Wall clock time and date at job start Wed Apr 1 2020 04:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47236 * 2 1 4 4 C 1.50699 * 109.46735 * 240.00086 * 2 1 3 5 5 O 1.21286 * 120.00202 * 252.42143 * 4 2 1 6 6 N 1.34774 * 120.00079 * 72.43050 * 4 2 1 7 7 C 1.46938 * 120.70161 * 353.94085 * 6 4 2 8 8 C 1.53183 * 108.92390 * 125.84992 * 7 6 4 9 9 C 1.53168 * 109.27151 * 55.23541 * 8 7 6 10 10 C 1.52239 * 109.65946 * 299.82203 * 9 8 7 11 11 C 1.54504 * 110.25159 * 297.05529 * 10 9 8 12 12 C 1.55025 * 101.52044 * 276.23180 * 11 10 9 13 13 N 1.47482 * 104.90634 * 323.64583 * 12 11 10 14 14 C 1.36938 * 125.65992 * 204.04627 * 13 12 11 15 15 H 1.07997 * 119.99881 * 151.11038 * 14 13 12 16 16 C 1.38813 * 120.00077 * 331.10247 * 14 13 12 17 17 N 1.31619 * 119.99568 * 158.32478 * 16 14 13 18 18 Si 1.86800 * 119.99845 * 338.32528 * 16 14 13 19 19 H 1.48492 * 109.47219 * 87.55272 * 18 16 14 20 20 H 1.48507 * 109.46683 * 207.54968 * 18 16 14 21 21 H 1.48497 * 109.47403 * 327.54362 * 18 16 14 22 22 C 1.47188 * 108.67294 * 24.00399 * 13 12 11 23 23 C 1.47084 * 120.70401 * 173.95944 * 6 4 2 24 24 C 1.50698 * 109.47099 * 120.00772 * 2 1 3 25 25 C 1.35315 * 126.13319 * 85.02251 * 24 2 1 26 26 C 1.39870 * 107.92021 * 179.97438 * 25 24 2 27 27 N 1.30837 * 108.20677 * 0.02562 * 26 25 24 28 28 N 1.34953 * 126.12325 * 264.70878 * 24 2 1 29 29 C 1.46501 * 126.03651 * 0.03914 * 28 24 2 30 30 H 1.08994 * 109.46780 * 63.28219 * 1 2 3 31 31 H 1.09004 * 109.47067 * 183.28014 * 1 2 3 32 32 H 1.08999 * 109.46495 * 303.27873 * 1 2 3 33 33 H 1.09002 * 109.55803 * 6.01530 * 7 6 4 34 34 H 1.08998 * 109.65592 * 245.74419 * 7 6 4 35 35 H 1.09003 * 109.50361 * 295.30031 * 8 7 6 36 36 H 1.09000 * 109.54001 * 175.19744 * 8 7 6 37 37 H 1.08997 * 109.43692 * 179.76291 * 9 8 7 38 38 H 1.08995 * 109.40664 * 59.86088 * 9 8 7 39 39 H 1.08996 * 111.01075 * 34.29141 * 11 10 9 40 40 H 1.08998 * 111.01288 * 158.17238 * 11 10 9 41 41 H 1.08999 * 110.35444 * 204.78505 * 12 11 10 42 42 H 1.09010 * 110.44341 * 82.54930 * 12 11 10 43 43 H 0.97004 * 119.99693 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.90820 * 239.12700 * 22 13 12 45 45 H 1.09004 * 109.90844 * 117.86369 * 22 13 12 46 46 H 1.08999 * 109.57613 * 112.61932 * 23 6 4 47 47 H 1.09002 * 109.57452 * 352.22683 * 23 6 4 48 48 H 1.08002 * 126.03657 * 359.94154 * 25 24 2 49 49 H 1.08001 * 125.89286 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.46779 * 89.99575 * 29 28 24 51 51 H 1.08997 * 109.47147 * 209.99758 * 29 28 24 52 52 H 1.08996 * 109.47019 * 330.00126 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5335 -1.8106 -1.1335 6 7 1.9247 -0.1231 -2.4388 7 6 1.2036 1.1477 -2.5937 8 6 2.1247 2.1611 -3.2800 9 6 2.6274 1.5731 -4.6019 10 6 3.4021 0.2911 -4.3304 11 6 4.6546 0.5934 -3.4777 12 6 5.6697 1.0334 -4.5637 13 7 5.3750 0.1770 -5.7276 14 6 6.2539 -0.1393 -6.7290 15 1 6.1567 -1.0765 -7.2567 16 6 7.2696 0.7449 -7.0659 17 7 8.3423 0.3075 -7.6907 18 14 7.1140 2.5552 -6.6324 19 1 7.6379 2.7828 -5.2617 20 1 7.8950 3.3651 -7.6017 21 1 5.6855 2.9569 -6.6895 22 6 3.9797 -0.2821 -5.6337 23 6 2.5263 -0.7409 -3.6303 24 6 2.0324 -0.7106 1.2303 25 6 2.2090 -2.0454 1.3647 26 6 2.6882 -2.2884 2.6561 27 7 2.7949 -1.1407 3.2751 28 7 2.3924 -0.1290 2.3937 29 6 2.3633 1.3065 2.6849 30 1 -0.3633 0.4620 -0.9179 31 1 -0.3633 -1.0260 0.0588 32 1 -0.3632 0.5639 0.8592 33 1 0.9129 1.5242 -1.6129 34 1 0.3134 0.9922 -3.2032 35 1 2.9738 2.3782 -2.6320 36 1 1.5729 3.0803 -3.4770 37 1 3.2799 2.2939 -5.0946 38 1 1.7769 1.3533 -5.2472 39 1 4.4615 1.4019 -2.7727 40 1 4.9998 -0.3011 -2.9593 41 1 6.6901 0.8663 -4.2187 42 1 5.5235 2.0831 -4.8186 43 1 9.0523 0.9253 -7.9258 44 1 3.9483 -1.3713 -5.6062 45 1 3.4094 0.0868 -6.4863 46 1 1.7387 -1.0712 -4.3075 47 1 3.1352 -1.5941 -3.3313 48 1 2.0138 -2.7914 0.6084 49 1 2.9278 -3.2563 3.0708 50 1 1.3913 1.5733 3.1001 51 1 3.1447 1.5469 3.4057 52 1 2.5319 1.8672 1.7655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054133382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:08 Heat of formation + Delta-G solvation = 54.749671 kcal Electronic energy + Delta-G solvation = -32261.060694 eV Core-core repulsion = 28262.306700 eV Total energy + Delta-G solvation = -3998.753994 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.45998 -41.54420 -39.92455 -37.40566 -35.52914 -34.64134 -33.87291 -33.26589 -32.22093 -30.61328 -29.98714 -27.70105 -27.54736 -26.94870 -25.40940 -24.74874 -23.47953 -22.37966 -22.19612 -21.38484 -19.99522 -19.57456 -18.67491 -18.28415 -17.44096 -17.15456 -16.96405 -16.64059 -16.52252 -15.96846 -15.57515 -15.36611 -15.20194 -15.02804 -14.73455 -14.64443 -14.54477 -14.26614 -14.09328 -13.98477 -13.69562 -13.55046 -13.35345 -13.24541 -13.14093 -13.05328 -12.89974 -12.86844 -12.57313 -12.29867 -12.29099 -12.12542 -11.79437 -11.73853 -11.62452 -11.51683 -11.31739 -11.24155 -10.79440 -10.61569 -10.20728 -9.57475 -9.37433 -8.94823 -8.24544 -5.56835 0.85688 1.27721 1.34293 1.46017 1.53441 1.62810 1.90173 2.10011 2.38698 2.98701 3.29226 3.32214 3.47271 3.59087 3.73618 3.79452 3.80809 3.98445 4.07475 4.13432 4.18514 4.21196 4.35386 4.35968 4.43679 4.46170 4.57554 4.66167 4.68879 4.70615 4.75088 4.77593 4.80445 4.85173 4.88244 4.89492 4.92338 4.94165 4.97745 5.14634 5.17468 5.21351 5.24419 5.34010 5.47712 5.51960 5.55892 5.73436 5.76714 6.08052 6.11101 6.46299 6.73785 6.75395 7.19485 7.49155 8.11557 8.96241 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002919 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.280908 B = 9590.036922 C = 9928.232745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.036 4.036 3 H 0.133 0.867 4 C 0.519 3.481 5 O -0.568 6.568 6 N -0.600 5.600 7 C 0.097 3.903 8 C -0.132 4.132 9 C -0.103 4.103 10 C -0.069 4.069 11 C -0.105 4.105 12 C 0.114 3.886 13 N -0.624 5.624 14 C -0.242 4.242 15 H 0.048 0.952 16 C -0.030 4.030 17 N -0.955 5.955 18 Si 0.949 3.051 19 H -0.276 1.276 20 H -0.303 1.303 21 H -0.259 1.259 22 C 0.139 3.861 23 C 0.140 3.860 24 C 0.085 3.915 25 C -0.259 4.259 26 C 0.028 3.972 27 N -0.329 5.329 28 N -0.374 5.374 29 C 0.086 3.914 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.024 0.976 42 H 0.026 0.974 43 H 0.264 0.736 44 H 0.025 0.975 45 H 0.038 0.962 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.144 0.856 49 H 0.199 0.801 50 H 0.096 0.904 51 H 0.089 0.911 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.063 8.087 19.942 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.059 4.059 3 H 0.151 0.849 4 C 0.306 3.694 5 O -0.446 6.446 6 N -0.332 5.332 7 C -0.024 4.024 8 C -0.170 4.170 9 C -0.141 4.141 10 C -0.070 4.070 11 C -0.143 4.143 12 C -0.010 4.010 13 N -0.351 5.351 14 C -0.371 4.371 15 H 0.066 0.934 16 C -0.225 4.225 17 N -0.600 5.600 18 Si 0.777 3.223 19 H -0.202 1.202 20 H -0.231 1.231 21 H -0.183 1.183 22 C 0.015 3.985 23 C 0.017 3.983 24 C -0.043 4.043 25 C -0.288 4.288 26 C -0.156 4.156 27 N -0.151 5.151 28 N -0.158 5.158 29 C -0.054 4.054 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.056 0.944 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.161 0.839 49 H 0.216 0.784 50 H 0.115 0.885 51 H 0.108 0.892 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -23.299 8.260 20.994 32.432 hybrid contribution 1.093 -0.348 -1.275 1.715 sum -22.206 7.912 19.719 30.733 Atomic orbital electron populations 1.21926 0.88635 1.03686 1.05345 1.19851 0.99678 0.99998 0.86343 0.84893 1.20584 0.78194 0.85749 0.84837 1.90716 1.46092 1.21837 1.85972 1.48077 1.54285 1.24520 1.06341 1.22279 0.94788 0.81544 1.03767 1.22027 1.00164 0.99268 0.95522 1.21399 0.99343 0.94458 0.98895 1.21270 0.94803 0.97072 0.93896 1.22661 0.94455 1.01011 0.96133 1.21972 0.97479 0.93659 0.87915 1.44832 1.09070 1.58645 1.22578 1.18492 1.06954 1.00178 1.11488 0.93431 1.25928 0.95983 1.02231 0.98404 1.69982 1.07563 1.36098 1.46362 0.85777 0.78146 0.81508 0.76892 1.20205 1.23139 1.18336 1.21461 0.84417 0.96752 0.95905 1.21241 0.96414 0.94444 0.86230 1.20628 1.01144 0.93448 0.89078 1.21629 1.12849 0.96138 0.98178 1.24245 0.99578 0.97796 0.93942 1.77265 1.23858 0.96534 1.17446 1.48743 1.50337 1.07877 1.08845 1.22245 1.05111 0.73326 1.04713 0.88200 0.92780 0.89315 0.86367 0.88566 0.91662 0.87503 0.93413 0.89938 0.88740 0.93193 0.95736 0.95633 0.92708 0.95735 0.94383 0.89688 0.91763 0.83855 0.78445 0.88532 0.89231 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.76 71.98 0.63 -0.46 16 2 C -0.04 -0.49 2.07 -12.28 -0.03 -0.52 16 3 H 0.13 1.01 6.12 -2.39 -0.01 0.99 16 4 C 0.52 11.15 6.93 87.66 0.61 11.76 16 5 O -0.57 -17.86 12.94 -3.05 -0.04 -17.90 16 6 N -0.60 -10.79 2.83 -820.03 -2.32 -13.10 16 7 C 0.10 0.85 5.24 86.36 0.45 1.30 16 8 C -0.13 -1.59 5.90 30.71 0.18 -1.40 16 9 C -0.10 -2.19 4.55 30.40 0.14 -2.05 16 10 C -0.07 -1.94 0.55 -51.91 -0.03 -1.96 16 11 C -0.10 -3.39 5.73 31.80 0.18 -3.21 16 12 C 0.11 4.90 4.57 86.88 0.40 5.30 16 13 N -0.62 -30.64 3.05 -692.52 -2.12 -32.75 16 14 C -0.24 -14.42 10.51 84.03 0.88 -13.54 16 15 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 16 C -0.03 -1.81 5.43 84.86 0.46 -1.35 16 17 N -0.95 -61.61 13.97 21.65 0.30 -61.31 16 18 Si 0.95 47.24 24.55 68.60 1.68 48.92 16 19 H -0.28 -13.14 7.05 99.48 0.70 -12.44 16 20 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 21 H -0.26 -12.08 6.90 99.48 0.69 -11.39 16 22 C 0.14 5.37 6.43 86.46 0.56 5.93 16 23 C 0.14 3.42 4.96 86.07 0.43 3.84 16 24 C 0.09 1.79 5.80 41.40 0.24 2.03 16 25 C -0.26 -6.69 9.23 21.99 0.20 -6.49 16 26 C 0.03 0.70 12.03 85.24 1.02 1.72 16 27 N -0.33 -8.39 12.58 -57.02 -0.72 -9.11 16 28 N -0.37 -7.52 4.01 -356.03 -1.43 -8.95 16 29 C 0.09 0.82 11.27 127.77 1.44 2.26 16 30 H 0.10 0.31 5.84 -2.39 -0.01 0.30 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.12 0.29 4.62 -2.39 -0.01 0.28 16 34 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.89 6.23 -2.39 -0.01 0.88 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 1.27 7.49 -2.39 -0.02 1.26 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 2.48 6.00 -2.39 -0.01 2.47 16 40 H 0.05 1.81 7.91 -2.39 -0.02 1.79 16 41 H 0.02 1.17 7.83 -2.39 -0.02 1.15 16 42 H 0.03 1.09 5.08 -2.38 -0.01 1.08 16 43 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 44 H 0.02 0.98 7.80 -2.39 -0.02 0.96 16 45 H 0.04 1.43 7.83 -2.38 -0.02 1.42 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.06 2.01 6.92 -2.39 -0.02 2.00 16 48 H 0.14 4.12 6.43 -2.91 -0.02 4.10 16 49 H 0.20 3.70 8.06 -2.91 -0.02 3.68 16 50 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.11 0.46 6.97 -2.39 -0.02 0.45 16 Total: -1.00 -85.30 387.56 4.03 -81.26 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.90 Total: 9.77 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 7.77 Total: 3.17 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -6.28 Total: -125.22 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.04 Total: -17.90 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.68 Total: 48.92 kcal Total: -85.30 4.03 -81.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054133382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.013 kcal (2) G-P(sol) polarization free energy of solvation -85.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds