 252.42143 * 4 2 1 6 6 N 1.34774 * 120.00079 * 72.43050 * 4 2 1 7 7 C 1.46938 * 120.70161 * 353.94085 * 6 4 2 8 8 C 1.53183 * 108.92390 * 125.84992 * 7 6 4 9 9 C 1.53168 * 109.27151 * 55.23541 * 8 7 6 10 10 C 1.52239 * 109.65946 * 299.82203 * 9 8 7 11 11 C 1.54504 * 110.25159 * 297.05529 * 10 9 8 12 12 C 1.55025 * 101.52044 * 276.23180 * 11 10 9 13 13 N 1.47482 * 104.90634 * 323.64583 * 12 11 10 14 14 C 1.36938 * 125.65992 * 204.04627 * 13 12 11 15 15 H 1.07997 * 119.99881 * 151.11038 * 14 13 12 16 16 C 1.38813 * 120.00077 * 331.10247 * 14 13 12 17 17 N 1.31619 * 119.99568 * 158.32478 * 16 14 13 18 18 Si 1.86800 * 119.99845 * 338.32528 * 16 14 13 19 19 H 1.48492 * 109.47219 * 87.55272 * 18 16 14 20 20 H 1.48507 * 109.46683 * 207.54968 * 18 16 14 21 21 H 1.48497 * 109.47403 * 327.54362 * 18 16 14 22 22 C 1.47188 * 108.67294 * 24.00399 * 13 12 11 23 23 C 1.47084 * 120.70401 * 173.95944 * 6 4 2 24 24 C 1.50698 * 109.47099 * 120.00772 * 2 1 3 25 25 C 1.35315 * 126.13319 * 85.02251 * 24 2 1 26 26 C 1.39870 * 107.92021 * 179.97438 * 25 24 2 27 27 N 1.30837 * 108.20677 * 0.02562 * 26 25 24 28 28 N 1.34953 * 126.12325 * 264.70878 * 24 2 1 29 29 C 1.46501 * 126.03651 * 0.03914 * 28 24 2 30 30 H 1.08994 * 109.46780 * 63.28219 * 1 2 3 31 31 H 1.09004 * 109.47067 * 183.28014 * 1 2 3 32 32 H 1.08999 * 109.46495 * 303.27873 * 1 2 3 33 33 H 1.09002 * 109.55803 * 6.01530 * 7 6 4 34 34 H 1.08998 * 109.65592 * 245.74419 * 7 6 4 35 35 H 1.09003 * 109.50361 * 295.30031 * 8 7 6 36 36 H 1.09000 * 109.54001 * 175.19744 * 8 7 6 37 37 H 1.08997 * 109.43692 * 179.76291 * 9 8 7 38 38 H 1.08995 * 109.40664 * 59.86088 * 9 8 7 39 39 H 1.08996 * 111.01075 * 34.29141 * 11 10 9 40 40 H 1.08998 * 111.01288 * 158.17238 * 11 10 9 41 41 H 1.08999 * 110.35444 * 204.78505 * 12 11 10 42 42 H 1.09010 * 110.44341 * 82.54930 * 12 11 10 43 43 H 0.97004 * 119.99693 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.90820 * 239.12700 * 22 13 12 45 45 H 1.09004 * 109.90844 * 117.86369 * 22 13 12 46 46 H 1.08999 * 109.57613 * 112.61932 * 23 6 4 47 47 H 1.09002 * 109.57452 * 352.22683 * 23 6 4 48 48 H 1.08002 * 126.03657 * 359.94154 * 25 24 2 49 49 H 1.08001 * 125.89286 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.46779 * 89.99575 * 29 28 24 51 51 H 1.08997 * 109.47147 * 209.99758 * 29 28 24 52 52 H 1.08996 * 109.47019 * 330.00126 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5335 -1.8106 -1.1335 6 7 1.9247 -0.1231 -2.4388 7 6 1.2036 1.1477 -2.5937 8 6 2.1247 2.1611 -3.2800 9 6 2.6274 1.5731 -4.6019 10 6 3.4021 0.2911 -4.3304 11 6 4.6546 0.5934 -3.4777 12 6 5.6697 1.0334 -4.5637 13 7 5.3750 0.1770 -5.7276 14 6 6.2539 -0.1393 -6.7290 15 1 6.1567 -1.0765 -7.2567 16 6 7.2696 0.7449 -7.0659 17 7 8.3423 0.3075 -7.6907 18 14 7.1140 2.5552 -6.6324 19 1 7.6379 2.7828 -5.2617 20 1 7.8950 3.3651 -7.6017 21 1 5.6855 2.9569 -6.6895 22 6 3.9797 -0.2821 -5.6337 23 6 2.5263 -0.7409 -3.6303 24 6 2.0324 -0.7106 1.2303 25 6 2.2090 -2.0454 1.3647 26 6 2.6882 -2.2884 2.6561 27 7 2.7949 -1.1407 3.2751 28 7 2.3924 -0.1290 2.3937 29 6 2.3633 1.3065 2.6849 30 1 -0.3633 0.4620 -0.9179 31 1 -0.3633 -1.0260 0.0588 32 1 -0.3632 0.5639 0.8592 33 1 0.9129 1.5242 -1.6129 34 1 0.3134 0.9922 -3.2032 35 1 2.9738 2.3782 -2.6320 36 1 1.5729 3.0803 -3.4770 37 1 3.2799 2.2939 -5.0946 38 1 1.7769 1.3533 -5.2472 39 1 4.4615 1.4019 -2.7727 40 1 4.9998 -0.3011 -2.9593 41 1 6.6901 0.8663 -4.2187 42 1 5.5235 2.0831 -4.8186 43 1 9.0523 0.9253 -7.9258 44 1 3.9483 -1.3713 -5.6062 45 1 3.4094 0.0868 -6.4863 46 1 1.7387 -1.0712 -4.3075 47 1 3.1352 -1.5941 -3.3313 48 1 2.0138 -2.7914 0.6084 49 1 2.9278 -3.2563 3.0708 50 1 1.3913 1.5733 3.1001 51 1 3.1447 1.5469 3.4057 52 1 2.5319 1.8672 1.7655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054133382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:09 Heat of formation + Delta-G solvation = 79.215727 kcal Electronic energy + Delta-G solvation = -32259.999767 eV Core-core repulsion = 28262.306700 eV Total energy + Delta-G solvation = -3997.693066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.62512 -40.54049 -38.73131 -36.17623 -34.64990 -33.25327 -32.91727 -32.05804 -30.77107 -29.25188 -28.91752 -26.90272 -26.25222 -26.05314 -24.38444 -23.34913 -22.45477 -21.39809 -20.86144 -20.28156 -19.02443 -18.41033 -17.51564 -16.89202 -16.47379 -15.96905 -15.81004 -15.46563 -15.35262 -14.91832 -14.59733 -14.20985 -14.03256 -13.86292 -13.74551 -13.63443 -13.50033 -13.20632 -12.97510 -12.90595 -12.68897 -12.61853 -12.43502 -12.30241 -12.04210 -11.83106 -11.69792 -11.59937 -11.27443 -11.12947 -10.91905 -10.76666 -10.64525 -10.42768 -10.22355 -10.06668 -9.96694 -9.71472 -9.53817 -9.38993 -8.68325 -8.59241 -8.51463 -6.91242 -5.97596 -3.32869 1.68831 2.27410 2.46838 2.77351 2.93776 3.34167 3.45156 3.49225 4.03020 4.18120 4.35364 4.49061 4.54371 4.63639 4.65413 4.77595 4.83141 4.86720 4.88425 4.99754 5.00863 5.10421 5.12108 5.17990 5.22280 5.25675 5.40017 5.44194 5.58906 5.61676 5.68085 5.69812 5.71630 5.73703 5.78578 5.90971 5.95652 6.05380 6.18993 6.21358 6.29618 6.35665 6.46838 6.58664 6.63857 6.69348 6.77895 6.80642 6.85196 7.27944 7.59661 7.83408 8.05041 8.33120 8.85362 9.68230 10.22832 11.18938 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002919 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.280908 B = 9590.036922 C = 9928.232745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 H 0.101 0.899 4 C 0.525 3.475 5 O -0.520 6.520 6 N -0.604 5.604 7 C 0.102 3.898 8 C -0.139 4.139 9 C -0.103 4.103 10 C -0.085 4.085 11 C -0.118 4.118 12 C 0.119 3.881 13 N -0.605 5.605 14 C -0.244 4.244 15 H 0.086 0.914 16 C 0.029 3.971 17 N -0.906 5.906 18 Si 0.882 3.118 19 H -0.286 1.286 20 H -0.302 1.302 21 H -0.275 1.275 22 C 0.146 3.854 23 C 0.132 3.868 24 C 0.082 3.918 25 C -0.228 4.228 26 C 0.038 3.962 27 N -0.298 5.298 28 N -0.375 5.375 29 C 0.099 3.901 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.020 0.980 43 H 0.263 0.737 44 H 0.035 0.965 45 H 0.034 0.966 46 H 0.068 0.932 47 H 0.096 0.904 48 H 0.161 0.839 49 H 0.182 0.818 50 H 0.073 0.927 51 H 0.089 0.911 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.438 4.262 18.051 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 H 0.119 0.881 4 C 0.311 3.689 5 O -0.396 6.396 6 N -0.338 5.338 7 C -0.020 4.020 8 C -0.177 4.177 9 C -0.141 4.141 10 C -0.086 4.086 11 C -0.157 4.157 12 C -0.006 4.006 13 N -0.332 5.332 14 C -0.371 4.371 15 H 0.104 0.896 16 C -0.171 4.171 17 N -0.548 5.548 18 Si 0.712 3.288 19 H -0.213 1.213 20 H -0.229 1.229 21 H -0.200 1.200 22 C 0.020 3.980 23 C 0.010 3.990 24 C -0.044 4.044 25 C -0.256 4.256 26 C -0.147 4.147 27 N -0.120 5.120 28 N -0.159 5.159 29 C -0.042 4.042 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.114 0.886 48 H 0.178 0.822 49 H 0.199 0.801 50 H 0.091 0.909 51 H 0.108 0.892 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.619 4.395 19.067 27.709 hybrid contribution -0.041 0.960 -0.651 1.161 sum -19.660 5.356 18.416 27.466 Atomic orbital electron populations 1.21891 0.91056 1.03994 1.03128 1.19745 0.97979 0.99560 0.89503 0.88071 1.19964 0.78967 0.86138 0.83810 1.90713 1.44028 1.19553 1.85262 1.48039 1.54657 1.23457 1.07614 1.21910 0.94915 0.83840 1.01382 1.22034 0.99734 0.97885 0.98034 1.21383 0.99615 0.96814 0.96266 1.21376 0.95132 0.95208 0.96927 1.22759 0.95064 1.00906 0.96946 1.21891 0.97493 0.93818 0.87397 1.44728 1.07408 1.58310 1.22777 1.18581 1.06108 1.01431 1.10999 0.89599 1.25261 0.96436 0.97800 0.97563 1.69846 1.06521 1.34659 1.43801 0.86851 0.77491 0.87570 0.76900 1.21328 1.22932 1.20044 1.21270 0.86613 0.97100 0.92968 1.21553 0.96483 0.95965 0.85015 1.20273 1.02335 0.93645 0.88184 1.21605 1.10796 0.95188 0.98060 1.23912 0.99782 0.97009 0.93980 1.77337 1.22587 0.95836 1.16194 1.48402 1.51475 1.06665 1.09382 1.21814 1.03652 0.75675 1.03084 0.90666 0.91059 0.91382 0.89844 0.90914 0.91147 0.90734 0.90973 0.91691 0.91949 0.91336 0.92931 0.96253 0.92675 0.94746 0.94849 0.91417 0.88589 0.82192 0.80076 0.90856 0.89238 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.76 37.16 0.33 -0.58 16 2 C -0.04 -0.40 2.07 -92.92 -0.19 -0.59 16 3 H 0.10 0.70 6.12 -51.93 -0.32 0.39 16 4 C 0.53 6.27 6.93 -10.99 -0.08 6.20 16 5 O -0.52 -8.14 12.94 5.55 0.07 -8.07 16 6 N -0.60 -6.53 2.83 -173.12 -0.49 -7.02 16 7 C 0.10 0.77 5.24 -3.71 -0.02 0.75 16 8 C -0.14 -1.26 5.90 -26.55 -0.16 -1.41 16 9 C -0.10 -1.30 4.55 -27.03 -0.12 -1.42 16 10 C -0.09 -1.27 0.55 -154.09 -0.09 -1.36 16 11 C -0.12 -2.01 5.73 -24.87 -0.14 -2.15 16 12 C 0.12 2.58 4.57 -2.44 -0.01 2.57 16 13 N -0.61 -14.56 3.05 -170.24 -0.52 -15.08 16 14 C -0.24 -6.95 10.51 -15.06 -0.16 -7.11 16 15 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 16 C 0.03 0.85 5.43 -17.43 -0.09 0.75 16 17 N -0.91 -28.09 13.97 55.49 0.78 -27.31 16 18 Si 0.88 22.58 24.55 -169.99 -4.17 18.41 16 19 H -0.29 -7.15 7.05 56.52 0.40 -6.75 16 20 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 21 H -0.27 -6.84 6.90 56.52 0.39 -6.45 16 22 C 0.15 2.80 6.43 -3.33 -0.02 2.78 16 23 C 0.13 1.72 4.96 -4.04 -0.02 1.70 16 24 C 0.08 0.94 5.80 -82.26 -0.48 0.46 16 25 C -0.23 -2.91 9.23 -40.01 -0.37 -3.28 16 26 C 0.04 0.46 12.03 -17.36 -0.21 0.25 16 27 N -0.30 -3.90 12.58 30.62 0.39 -3.52 16 28 N -0.38 -4.19 4.01 -63.88 -0.26 -4.44 16 29 C 0.10 0.66 11.27 59.85 0.67 1.34 16 30 H 0.07 0.36 5.84 -51.93 -0.30 0.06 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.43 4.62 -51.93 -0.24 0.19 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.70 6.23 -51.93 -0.32 0.38 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 1.10 7.49 -51.93 -0.39 0.71 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.93 6.00 -51.93 -0.31 0.62 16 40 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 41 H 0.05 1.24 7.83 -51.93 -0.41 0.83 16 42 H 0.02 0.44 5.08 -51.92 -0.26 0.17 16 43 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.03 0.66 7.80 -51.93 -0.40 0.26 16 45 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.10 1.48 6.92 -51.93 -0.36 1.12 16 48 H 0.16 2.16 6.43 -52.49 -0.34 1.82 16 49 H 0.18 1.63 8.06 -52.49 -0.42 1.20 16 50 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 52 H 0.08 0.40 6.97 -51.93 -0.36 0.04 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -35.75 387.56 -7.74 -43.49 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.21 Total: -1.22 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.16 Total: -1.08 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.11 Total: -57.37 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.07 Total: -8.07 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.17 Total: 18.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.75 -7.74 -43.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054133382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.706 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds