Wall clock time and date at job start Wed Apr 1 2020 05:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47479 * 2 1 4 4 C 1.53001 * 109.46791 * 120.00256 * 2 1 3 5 5 C 1.50701 * 109.47096 * 294.99788 * 4 2 1 6 6 O 1.21289 * 119.99750 * 359.97438 * 5 4 2 7 7 N 1.34770 * 120.00221 * 180.02562 * 5 4 2 8 8 C 1.46935 * 120.71401 * 359.97438 * 7 5 4 9 9 C 1.53180 * 108.93893 * 234.23427 * 8 7 5 10 10 C 1.53189 * 109.28013 * 304.68842 * 9 8 7 11 11 C 1.52073 * 109.67596 * 59.95692 * 10 9 8 12 12 C 1.54577 * 110.52308 * 177.48528 * 11 10 9 13 13 C 1.54468 * 102.75359 * 276.32255 * 12 11 10 14 14 N 1.47082 * 107.42506 * 338.70095 * 13 12 11 15 15 C 1.36939 * 125.62865 * 178.88632 * 14 13 12 16 16 H 1.08002 * 120.00350 * 180.02562 * 15 14 13 17 17 C 1.38816 * 119.99534 * 0.02562 * 15 14 13 18 18 N 1.31616 * 120.00105 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99865 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46514 * 60.00800 * 19 17 15 21 21 H 1.48497 * 109.46924 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47286 * 300.00752 * 19 17 15 23 23 C 1.47582 * 108.75033 * 358.92322 * 14 13 12 24 24 C 1.47110 * 120.71083 * 179.97438 * 7 5 4 25 25 N 1.46501 * 109.47092 * 239.99485 * 2 1 3 26 26 C 1.36882 * 126.39200 * 120.00390 * 25 2 1 27 27 C 1.34676 * 106.81640 * 180.02562 * 26 25 2 28 28 N 1.34129 * 108.01799 * 0.02562 * 27 26 25 29 29 C 1.30497 * 109.25552 * 359.72400 * 28 27 26 30 30 H 1.09003 * 109.46686 * 59.99844 * 1 2 3 31 31 H 1.08999 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46828 * 300.00199 * 1 2 3 33 33 H 1.09001 * 109.47007 * 174.99837 * 4 2 1 34 34 H 1.09002 * 109.47412 * 54.99296 * 4 2 1 35 35 H 1.09000 * 109.55796 * 114.39932 * 8 7 5 36 36 H 1.09001 * 109.64945 * 354.13088 * 8 7 5 37 37 H 1.09000 * 109.50559 * 184.74523 * 9 8 7 38 38 H 1.09001 * 109.53345 * 64.65033 * 9 8 7 39 39 H 1.09006 * 109.43414 * 299.89526 * 10 9 8 40 40 H 1.09002 * 109.40739 * 180.02562 * 10 9 8 41 41 H 1.09003 * 110.70812 * 158.04916 * 12 11 10 42 42 H 1.08996 * 110.86557 * 34.66750 * 12 11 10 43 43 H 1.09002 * 109.87908 * 219.20059 * 13 12 11 44 44 H 1.08996 * 109.87788 * 98.19920 * 13 12 11 45 45 H 0.97001 * 119.99940 * 179.97438 * 18 17 15 46 46 H 1.08999 * 110.37886 * 142.11879 * 23 14 13 47 47 H 1.09002 * 110.37372 * 264.36409 * 23 14 13 48 48 H 1.08996 * 109.57761 * 7.95843 * 24 7 5 49 49 H 1.09003 * 109.57112 * 247.56933 * 24 7 5 50 50 H 1.08000 * 126.59451 * 359.96517 * 26 25 2 51 51 H 1.07992 * 125.99136 * 180.02562 * 27 26 25 52 52 H 1.08002 * 125.64874 * 180.29144 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0117 1.0874 2.3632 7 7 1.9852 -0.3915 3.7001 8 6 2.7483 -1.6375 3.8556 9 6 1.9919 -2.5679 4.8088 10 6 1.7335 -1.8370 6.1301 11 6 0.9019 -0.5903 5.8714 12 6 0.5761 0.1291 7.2002 13 6 -0.6654 -0.6375 7.7074 14 7 -1.2774 -1.3019 6.5468 15 6 -2.3892 -2.1008 6.5795 16 1 -2.7620 -2.5450 5.6684 17 6 -3.0369 -2.3397 7.7838 18 7 -2.5828 -1.7980 8.8940 19 14 -4.5539 -3.4288 7.8284 20 1 -4.2042 -4.7848 7.3340 21 1 -5.0541 -3.5238 9.2233 22 1 -5.6093 -2.8434 6.9632 23 6 -0.4952 -0.9664 5.3411 24 6 1.6047 0.3561 4.9086 25 7 2.0184 -0.6907 -1.1961 26 6 2.8086 -0.1555 -2.1773 27 6 3.0184 -1.1296 -3.0833 28 7 2.3733 -2.2294 -2.6669 29 6 1.7767 -1.9755 -1.5344 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.1263 -0.7996 1.2056 34 1 1.6053 -1.7198 1.2952 35 1 3.7321 -1.4138 4.2682 36 1 2.8609 -2.1218 2.8856 37 1 2.5895 -3.4598 4.9972 38 1 1.0412 -2.8551 4.3598 39 1 2.6850 -1.5517 6.5789 40 1 1.1957 -2.4975 6.8102 41 1 0.3363 1.1774 7.0222 42 1 1.4021 0.0354 7.9051 43 1 -1.3753 0.0598 8.1523 44 1 -0.3655 -1.3818 8.4450 45 1 -3.0357 -1.9646 9.7355 46 1 -0.4302 -1.8294 4.6785 47 1 -0.9453 -0.1215 4.8197 48 1 0.9306 1.1688 4.6382 49 1 2.4980 0.7625 5.3830 50 1 3.1897 0.8543 -2.2177 51 1 3.6033 -1.0407 -3.9867 52 1 1.1857 -2.6763 -0.9634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054205503.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:41 Heat of formation + Delta-G solvation = 54.701547 kcal Electronic energy + Delta-G solvation = -31781.161658 eV Core-core repulsion = 27782.405577 eV Total energy + Delta-G solvation = -3998.756081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.31700 -40.61367 -38.75231 -36.14240 -35.70322 -33.13187 -31.97433 -31.32065 -30.30200 -29.45967 -28.85579 -28.03261 -25.70489 -25.40595 -23.95730 -23.21042 -22.17424 -21.55689 -20.70633 -20.17374 -19.19247 -18.13862 -17.95917 -16.95181 -16.47774 -16.14557 -15.81783 -15.32603 -14.98505 -14.77263 -14.65676 -14.34632 -14.03661 -13.94515 -13.87761 -13.54176 -13.38227 -13.28183 -13.12065 -13.03520 -12.74784 -12.14390 -12.00739 -11.94163 -11.79544 -11.69616 -11.59541 -11.16164 -10.93174 -10.90944 -10.80206 -10.68517 -10.18550 -10.17539 -10.14116 -9.99143 -9.88737 -9.79868 -9.66931 -9.64547 -8.72400 -8.60101 -8.59069 -6.82331 -5.71935 -3.04675 1.84993 2.36750 2.47284 2.97224 3.00269 3.38938 3.43672 3.44536 4.09785 4.25364 4.38085 4.48884 4.52284 4.66627 4.67995 4.79247 4.95711 5.01951 5.05725 5.10508 5.12459 5.22459 5.24865 5.32690 5.41354 5.48875 5.50709 5.52858 5.57663 5.70268 5.82200 5.82958 5.86066 5.93522 5.98310 6.05005 6.11490 6.24630 6.31297 6.39474 6.48026 6.53370 6.58880 6.66909 6.76278 6.91166 6.97063 7.29937 7.54761 7.61520 7.81459 7.88598 8.01428 8.25525 9.21861 9.82285 10.48905 11.39672 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.002676 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.966673 B =10462.438423 C =11344.208453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.150 3.850 3 H 0.109 0.891 4 C -0.152 4.152 5 C 0.522 3.478 6 O -0.539 6.539 7 N -0.602 5.602 8 C 0.106 3.894 9 C -0.136 4.136 10 C -0.096 4.096 11 C -0.086 4.086 12 C -0.134 4.134 13 C 0.180 3.820 14 N -0.603 5.603 15 C -0.226 4.226 16 H 0.075 0.925 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.910 3.090 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.152 3.848 24 C 0.130 3.870 25 N -0.453 5.453 26 C -0.056 4.056 27 C -0.034 4.034 28 N -0.498 5.498 29 C 0.183 3.817 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.046 0.954 45 H 0.252 0.748 46 H 0.036 0.964 47 H 0.015 0.985 48 H 0.093 0.907 49 H 0.064 0.936 50 H 0.172 0.828 51 H 0.167 0.833 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.241 3.162 -14.732 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.127 0.873 4 C -0.192 4.192 5 C 0.309 3.691 6 O -0.417 6.417 7 N -0.334 5.334 8 C -0.016 4.016 9 C -0.174 4.174 10 C -0.134 4.134 11 C -0.088 4.088 12 C -0.173 4.173 13 C 0.055 3.945 14 N -0.330 5.330 15 C -0.355 4.355 16 H 0.093 0.907 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.026 3.974 24 C 0.007 3.993 25 N -0.136 5.136 26 C -0.189 4.189 27 C -0.182 4.182 28 N -0.216 5.216 29 C -0.100 4.100 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.033 0.967 48 H 0.111 0.889 49 H 0.082 0.918 50 H 0.189 0.811 51 H 0.185 0.815 52 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 14.677 2.954 -14.906 21.126 hybrid contribution -0.752 0.102 0.614 0.976 sum 13.925 3.056 -14.291 20.186 Atomic orbital electron populations 1.22310 0.92071 1.03295 1.04865 1.21178 0.96466 0.96726 0.80992 0.87334 1.22035 1.03569 1.01120 0.92515 1.20093 0.79334 0.85545 0.84157 1.90696 1.40142 1.24770 1.86088 1.48123 1.54755 1.24641 1.05921 1.21799 0.94747 0.84562 1.00540 1.21984 1.01138 0.97780 0.96545 1.21229 0.98853 0.96596 0.96716 1.21440 0.96460 0.95220 0.95692 1.22870 1.00259 0.99072 0.95111 1.21132 0.89582 0.94370 0.89368 1.44493 1.30161 1.56485 1.01848 1.18976 1.01557 1.21141 0.93780 0.90747 1.24773 0.99417 1.00691 0.95529 1.69948 1.41346 1.47748 0.97971 0.86232 0.82839 0.80275 0.76616 1.21222 1.21617 1.21228 1.21447 0.88470 0.96943 0.90512 1.21551 0.99419 0.94649 0.83632 1.45816 1.37869 1.11362 1.18518 1.22771 1.02380 1.01298 0.92445 1.22296 1.04788 0.89722 1.01406 1.70312 1.12527 1.28291 1.10425 1.24908 1.03822 0.85434 0.95818 0.91889 0.92020 0.88067 0.88227 0.87885 0.91270 0.90242 0.90906 0.90755 0.92650 0.90171 0.92345 0.91978 0.94147 0.93624 0.93759 0.94564 0.96730 0.88861 0.91768 0.81083 0.81544 0.78242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 8.99 37.16 0.33 -1.26 16 2 C 0.15 1.28 2.70 -67.93 -0.18 1.09 16 3 H 0.11 0.95 7.89 -51.93 -0.41 0.54 16 4 C -0.15 -1.23 3.52 -27.88 -0.10 -1.33 16 5 C 0.52 6.03 7.42 -10.99 -0.08 5.95 16 6 O -0.54 -7.91 13.40 5.55 0.07 -7.83 16 7 N -0.60 -6.91 2.87 -173.22 -0.50 -7.41 16 8 C 0.11 0.96 6.32 -3.71 -0.02 0.94 16 9 C -0.14 -1.54 5.91 -26.54 -0.16 -1.70 16 10 C -0.10 -1.36 4.64 -27.11 -0.13 -1.49 16 11 C -0.09 -1.36 0.55 -153.98 -0.08 -1.45 16 12 C -0.13 -2.35 5.91 -25.13 -0.15 -2.50 16 13 C 0.18 4.23 5.02 -2.95 -0.01 4.21 16 14 N -0.60 -14.94 3.39 -170.31 -0.58 -15.52 16 15 C -0.23 -6.21 10.28 -15.06 -0.15 -6.36 16 16 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 18 N -0.92 -26.75 10.30 55.49 0.57 -26.18 16 19 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.15 3.05 5.96 -2.88 -0.02 3.03 16 24 C 0.13 1.74 5.12 -4.11 -0.02 1.72 16 25 N -0.45 -4.05 2.62 -111.45 -0.29 -4.34 16 26 C -0.06 -0.49 11.54 -16.56 -0.19 -0.68 16 27 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 28 N -0.50 -5.98 11.25 -14.67 -0.17 -6.14 16 29 C 0.18 1.80 11.65 -90.38 -1.05 0.75 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.54 7.95 -51.93 -0.41 0.13 16 32 H 0.10 1.19 5.95 -51.93 -0.31 0.88 16 33 H 0.10 0.69 7.93 -51.93 -0.41 0.27 16 34 H 0.10 0.73 7.65 -51.93 -0.40 0.34 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.54 5.95 -51.93 -0.31 0.24 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.98 6.33 -51.93 -0.33 0.65 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.41 7.85 -51.93 -0.41 1.00 16 41 H 0.06 0.98 8.01 -51.93 -0.42 0.57 16 42 H 0.06 0.97 8.01 -51.93 -0.42 0.55 16 43 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 44 H 0.05 1.18 7.37 -51.93 -0.38 0.80 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.04 0.72 6.10 -51.93 -0.32 0.40 16 47 H 0.02 0.32 7.87 -51.93 -0.41 -0.09 16 48 H 0.09 1.43 6.84 -51.93 -0.36 1.08 16 49 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 51 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 52 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -32.97 397.83 -10.84 -43.81 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.60 Total: 0.61 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.33 Total: 0.05 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.96 Total: -59.58 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.07 Total: -7.83 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.97 -10.84 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054205503.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.514 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds