Wall clock time and date at job start Wed Apr 1 2020 04:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46924 * 2 1 4 4 C 1.52996 * 109.47068 * 119.99936 * 2 1 3 5 5 C 1.50697 * 109.47427 * 295.00443 * 4 2 1 6 6 C 1.34663 * 126.59464 * 85.01984 * 5 4 2 7 7 N 1.34127 * 108.02444 * 179.97438 * 6 5 4 8 8 C 1.30498 * 109.25555 * 0.02562 * 7 6 5 9 9 N 1.35048 * 108.69779 * 359.76079 * 8 7 6 10 10 H 0.96996 * 126.39517 * 180.26867 * 9 8 7 11 11 C 1.50692 * 109.47067 * 240.00348 * 2 1 3 12 12 O 1.21279 * 119.99906 * 263.00498 * 11 2 1 13 13 N 1.34780 * 120.00236 * 83.00738 * 11 2 1 14 14 C 1.46933 * 120.70060 * 4.62833 * 13 11 2 15 15 C 1.52725 * 109.14742 * 234.15640 * 14 13 11 16 16 C 1.53166 * 109.35712 * 304.97748 * 15 14 13 17 17 C 1.52224 * 109.68775 * 60.02166 * 16 15 14 18 18 C 1.54495 * 110.28039 * 63.07166 * 17 16 15 19 19 C 1.55026 * 101.53003 * 153.37904 * 18 17 16 20 20 N 1.47479 * 104.90346 * 323.64653 * 19 18 17 21 21 C 1.36935 * 125.66174 * 204.02988 * 20 19 18 22 22 H 1.08005 * 120.00191 * 179.97438 * 21 20 19 23 23 C 1.38809 * 120.00169 * 359.97438 * 21 20 19 24 24 N 1.31622 * 119.99909 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00263 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46839 * 60.00263 * 25 23 21 27 27 H 1.48501 * 109.47143 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47191 * 300.00117 * 25 23 21 29 29 C 1.47189 * 108.67796 * 24.00898 * 20 19 18 30 30 C 1.47070 * 120.70302 * 184.89821 * 13 11 2 31 31 H 1.09000 * 109.47036 * 186.00462 * 1 2 3 32 32 H 1.08995 * 109.47434 * 306.00280 * 1 2 3 33 33 H 1.09001 * 109.47012 * 66.00396 * 1 2 3 34 34 H 1.09006 * 109.47120 * 55.00340 * 4 2 1 35 35 H 1.09001 * 109.47183 * 175.00356 * 4 2 1 36 36 H 1.08007 * 125.99399 * 359.97103 * 6 5 4 37 37 H 1.08004 * 125.65137 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.56999 * 354.02292 * 14 13 11 39 39 H 1.08995 * 109.56777 * 114.38434 * 14 13 11 40 40 H 1.09000 * 109.57536 * 184.94528 * 15 14 13 41 41 H 1.08997 * 109.38975 * 64.89245 * 15 14 13 42 42 H 1.08997 * 109.43354 * 299.95661 * 16 15 14 43 43 H 1.08997 * 109.39682 * 180.02562 * 16 15 14 44 44 H 1.08998 * 111.01214 * 271.44545 * 18 17 16 45 45 H 1.09001 * 111.00942 * 35.31579 * 18 17 16 46 46 H 1.09003 * 110.34687 * 204.79043 * 19 18 17 47 47 H 1.08996 * 110.44402 * 82.55175 * 19 18 17 48 48 H 0.97004 * 120.00151 * 180.02562 * 24 23 21 49 49 H 1.08995 * 109.90928 * 239.12064 * 29 20 19 50 50 H 1.08999 * 109.90747 * 117.84790 * 29 20 19 51 51 H 1.08996 * 109.57694 * 247.37186 * 30 13 11 52 52 H 1.09007 * 109.57075 * 7.74659 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 6 0.4666 -0.0214 3.1303 7 7 0.5106 0.8295 4.1662 8 6 1.6678 1.4326 4.1789 9 7 2.4055 0.9757 3.1441 10 1 3.3078 1.2487 2.9158 11 6 2.0324 -0.7103 -1.2304 12 8 2.3551 -1.8777 -1.1674 13 7 2.1230 -0.0483 -2.4010 14 6 1.8331 1.3903 -2.4736 15 6 0.7758 1.6346 -3.5483 16 6 1.2519 1.0344 -4.8746 17 6 1.4699 -0.4632 -4.7108 18 6 0.1366 -1.1640 -4.3670 19 6 0.3861 -2.5917 -4.9172 20 7 1.1802 -2.3922 -6.1437 21 6 1.2521 -3.2623 -7.1987 22 1 1.8648 -3.0230 -8.0553 23 6 0.5374 -4.4518 -7.1671 24 7 -0.2089 -4.7437 -6.1230 25 14 0.6349 -5.6385 -8.6065 26 1 2.0428 -6.0708 -8.7972 27 1 -0.2133 -6.8252 -8.3280 28 1 0.1532 -4.9633 -9.8382 29 6 1.8824 -1.1022 -6.0460 30 6 2.5085 -0.7518 -3.6336 31 1 -0.3633 -1.0220 0.1075 32 1 -0.3634 0.6040 0.8313 33 1 -0.3633 0.4179 -0.9389 34 1 1.6054 -1.7198 1.2951 35 1 3.1264 -0.7994 1.2056 36 1 -0.3653 -0.6578 2.8667 37 1 1.9848 2.1713 4.9003 38 1 1.4588 1.7364 -1.5102 39 1 2.7426 1.9335 -2.7304 40 1 0.6191 2.7065 -3.6694 41 1 -0.1596 1.1615 -3.2498 42 1 2.1883 1.5069 -5.1711 43 1 0.4980 1.2088 -5.6422 44 1 -0.0283 -1.1834 -3.2897 45 1 -0.6989 -0.6877 -4.8801 46 1 -0.5607 -3.0777 -5.1533 47 1 0.9465 -3.1854 -4.1951 48 1 -0.7080 -5.5752 -6.1007 49 1 1.5885 -0.4561 -6.8732 50 1 2.9601 -1.2642 -6.0628 51 1 3.4855 -0.3998 -3.9648 52 1 2.5498 -1.8245 -3.4442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054212532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:09 Heat of formation + Delta-G solvation = 43.366847 kcal Electronic energy + Delta-G solvation = -31859.385600 eV Core-core repulsion = 27860.138010 eV Total energy + Delta-G solvation = -3999.247590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.33432 -40.58274 -38.55988 -35.90954 -35.17948 -33.08677 -32.71124 -31.94977 -30.34573 -29.69091 -28.55140 -26.86466 -25.93828 -25.61300 -23.74872 -22.98927 -21.90756 -21.65107 -21.04495 -20.19279 -18.95041 -18.18485 -18.10638 -17.11053 -16.72828 -15.97459 -15.45392 -15.11924 -14.98478 -14.84089 -14.44732 -14.41363 -13.94490 -13.89144 -13.83034 -13.53380 -13.22420 -13.10964 -12.78635 -12.73079 -12.48693 -12.22146 -12.11834 -11.91239 -11.60006 -11.50763 -11.31171 -11.07758 -11.01197 -10.84990 -10.79287 -10.71784 -10.27831 -10.23369 -10.13909 -10.06840 -9.82669 -9.67151 -9.53749 -9.38308 -8.60716 -8.58850 -8.47948 -6.77600 -5.59159 -3.01190 1.74688 2.69365 2.80339 2.90406 3.10424 3.43424 3.47390 3.49127 4.25637 4.46550 4.52457 4.55304 4.67258 4.71344 4.83152 4.93781 5.00472 5.04939 5.10332 5.18801 5.29997 5.31002 5.40799 5.43624 5.52789 5.55518 5.59312 5.63735 5.68829 5.79802 5.84133 5.91356 5.98177 5.99358 6.05184 6.08387 6.14357 6.29852 6.33599 6.41542 6.48680 6.53132 6.63122 6.74623 6.82182 6.94837 7.07317 7.50650 7.61614 7.67974 7.79836 7.92798 8.27382 8.42266 9.27432 9.88496 10.54061 11.44229 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.002533 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.011107 B =11052.400651 C =11853.172266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.028 4.028 5 C -0.015 4.015 6 C -0.021 4.021 7 N -0.494 5.494 8 C 0.178 3.822 9 N -0.568 5.568 10 H 0.418 0.582 11 C 0.517 3.483 12 O -0.533 6.533 13 N -0.606 5.606 14 C 0.106 3.894 15 C -0.134 4.134 16 C -0.101 4.101 17 C -0.084 4.084 18 C -0.127 4.127 19 C 0.154 3.846 20 N -0.603 5.603 21 C -0.223 4.223 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.921 5.921 25 Si 0.914 3.086 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.286 1.286 29 C 0.149 3.851 30 C 0.131 3.869 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.170 0.830 37 H 0.206 0.794 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.103 0.897 47 H 0.013 0.987 48 H 0.252 0.748 49 H 0.026 0.974 50 H 0.020 0.980 51 H 0.060 0.940 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.912 18.281 16.223 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 H 0.106 0.894 4 C -0.067 4.067 5 C -0.131 4.131 6 C -0.168 4.168 7 N -0.213 5.213 8 C -0.106 4.106 9 N -0.172 5.172 10 H 0.256 0.744 11 C 0.304 3.696 12 O -0.409 6.409 13 N -0.339 5.339 14 C -0.017 4.017 15 C -0.173 4.173 16 C -0.139 4.139 17 C -0.085 4.085 18 C -0.166 4.166 19 C 0.029 3.971 20 N -0.330 5.330 21 C -0.351 4.351 22 H 0.094 0.906 23 C -0.207 4.207 24 N -0.569 5.569 25 Si 0.744 3.256 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.022 3.978 30 C 0.010 3.990 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.187 0.813 37 H 0.222 0.778 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.120 0.880 47 H 0.031 0.969 48 H 0.063 0.937 49 H 0.044 0.956 50 H 0.038 0.962 51 H 0.078 0.922 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.321 17.533 16.776 24.647 hybrid contribution 1.246 -0.418 -1.452 1.958 sum 5.567 17.115 15.324 23.638 Atomic orbital electron populations 1.21831 0.91958 1.03597 1.02820 1.21275 0.98614 1.00042 0.92505 0.89420 1.19902 1.01555 0.98242 0.87023 1.21279 0.94047 0.98328 0.99399 1.22156 0.97683 1.02383 0.94606 1.70296 1.19471 1.10115 1.21416 1.24953 0.88903 1.02964 0.93763 1.43329 1.16443 1.33167 1.24261 0.74438 1.20476 0.77747 0.87055 0.84282 1.90742 1.48767 1.16455 1.84904 1.48136 1.68100 1.09254 1.08380 1.21675 0.98810 0.81216 1.00034 1.21861 0.99027 1.00728 0.95634 1.21382 1.01112 0.94769 0.96642 1.21341 0.96924 0.94452 0.95791 1.22926 0.94797 0.99667 0.99190 1.21921 0.98616 0.90232 0.86300 1.44544 1.52709 1.17587 1.18116 1.19007 1.23359 0.97593 0.95190 0.90647 1.24787 0.99863 0.98064 0.97945 1.69811 1.33635 1.24692 1.28757 0.86171 0.77354 0.80491 0.81575 1.21265 1.21602 1.21236 1.21179 0.95169 0.88585 0.92817 1.21538 0.96039 0.99198 0.82260 0.91338 0.91041 0.91884 0.88054 0.90783 0.81306 0.77755 0.90024 0.91619 0.91074 0.91092 0.92280 0.91408 0.92757 0.92406 0.87960 0.96941 0.93726 0.95608 0.96203 0.92155 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.50 37.16 0.32 -1.05 16 2 C -0.10 -0.99 1.86 -91.77 -0.17 -1.16 16 3 H 0.09 0.68 6.38 -51.93 -0.33 0.35 16 4 C -0.03 -0.27 4.67 -27.89 -0.13 -0.40 16 5 C -0.01 -0.13 6.09 -81.60 -0.50 -0.63 16 6 C -0.02 -0.21 10.24 -17.81 -0.18 -0.39 16 7 N -0.49 -5.42 11.25 -14.66 -0.16 -5.59 16 8 C 0.18 1.33 13.04 -90.37 -1.18 0.15 16 9 N -0.57 -3.73 6.15 -10.30 -0.06 -3.79 16 10 H 0.42 1.48 8.96 -40.82 -0.37 1.12 16 11 C 0.52 7.17 6.82 -10.99 -0.07 7.09 16 12 O -0.53 -9.78 15.62 5.56 0.09 -9.69 16 13 N -0.61 -7.94 2.52 -173.42 -0.44 -8.37 16 14 C 0.11 0.99 6.02 -3.95 -0.02 0.97 16 15 C -0.13 -1.35 5.89 -26.79 -0.16 -1.51 16 16 C -0.10 -1.29 4.53 -27.04 -0.12 -1.41 16 17 C -0.08 -1.40 0.56 -154.08 -0.09 -1.48 16 18 C -0.13 -2.43 4.91 -24.88 -0.12 -2.55 16 19 C 0.15 3.85 5.56 -2.44 -0.01 3.83 16 20 N -0.60 -15.63 3.40 -170.23 -0.58 -16.21 16 21 C -0.22 -6.31 10.28 -15.06 -0.15 -6.46 16 22 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 23 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 24 N -0.92 -27.51 10.09 55.49 0.56 -26.95 16 25 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 C 0.15 3.07 6.43 -3.32 -0.02 3.05 16 30 C 0.13 2.13 4.95 -4.04 -0.02 2.11 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.61 6.59 -51.93 -0.34 0.26 16 33 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 34 H 0.10 1.09 8.04 -51.93 -0.42 0.67 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.21 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.08 0.61 5.20 -51.93 -0.27 0.34 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.79 7.32 -51.93 -0.38 0.41 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 44 H 0.05 1.00 7.60 -51.93 -0.39 0.60 16 45 H 0.06 1.09 8.01 -51.93 -0.42 0.68 16 46 H 0.10 2.89 5.88 -51.93 -0.31 2.59 16 47 H 0.01 0.35 7.66 -51.93 -0.40 -0.05 16 48 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.03 0.53 7.79 -51.93 -0.40 0.12 16 50 H 0.02 0.41 7.80 -51.93 -0.40 0.01 16 51 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 52 H 0.10 2.02 6.26 -51.93 -0.33 1.69 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -35.26 396.17 -10.89 -46.15 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.51 Total: 1.29 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.74 Total: -0.25 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.69 Total: -60.91 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.26 -10.89 -46.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054212532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.515 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds