Wall clock time and date at job start Wed Apr 1 2020 04:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46924 * 2 1 4 4 C 1.52996 * 109.47068 * 119.99936 * 2 1 3 5 5 C 1.50697 * 109.47427 * 295.00443 * 4 2 1 6 6 C 1.34663 * 126.59464 * 85.01984 * 5 4 2 7 7 N 1.34127 * 108.02444 * 179.97438 * 6 5 4 8 8 C 1.30498 * 109.25555 * 0.02562 * 7 6 5 9 9 N 1.35048 * 108.69779 * 359.76079 * 8 7 6 10 10 H 0.96996 * 126.39517 * 180.26867 * 9 8 7 11 11 C 1.50692 * 109.47067 * 240.00348 * 2 1 3 12 12 O 1.21279 * 119.99906 * 263.00498 * 11 2 1 13 13 N 1.34780 * 120.00236 * 83.00738 * 11 2 1 14 14 C 1.46933 * 120.70060 * 4.62833 * 13 11 2 15 15 C 1.52725 * 109.14742 * 234.15640 * 14 13 11 16 16 C 1.53166 * 109.35712 * 304.97748 * 15 14 13 17 17 C 1.52224 * 109.68775 * 60.02166 * 16 15 14 18 18 C 1.54495 * 110.28039 * 63.07166 * 17 16 15 19 19 C 1.55026 * 101.53003 * 153.37904 * 18 17 16 20 20 N 1.47479 * 104.90346 * 323.64653 * 19 18 17 21 21 C 1.36935 * 125.66174 * 204.02988 * 20 19 18 22 22 H 1.08005 * 120.00191 * 179.97438 * 21 20 19 23 23 C 1.38809 * 120.00169 * 359.97438 * 21 20 19 24 24 N 1.31622 * 119.99909 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00263 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46839 * 60.00263 * 25 23 21 27 27 H 1.48501 * 109.47143 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47191 * 300.00117 * 25 23 21 29 29 C 1.47189 * 108.67796 * 24.00898 * 20 19 18 30 30 C 1.47070 * 120.70302 * 184.89821 * 13 11 2 31 31 H 1.09000 * 109.47036 * 186.00462 * 1 2 3 32 32 H 1.08995 * 109.47434 * 306.00280 * 1 2 3 33 33 H 1.09001 * 109.47012 * 66.00396 * 1 2 3 34 34 H 1.09006 * 109.47120 * 55.00340 * 4 2 1 35 35 H 1.09001 * 109.47183 * 175.00356 * 4 2 1 36 36 H 1.08007 * 125.99399 * 359.97103 * 6 5 4 37 37 H 1.08004 * 125.65137 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.56999 * 354.02292 * 14 13 11 39 39 H 1.08995 * 109.56777 * 114.38434 * 14 13 11 40 40 H 1.09000 * 109.57536 * 184.94528 * 15 14 13 41 41 H 1.08997 * 109.38975 * 64.89245 * 15 14 13 42 42 H 1.08997 * 109.43354 * 299.95661 * 16 15 14 43 43 H 1.08997 * 109.39682 * 180.02562 * 16 15 14 44 44 H 1.08998 * 111.01214 * 271.44545 * 18 17 16 45 45 H 1.09001 * 111.00942 * 35.31579 * 18 17 16 46 46 H 1.09003 * 110.34687 * 204.79043 * 19 18 17 47 47 H 1.08996 * 110.44402 * 82.55175 * 19 18 17 48 48 H 0.97004 * 120.00151 * 180.02562 * 24 23 21 49 49 H 1.08995 * 109.90928 * 239.12064 * 29 20 19 50 50 H 1.08999 * 109.90747 * 117.84790 * 29 20 19 51 51 H 1.08996 * 109.57694 * 247.37186 * 30 13 11 52 52 H 1.09007 * 109.57075 * 7.74659 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 6 0.4666 -0.0214 3.1303 7 7 0.5106 0.8295 4.1662 8 6 1.6678 1.4326 4.1789 9 7 2.4055 0.9757 3.1441 10 1 3.3078 1.2487 2.9158 11 6 2.0324 -0.7103 -1.2304 12 8 2.3551 -1.8777 -1.1674 13 7 2.1230 -0.0483 -2.4010 14 6 1.8331 1.3903 -2.4736 15 6 0.7758 1.6346 -3.5483 16 6 1.2519 1.0344 -4.8746 17 6 1.4699 -0.4632 -4.7108 18 6 0.1366 -1.1640 -4.3670 19 6 0.3861 -2.5917 -4.9172 20 7 1.1802 -2.3922 -6.1437 21 6 1.2521 -3.2623 -7.1987 22 1 1.8648 -3.0230 -8.0553 23 6 0.5374 -4.4518 -7.1671 24 7 -0.2089 -4.7437 -6.1230 25 14 0.6349 -5.6385 -8.6065 26 1 2.0428 -6.0708 -8.7972 27 1 -0.2133 -6.8252 -8.3280 28 1 0.1532 -4.9633 -9.8382 29 6 1.8824 -1.1022 -6.0460 30 6 2.5085 -0.7518 -3.6336 31 1 -0.3633 -1.0220 0.1075 32 1 -0.3634 0.6040 0.8313 33 1 -0.3633 0.4179 -0.9389 34 1 1.6054 -1.7198 1.2951 35 1 3.1264 -0.7994 1.2056 36 1 -0.3653 -0.6578 2.8667 37 1 1.9848 2.1713 4.9003 38 1 1.4588 1.7364 -1.5102 39 1 2.7426 1.9335 -2.7304 40 1 0.6191 2.7065 -3.6694 41 1 -0.1596 1.1615 -3.2498 42 1 2.1883 1.5069 -5.1711 43 1 0.4980 1.2088 -5.6422 44 1 -0.0283 -1.1834 -3.2897 45 1 -0.6989 -0.6877 -4.8801 46 1 -0.5607 -3.0777 -5.1533 47 1 0.9465 -3.1854 -4.1951 48 1 -0.7080 -5.5752 -6.1007 49 1 1.5885 -0.4561 -6.8732 50 1 2.9601 -1.2642 -6.0628 51 1 3.4855 -0.3998 -3.9648 52 1 2.5498 -1.8245 -3.4442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054212532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:06 Heat of formation + Delta-G solvation = 21.373456 kcal Electronic energy + Delta-G solvation = -31860.339305 eV Core-core repulsion = 27860.138010 eV Total energy + Delta-G solvation = -4000.201295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.97098 -41.73855 -39.91451 -37.34997 -36.09897 -34.73438 -33.37479 -33.23303 -31.75958 -30.77903 -30.24033 -27.64535 -27.47782 -26.82028 -25.41313 -23.91590 -23.01182 -22.34835 -22.07657 -21.68302 -20.15169 -19.39544 -18.88667 -18.62700 -17.98928 -17.06336 -16.92501 -16.51403 -16.06969 -15.87088 -15.76010 -15.45146 -15.20966 -15.00205 -14.78041 -14.46611 -14.31320 -14.16499 -14.01637 -13.86226 -13.59670 -13.50118 -13.36671 -13.34178 -13.09623 -12.94897 -12.71656 -12.42005 -12.30521 -12.18840 -12.10223 -11.99316 -11.89610 -11.77209 -11.46769 -11.31519 -11.04386 -10.93631 -10.89856 -10.75088 -10.59855 -9.59130 -9.27699 -8.90443 -7.78004 -5.23269 1.11577 1.43101 1.47429 1.53790 1.61452 1.99028 2.26009 2.34257 2.48246 3.30880 3.40961 3.63994 3.67979 3.76630 3.81494 3.89061 3.95847 3.98129 4.14124 4.17184 4.23791 4.30020 4.37541 4.41527 4.54304 4.59973 4.66596 4.67283 4.72914 4.75855 4.80142 4.83779 4.84671 4.89657 4.93064 5.01636 5.04026 5.08480 5.14263 5.22805 5.27465 5.36732 5.43419 5.48296 5.53672 5.55711 5.61166 5.79697 5.80946 6.27907 6.47780 6.62192 7.08306 7.18019 7.20816 7.77198 8.42086 9.23734 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.002533 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.011107 B =11052.400651 C =11853.172266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.122 0.878 4 C -0.021 4.021 5 C -0.013 4.013 6 C -0.041 4.041 7 N -0.539 5.539 8 C 0.192 3.808 9 N -0.556 5.556 10 H 0.435 0.565 11 C 0.510 3.490 12 O -0.589 6.589 13 N -0.603 5.603 14 C 0.100 3.900 15 C -0.129 4.129 16 C -0.097 4.097 17 C -0.068 4.068 18 C -0.107 4.107 19 C 0.162 3.838 20 N -0.626 5.626 21 C -0.239 4.239 22 H 0.083 0.917 23 C -0.072 4.072 24 N -0.952 5.952 25 Si 0.983 3.017 26 H -0.279 1.279 27 H -0.295 1.295 28 H -0.272 1.272 29 C 0.141 3.859 30 C 0.138 3.862 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.164 0.836 37 H 0.244 0.756 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.065 0.935 47 H -0.032 1.032 48 H 0.245 0.755 49 H 0.038 0.962 50 H 0.020 0.980 51 H 0.077 0.923 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 22.615 16.625 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.140 0.860 4 C -0.060 4.060 5 C -0.130 4.130 6 C -0.188 4.188 7 N -0.258 5.258 8 C -0.092 4.092 9 N -0.161 5.161 10 H 0.275 0.725 11 C 0.299 3.701 12 O -0.470 6.470 13 N -0.334 5.334 14 C -0.021 4.021 15 C -0.167 4.167 16 C -0.135 4.135 17 C -0.070 4.070 18 C -0.145 4.145 19 C 0.037 3.963 20 N -0.352 5.352 21 C -0.368 4.368 22 H 0.101 0.899 23 C -0.265 4.265 24 N -0.602 5.602 25 Si 0.810 3.190 26 H -0.205 1.205 27 H -0.221 1.221 28 H -0.198 1.198 29 C 0.016 3.984 30 C 0.015 3.985 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.182 0.818 37 H 0.260 0.740 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.083 0.917 47 H -0.014 1.014 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.038 0.962 51 H 0.095 0.905 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.453 21.946 17.158 28.386 hybrid contribution 0.962 -1.769 -1.554 2.544 sum 6.415 20.177 15.604 26.301 Atomic orbital electron populations 1.21801 0.91656 1.02730 1.03562 1.21240 0.98522 1.01008 0.90126 0.86029 1.19733 1.01471 0.97354 0.87482 1.20972 0.93957 0.98860 0.99177 1.22229 0.98390 1.02932 0.95242 1.70278 1.21690 1.11534 1.22329 1.25694 0.87787 1.02122 0.93591 1.43265 1.16991 1.32215 1.23586 0.72466 1.21283 0.76721 0.86531 0.85524 1.90725 1.51207 1.19176 1.85842 1.48231 1.67384 1.10921 1.06913 1.22052 1.00051 0.78447 1.01548 1.21872 0.98382 1.02699 0.93777 1.21375 1.02442 0.91046 0.98589 1.21259 0.94893 0.97209 0.93597 1.22674 0.96760 0.95972 0.99128 1.21593 0.95928 0.93194 0.85625 1.44863 1.53536 1.19179 1.17583 1.19457 1.22990 0.98301 0.96024 0.89873 1.25712 0.99974 1.00038 1.00728 1.70108 1.34597 1.24721 1.30768 0.85089 0.77344 0.77889 0.78637 1.20522 1.22138 1.19779 1.21445 0.94660 0.86719 0.95557 1.21205 0.96843 0.96760 0.83729 0.93366 0.89553 0.91499 0.90365 0.90522 0.81842 0.73961 0.87213 0.89038 0.87243 0.92250 0.90003 0.91615 0.92175 0.91704 0.91707 1.01400 0.94522 0.94449 0.96182 0.90493 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.50 71.98 0.61 -1.86 16 2 C -0.09 -1.55 1.86 -11.54 -0.02 -1.57 16 3 H 0.12 1.35 6.38 -2.39 -0.02 1.34 16 4 C -0.02 -0.39 4.67 29.85 0.14 -0.25 16 5 C -0.01 -0.21 6.09 40.95 0.25 0.04 16 6 C -0.04 -0.81 10.24 83.52 0.86 0.04 16 7 N -0.54 -11.02 11.25 -200.31 -2.25 -13.28 16 8 C 0.19 2.30 13.04 180.26 2.35 4.65 16 9 N -0.56 -5.64 6.15 -186.49 -1.15 -6.79 16 10 H 0.43 1.49 8.96 -92.71 -0.83 0.66 16 11 C 0.51 14.02 6.82 87.65 0.60 14.62 16 12 O -0.59 -22.97 15.62 -3.03 -0.05 -23.01 16 13 N -0.60 -14.81 2.52 -820.96 -2.07 -16.88 16 14 C 0.10 1.41 6.02 86.21 0.52 1.93 16 15 C -0.13 -1.98 5.89 30.56 0.18 -1.80 16 16 C -0.10 -2.12 4.53 30.39 0.14 -1.98 16 17 C -0.07 -2.22 0.56 -51.91 -0.03 -2.25 16 18 C -0.11 -4.18 4.91 31.80 0.16 -4.02 16 19 C 0.16 8.65 5.56 86.89 0.48 9.13 16 20 N -0.63 -33.72 3.40 -692.49 -2.36 -36.07 16 21 C -0.24 -13.92 10.28 84.03 0.86 -13.05 16 22 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 23 C -0.07 -4.30 5.49 84.86 0.47 -3.83 16 24 N -0.95 -60.14 10.09 21.65 0.22 -59.92 16 25 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 26 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 29 C 0.14 5.85 6.43 86.47 0.56 6.40 16 30 C 0.14 4.45 4.95 86.07 0.43 4.88 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.30 6.59 -2.39 -0.02 1.29 16 33 H 0.07 1.13 7.75 -2.39 -0.02 1.11 16 34 H 0.08 1.81 8.04 -2.38 -0.02 1.79 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.24 0.68 8.06 -2.91 -0.02 0.66 16 38 H 0.11 0.99 5.20 -2.39 -0.01 0.98 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 1.09 7.32 -2.39 -0.02 1.07 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.07 1.51 8.11 -2.39 -0.02 1.50 16 44 H 0.06 2.27 7.60 -2.39 -0.02 2.25 16 45 H 0.06 2.45 8.01 -2.39 -0.02 2.43 16 46 H 0.06 3.95 5.88 -2.39 -0.01 3.93 16 47 H -0.03 -1.95 7.66 -2.39 -0.02 -1.97 16 48 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 49 H 0.04 1.47 7.79 -2.39 -0.02 1.45 16 50 H 0.02 0.83 7.80 -2.39 -0.02 0.81 16 51 H 0.08 2.21 8.11 -2.39 -0.02 2.19 16 52 H 0.05 2.02 6.26 -2.38 -0.01 2.00 16 Total: -1.00 -84.89 396.17 3.00 -81.88 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.09 Total: 13.51 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 8.54 Total: 11.07 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -7.61 Total: -132.93 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -84.89 3.00 -81.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054212532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.258 kcal (2) G-P(sol) polarization free energy of solvation -84.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds