Wall clock time and date at job start Wed Apr 1 2020 05:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47479 * 2 1 4 4 C 1.53001 * 109.46791 * 120.00256 * 2 1 3 5 5 C 1.50701 * 109.47096 * 294.99788 * 4 2 1 6 6 O 1.21289 * 119.99750 * 359.97438 * 5 4 2 7 7 N 1.34770 * 120.00221 * 180.02562 * 5 4 2 8 8 C 1.46935 * 120.71401 * 359.97438 * 7 5 4 9 9 C 1.53180 * 108.93893 * 234.23427 * 8 7 5 10 10 C 1.53189 * 109.28013 * 304.68842 * 9 8 7 11 11 C 1.52073 * 109.67596 * 59.95692 * 10 9 8 12 12 C 1.54577 * 110.52308 * 177.48528 * 11 10 9 13 13 C 1.54468 * 102.75359 * 276.32255 * 12 11 10 14 14 N 1.47082 * 107.42506 * 338.70095 * 13 12 11 15 15 C 1.36939 * 125.62865 * 178.88632 * 14 13 12 16 16 H 1.08002 * 120.00350 * 180.02562 * 15 14 13 17 17 C 1.38816 * 119.99534 * 0.02562 * 15 14 13 18 18 N 1.31616 * 120.00105 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99865 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46514 * 60.00800 * 19 17 15 21 21 H 1.48497 * 109.46924 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47286 * 300.00752 * 19 17 15 23 23 C 1.47582 * 108.75033 * 358.92322 * 14 13 12 24 24 C 1.47110 * 120.71083 * 179.97438 * 7 5 4 25 25 N 1.46501 * 109.47092 * 239.99485 * 2 1 3 26 26 C 1.36882 * 126.39200 * 120.00390 * 25 2 1 27 27 C 1.34676 * 106.81640 * 180.02562 * 26 25 2 28 28 N 1.34129 * 108.01799 * 0.02562 * 27 26 25 29 29 C 1.30497 * 109.25552 * 359.72400 * 28 27 26 30 30 H 1.09003 * 109.46686 * 59.99844 * 1 2 3 31 31 H 1.08999 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46828 * 300.00199 * 1 2 3 33 33 H 1.09001 * 109.47007 * 174.99837 * 4 2 1 34 34 H 1.09002 * 109.47412 * 54.99296 * 4 2 1 35 35 H 1.09000 * 109.55796 * 114.39932 * 8 7 5 36 36 H 1.09001 * 109.64945 * 354.13088 * 8 7 5 37 37 H 1.09000 * 109.50559 * 184.74523 * 9 8 7 38 38 H 1.09001 * 109.53345 * 64.65033 * 9 8 7 39 39 H 1.09006 * 109.43414 * 299.89526 * 10 9 8 40 40 H 1.09002 * 109.40739 * 180.02562 * 10 9 8 41 41 H 1.09003 * 110.70812 * 158.04916 * 12 11 10 42 42 H 1.08996 * 110.86557 * 34.66750 * 12 11 10 43 43 H 1.09002 * 109.87908 * 219.20059 * 13 12 11 44 44 H 1.08996 * 109.87788 * 98.19920 * 13 12 11 45 45 H 0.97001 * 119.99940 * 179.97438 * 18 17 15 46 46 H 1.08999 * 110.37886 * 142.11879 * 23 14 13 47 47 H 1.09002 * 110.37372 * 264.36409 * 23 14 13 48 48 H 1.08996 * 109.57761 * 7.95843 * 24 7 5 49 49 H 1.09003 * 109.57112 * 247.56933 * 24 7 5 50 50 H 1.08000 * 126.59451 * 359.96517 * 26 25 2 51 51 H 1.07992 * 125.99136 * 180.02562 * 27 26 25 52 52 H 1.08002 * 125.64874 * 180.29144 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0117 1.0874 2.3632 7 7 1.9852 -0.3915 3.7001 8 6 2.7483 -1.6375 3.8556 9 6 1.9919 -2.5679 4.8088 10 6 1.7335 -1.8370 6.1301 11 6 0.9019 -0.5903 5.8714 12 6 0.5761 0.1291 7.2002 13 6 -0.6654 -0.6375 7.7074 14 7 -1.2774 -1.3019 6.5468 15 6 -2.3892 -2.1008 6.5795 16 1 -2.7620 -2.5450 5.6684 17 6 -3.0369 -2.3397 7.7838 18 7 -2.5828 -1.7980 8.8940 19 14 -4.5539 -3.4288 7.8284 20 1 -4.2042 -4.7848 7.3340 21 1 -5.0541 -3.5238 9.2233 22 1 -5.6093 -2.8434 6.9632 23 6 -0.4952 -0.9664 5.3411 24 6 1.6047 0.3561 4.9086 25 7 2.0184 -0.6907 -1.1961 26 6 2.8086 -0.1555 -2.1773 27 6 3.0184 -1.1296 -3.0833 28 7 2.3733 -2.2294 -2.6669 29 6 1.7767 -1.9755 -1.5344 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.1263 -0.7996 1.2056 34 1 1.6053 -1.7198 1.2952 35 1 3.7321 -1.4138 4.2682 36 1 2.8609 -2.1218 2.8856 37 1 2.5895 -3.4598 4.9972 38 1 1.0412 -2.8551 4.3598 39 1 2.6850 -1.5517 6.5789 40 1 1.1957 -2.4975 6.8102 41 1 0.3363 1.1774 7.0222 42 1 1.4021 0.0354 7.9051 43 1 -1.3753 0.0598 8.1523 44 1 -0.3655 -1.3818 8.4450 45 1 -3.0357 -1.9646 9.7355 46 1 -0.4302 -1.8294 4.6785 47 1 -0.9453 -0.1215 4.8197 48 1 0.9306 1.1688 4.6382 49 1 2.4980 0.7625 5.3830 50 1 3.1897 0.8543 -2.2177 51 1 3.6033 -1.0407 -3.9867 52 1 1.1857 -2.6763 -0.9634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054205503.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:38 Heat of formation + Delta-G solvation = 36.507688 kcal Electronic energy + Delta-G solvation = -31781.950603 eV Core-core repulsion = 27782.405577 eV Total energy + Delta-G solvation = -3999.545026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.01085 -41.63560 -39.97075 -37.38046 -36.53757 -34.81098 -33.09745 -32.31247 -31.72621 -30.40062 -30.04779 -29.03720 -27.43438 -26.38179 -25.37486 -24.10987 -23.27927 -22.25920 -22.03436 -21.36518 -20.21729 -19.25716 -18.89453 -18.66886 -17.36485 -17.03583 -16.85165 -16.59871 -16.32948 -16.01206 -15.74716 -15.52430 -15.04579 -14.98855 -14.67259 -14.66774 -14.42815 -14.21323 -14.14409 -13.93438 -13.90182 -13.72444 -13.41693 -13.17160 -12.90056 -12.80958 -12.72724 -12.53761 -12.36739 -12.17013 -12.14226 -12.08223 -12.04977 -11.69089 -11.54625 -11.30264 -11.14636 -10.90358 -10.75555 -10.69514 -10.57210 -9.55829 -9.40337 -8.88990 -7.85957 -5.20573 1.17779 1.42765 1.45800 1.52051 1.56083 1.68994 2.16895 2.27556 2.47707 3.31524 3.41692 3.48311 3.59808 3.68838 3.75801 3.90683 3.90843 3.97554 4.05661 4.10938 4.12596 4.21946 4.35510 4.43253 4.47784 4.55408 4.58674 4.62678 4.65486 4.72469 4.76923 4.79833 4.80678 4.84821 4.88548 4.90323 4.97205 5.05365 5.17021 5.19907 5.27132 5.42134 5.42525 5.48762 5.52298 5.56385 5.68880 5.78529 5.87625 6.19286 6.29667 6.43933 7.10066 7.14745 7.19211 7.77769 8.42736 9.24033 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.002676 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.966673 B =10462.438423 C =11344.208453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.157 3.843 3 H 0.109 0.891 4 C -0.141 4.141 5 C 0.518 3.482 6 O -0.576 6.576 7 N -0.605 5.605 8 C 0.108 3.892 9 C -0.132 4.132 10 C -0.094 4.094 11 C -0.070 4.070 12 C -0.123 4.123 13 C 0.189 3.811 14 N -0.623 5.623 15 C -0.241 4.241 16 H 0.076 0.924 17 C -0.064 4.064 18 N -0.950 5.950 19 Si 0.975 3.025 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.281 1.281 23 C 0.154 3.846 24 C 0.138 3.862 25 N -0.450 5.450 26 C -0.051 4.051 27 C -0.056 4.056 28 N -0.535 5.535 29 C 0.177 3.823 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.065 0.935 42 H 0.089 0.911 43 H -0.003 1.003 44 H 0.014 0.986 45 H 0.246 0.754 46 H 0.039 0.961 47 H -0.004 1.004 48 H 0.070 0.930 49 H 0.092 0.908 50 H 0.197 0.803 51 H 0.181 0.819 52 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.832 2.622 -16.298 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.054 3.946 3 H 0.127 0.873 4 C -0.181 4.181 5 C 0.307 3.693 6 O -0.456 6.456 7 N -0.336 5.336 8 C -0.013 4.013 9 C -0.170 4.170 10 C -0.132 4.132 11 C -0.072 4.072 12 C -0.161 4.161 13 C 0.064 3.936 14 N -0.349 5.349 15 C -0.370 4.370 16 H 0.094 0.906 17 C -0.258 4.258 18 N -0.599 5.599 19 Si 0.803 3.197 20 H -0.200 1.200 21 H -0.220 1.220 22 H -0.207 1.207 23 C 0.029 3.971 24 C 0.015 3.985 25 N -0.132 5.132 26 C -0.185 4.185 27 C -0.203 4.203 28 N -0.254 5.254 29 C -0.106 4.106 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.015 0.985 44 H 0.032 0.968 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.014 0.986 48 H 0.088 0.912 49 H 0.110 0.890 50 H 0.214 0.786 51 H 0.198 0.802 52 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 17.298 2.403 -16.510 24.033 hybrid contribution -1.611 0.289 1.077 1.959 sum 15.687 2.692 -15.433 22.170 Atomic orbital electron populations 1.22222 0.93153 1.03252 1.03537 1.21056 0.95500 0.96840 0.81178 0.87328 1.21997 1.05044 1.00908 0.90189 1.20661 0.78445 0.85267 0.84967 1.90695 1.41668 1.26611 1.86633 1.48207 1.54839 1.25353 1.05225 1.22010 0.94784 0.82855 1.01667 1.21947 1.00842 0.99019 0.95182 1.21201 0.99072 0.95019 0.97900 1.21333 0.94468 0.96527 0.94856 1.22756 0.98109 0.98652 0.96631 1.20879 0.90990 0.92997 0.88781 1.44790 1.30177 1.56106 1.03819 1.19346 1.02534 1.21222 0.93907 0.90621 1.25599 1.02441 1.02422 0.95288 1.70178 1.42468 1.49085 0.98168 0.85209 0.79335 0.78889 0.76261 1.20043 1.21959 1.20709 1.21540 0.90459 0.96122 0.88998 1.21301 0.99769 0.93379 0.84064 1.45808 1.37761 1.11131 1.18547 1.23196 1.01491 1.02091 0.91673 1.22661 1.05375 0.89753 1.02471 1.70287 1.13828 1.29643 1.11663 1.25289 1.03664 0.86032 0.95590 0.92079 0.91437 0.90464 0.85818 0.86334 0.88604 0.87260 0.88498 0.93200 0.89721 0.94317 0.91625 0.89270 0.98469 0.96813 0.94446 0.94321 0.98626 0.91159 0.88955 0.78559 0.80207 0.76405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 8.99 71.98 0.65 -2.30 16 2 C 0.16 2.31 2.70 44.99 0.12 2.43 16 3 H 0.11 1.65 7.89 -2.39 -0.02 1.63 16 4 C -0.14 -1.80 3.52 29.85 0.11 -1.69 16 5 C 0.52 10.71 7.42 87.66 0.65 11.36 16 6 O -0.58 -16.39 13.40 -3.06 -0.04 -16.44 16 7 N -0.60 -12.00 2.87 -820.32 -2.35 -14.35 16 8 C 0.11 1.44 6.32 86.36 0.55 1.99 16 9 C -0.13 -2.57 5.91 30.72 0.18 -2.39 16 10 C -0.09 -2.48 4.64 30.35 0.14 -2.34 16 11 C -0.07 -2.15 0.55 -51.84 -0.03 -2.18 16 12 C -0.12 -4.28 5.91 31.63 0.19 -4.09 16 13 C 0.19 9.30 5.02 86.77 0.44 9.73 16 14 N -0.62 -32.13 3.39 -692.74 -2.35 -34.48 16 15 C -0.24 -13.69 10.28 84.03 0.86 -12.83 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 17 C -0.06 -3.71 5.49 84.86 0.47 -3.25 16 18 N -0.95 -57.60 10.30 21.65 0.22 -57.37 16 19 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 C 0.15 6.28 5.96 86.54 0.52 6.80 16 24 C 0.14 3.40 5.12 86.00 0.44 3.84 16 25 N -0.45 -6.87 2.62 -506.53 -1.33 -8.20 16 26 C -0.05 -0.76 11.54 83.09 0.96 0.19 16 27 C -0.06 -1.02 11.87 83.52 0.99 -0.03 16 28 N -0.54 -12.04 11.25 -200.31 -2.25 -14.29 16 29 C 0.18 3.09 11.65 180.26 2.10 5.19 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.10 7.95 -2.39 -0.02 1.08 16 32 H 0.08 1.82 5.95 -2.39 -0.01 1.80 16 33 H 0.12 1.07 7.93 -2.39 -0.02 1.05 16 34 H 0.12 1.20 7.65 -2.39 -0.02 1.18 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 0.87 5.95 -2.39 -0.01 0.86 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.22 6.33 -2.39 -0.02 1.21 16 39 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.04 1.35 7.85 -2.39 -0.02 1.33 16 41 H 0.07 2.19 8.01 -2.39 -0.02 2.17 16 42 H 0.09 2.64 8.01 -2.39 -0.02 2.62 16 43 H 0.00 -0.17 7.50 -2.39 -0.02 -0.19 16 44 H 0.01 0.75 7.37 -2.39 -0.02 0.73 16 45 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 46 H 0.04 1.55 6.10 -2.39 -0.01 1.54 16 47 H 0.00 -0.18 7.87 -2.39 -0.02 -0.20 16 48 H 0.07 2.10 6.84 -2.39 -0.02 2.09 16 49 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.20 1.74 8.06 -2.91 -0.02 1.71 16 51 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 52 H 0.22 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -77.22 397.83 4.15 -73.07 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.90 Total: 13.35 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 9.32 Total: 10.45 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -8.06 Total: -128.69 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.04 Total: -16.44 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -77.22 4.15 -73.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054205503.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.578 kcal (2) G-P(sol) polarization free energy of solvation -77.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds