Wall clock time and date at job start Wed Apr 1 2020 05:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 O 1.21283 * 120.00019 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00071 * 179.97438 * 5 4 2 8 8 C 1.46935 * 120.69971 * 359.72861 * 7 5 4 9 9 C 1.52719 * 109.14796 * 234.15382 * 8 7 5 10 10 C 1.53156 * 109.36161 * 304.97712 * 9 8 7 11 11 C 1.52233 * 109.68595 * 60.02194 * 10 9 8 12 12 C 1.54493 * 110.27807 * 63.07288 * 11 10 9 13 13 C 1.55024 * 101.53016 * 153.37984 * 12 11 10 14 14 N 1.47487 * 104.90372 * 323.64676 * 13 12 11 15 15 C 1.36932 * 125.66318 * 204.02768 * 14 13 12 16 16 H 1.08003 * 120.00015 * 179.97438 * 15 14 13 17 17 C 1.38808 * 119.99889 * 359.97438 * 15 14 13 18 18 N 1.31620 * 120.00439 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00039 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47075 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47161 * 119.99637 * 19 17 15 22 22 H 1.48500 * 109.46995 * 239.99817 * 19 17 15 23 23 C 1.47188 * 108.67427 * 24.00920 * 14 13 12 24 24 C 1.47073 * 120.70203 * 180.02562 * 7 5 4 25 25 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 26 26 C 1.34947 * 126.03203 * 35.00109 * 25 2 1 27 27 C 1.35315 * 107.74256 * 179.97438 * 26 25 2 28 28 C 1.39874 * 107.92452 * 359.97438 * 27 26 25 29 29 N 1.30839 * 108.19596 * 359.74163 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 34 34 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 35 35 H 1.08998 * 109.56708 * 354.02501 * 8 7 5 36 36 H 1.09004 * 109.56917 * 114.38133 * 8 7 5 37 37 H 1.09009 * 109.57447 * 184.94559 * 9 8 7 38 38 H 1.08997 * 109.35745 * 64.87756 * 9 8 7 39 39 H 1.08998 * 109.43459 * 299.96060 * 10 9 8 40 40 H 1.09003 * 109.40124 * 180.02562 * 10 9 8 41 41 H 1.09001 * 111.01578 * 271.44570 * 12 11 10 42 42 H 1.09003 * 111.01299 * 35.31716 * 12 11 10 43 43 H 1.08997 * 110.35192 * 204.78873 * 13 12 11 44 44 H 1.09001 * 110.44137 * 82.54974 * 13 12 11 45 45 H 0.96995 * 120.00374 * 180.02562 * 18 17 15 46 46 H 1.08999 * 109.90569 * 239.12044 * 23 14 13 47 47 H 1.08998 * 109.91139 * 117.84964 * 23 14 13 48 48 H 1.09003 * 109.56980 * 247.37187 * 24 7 5 49 49 H 1.08989 * 109.57494 * 7.62124 * 24 7 5 50 50 H 1.07995 * 126.13252 * 359.97438 * 26 25 2 51 51 H 1.08001 * 126.03959 * 179.97438 * 27 26 25 52 52 H 1.07996 * 125.90012 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9853 -0.3912 -3.7002 8 6 2.7540 -1.6338 -3.8551 9 6 4.0009 -1.3506 -4.6902 10 6 3.5875 -0.7123 -6.0196 11 6 2.8494 0.5924 -5.7544 12 6 3.7846 1.6042 -5.0555 13 6 3.1652 2.9550 -5.4969 14 7 2.7116 2.7296 -6.8821 15 6 2.5330 3.7000 -7.8316 16 1 2.1965 3.4310 -8.8220 17 6 2.7847 5.0293 -7.5212 18 7 3.1944 5.3572 -6.3141 19 14 2.5405 6.3532 -8.8163 20 1 2.0776 5.7286 -10.0815 21 1 1.5237 7.3267 -8.3434 22 1 3.8265 7.0567 -9.0536 23 6 2.4830 1.2883 -7.0746 24 6 1.6047 0.3564 -4.9082 25 7 2.0184 -0.6906 1.1961 26 6 1.4403 -1.7559 1.7893 27 6 2.1968 -2.0930 2.8594 28 6 3.2746 -1.2036 2.9219 29 7 3.1718 -0.3662 1.9219 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 3.1264 -0.7994 -1.2057 34 1 1.6055 -1.7197 -1.2953 35 1 3.0502 -2.0045 -2.8738 36 1 2.1421 -2.3812 -4.3602 37 1 4.5306 -2.2835 -4.8836 38 1 4.6529 -0.6675 -4.1458 39 1 2.9335 -1.3952 -6.5619 40 1 4.4770 -0.5103 -6.6164 41 1 3.7435 1.4907 -3.9722 42 1 4.8077 1.5061 -5.4185 43 1 3.9165 3.7441 -5.4677 44 1 2.3202 3.2130 -4.8585 45 1 3.3699 6.2861 -6.0971 46 1 3.1175 0.9161 -7.8789 47 1 1.4346 1.1071 -7.3112 48 1 0.8782 -0.2204 -5.4808 49 1 1.1680 1.3134 -4.6230 50 1 0.5358 -2.2508 1.4678 51 1 2.0029 -2.9053 3.5442 52 1 4.0588 -1.2102 3.6644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054225370.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:45 Heat of formation + Delta-G solvation = 72.780956 kcal Electronic energy + Delta-G solvation = -31713.125110 eV Core-core repulsion = 27715.153011 eV Total energy + Delta-G solvation = -3997.972099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -41.43683 -40.52409 -38.61834 -36.03088 -35.44702 -33.17358 -31.98749 -30.71113 -30.16702 -29.78855 -28.66812 -28.23988 -25.66589 -25.36583 -23.76931 -23.35394 -21.92570 -21.23709 -20.48570 -20.09005 -19.14362 -18.18379 -17.81958 -16.79840 -16.52036 -16.09593 -15.73517 -15.12126 -14.96243 -14.82540 -14.46173 -14.19349 -14.02289 -13.86684 -13.71078 -13.29139 -13.26844 -13.06554 -13.00393 -12.84625 -12.50484 -12.24337 -12.09905 -11.81834 -11.67673 -11.60591 -11.43882 -11.13803 -11.05767 -10.88067 -10.82466 -10.80824 -10.74524 -10.14823 -10.04702 -9.85187 -9.74376 -9.68395 -9.58568 -9.40992 -8.80114 -8.60237 -8.54487 -6.78332 -5.60042 -3.02144 1.71493 2.21939 2.58137 2.67720 3.04630 3.42272 3.47190 3.50144 4.21343 4.39519 4.40672 4.51743 4.62431 4.68968 4.76820 4.89561 4.90840 4.98620 5.12381 5.15605 5.16902 5.27788 5.35825 5.42367 5.48768 5.50548 5.54280 5.56883 5.66881 5.71692 5.79952 5.81697 5.86467 5.96221 5.97469 6.02687 6.10769 6.27933 6.30936 6.39585 6.46966 6.49109 6.61740 6.71627 6.80524 6.84386 6.93177 7.41106 7.55684 7.61324 7.67862 7.92259 8.15823 8.41423 9.26558 9.87657 10.53038 11.43430 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.002579 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.079958 B =10852.284229 C =11707.369796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.174 3.826 3 H 0.114 0.886 4 C -0.151 4.151 5 C 0.519 3.481 6 O -0.530 6.530 7 N -0.604 5.604 8 C 0.107 3.893 9 C -0.135 4.135 10 C -0.101 4.101 11 C -0.084 4.084 12 C -0.127 4.127 13 C 0.154 3.846 14 N -0.604 5.604 15 C -0.222 4.222 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.149 3.851 24 C 0.131 3.869 25 N -0.364 5.364 26 C 0.054 3.946 27 C -0.279 4.279 28 C 0.040 3.960 29 N -0.294 5.294 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.103 0.897 44 H 0.013 0.987 45 H 0.251 0.749 46 H 0.026 0.974 47 H 0.021 0.979 48 H 0.062 0.938 49 H 0.101 0.899 50 H 0.170 0.830 51 H 0.145 0.855 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 -21.060 13.832 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 H 0.132 0.868 4 C -0.192 4.192 5 C 0.306 3.694 6 O -0.407 6.407 7 N -0.337 5.337 8 C -0.016 4.016 9 C -0.173 4.173 10 C -0.139 4.139 11 C -0.086 4.086 12 C -0.166 4.166 13 C 0.029 3.971 14 N -0.330 5.330 15 C -0.350 4.350 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.568 5.568 19 Si 0.744 3.256 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.023 3.977 24 C 0.010 3.990 25 N -0.147 5.147 26 C -0.092 4.092 27 C -0.309 4.309 28 C -0.146 4.146 29 N -0.115 5.115 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.038 0.962 48 H 0.080 0.920 49 H 0.119 0.881 50 H 0.188 0.812 51 H 0.163 0.837 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.721 -19.193 13.143 23.325 hybrid contribution -0.407 -0.244 -0.230 0.527 sum -2.128 -19.437 12.913 23.432 Atomic orbital electron populations 1.22321 0.92079 1.02805 1.05308 1.20988 0.95325 0.97172 0.79322 0.86848 1.22083 1.03942 1.00504 0.92682 1.20131 0.79720 0.85455 0.84062 1.90736 1.40067 1.23976 1.85895 1.48125 1.54638 1.24788 1.06148 1.21648 0.93135 0.86043 1.00775 1.21857 0.97068 1.01227 0.97160 1.21386 1.00264 0.96003 0.96260 1.21338 0.95447 0.95017 0.96758 1.22926 0.97822 0.97762 0.98094 1.21921 0.98037 0.93232 0.83891 1.44563 1.78481 1.00162 1.09773 1.19099 1.37936 0.86164 0.91840 0.90518 1.24794 1.01963 0.97092 0.96867 1.69831 1.52171 1.16429 1.18395 0.86021 0.77300 0.81924 0.80388 1.20578 1.21785 1.21812 1.21176 0.97249 0.86242 0.93057 1.21559 0.95901 0.97694 0.83873 1.49002 1.19082 1.24009 1.22572 1.22503 0.99889 0.91270 0.95553 1.21500 0.99514 1.06583 1.03266 1.23900 0.99370 0.94051 0.97277 1.77440 1.02661 1.23783 1.07627 0.91588 0.92267 0.87733 0.88081 0.88549 0.90302 0.91303 0.90947 0.91142 0.92197 0.91358 0.92832 0.92399 0.87967 0.96859 0.93824 0.95579 0.96158 0.91955 0.88087 0.81249 0.83742 0.80201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.57 37.16 0.32 -1.28 16 2 C 0.17 1.90 3.05 -67.93 -0.21 1.69 16 3 H 0.11 1.51 7.95 -51.93 -0.41 1.09 16 4 C -0.15 -1.51 3.85 -27.88 -0.11 -1.61 16 5 C 0.52 7.00 7.42 -10.99 -0.08 6.92 16 6 O -0.53 -9.18 13.39 5.56 0.07 -9.10 16 7 N -0.60 -7.76 2.53 -173.44 -0.44 -8.20 16 8 C 0.11 1.00 6.29 -3.95 -0.02 0.97 16 9 C -0.13 -1.38 5.89 -26.79 -0.16 -1.53 16 10 C -0.10 -1.29 4.53 -27.04 -0.12 -1.41 16 11 C -0.08 -1.40 0.56 -154.10 -0.09 -1.49 16 12 C -0.13 -2.47 4.91 -24.88 -0.12 -2.59 16 13 C 0.15 3.86 5.56 -2.43 -0.01 3.85 16 14 N -0.60 -15.61 3.40 -170.23 -0.58 -16.19 16 15 C -0.22 -6.27 10.28 -15.06 -0.15 -6.43 16 16 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 17 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 18 N -0.92 -27.57 10.09 55.49 0.56 -27.01 16 19 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C 0.15 3.06 6.42 -3.32 -0.02 3.04 16 24 C 0.13 2.08 4.96 -4.06 -0.02 2.06 16 25 N -0.36 -3.99 3.53 -54.86 -0.19 -4.18 16 26 C 0.05 0.47 10.59 -17.22 -0.18 0.29 16 27 C -0.28 -2.38 10.80 -40.01 -0.43 -2.82 16 28 C 0.04 0.40 12.03 -17.36 -0.21 0.19 16 29 N -0.29 -3.73 12.58 30.63 0.39 -3.34 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.43 7.16 -51.93 -0.37 0.06 16 32 H 0.10 1.22 5.95 -51.93 -0.31 0.91 16 33 H 0.10 1.02 7.69 -51.93 -0.40 0.62 16 34 H 0.10 0.73 7.95 -51.93 -0.41 0.32 16 35 H 0.08 0.58 5.94 -51.93 -0.31 0.27 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 38 H 0.07 0.82 7.32 -51.93 -0.38 0.44 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.92 8.11 -51.93 -0.42 0.49 16 41 H 0.05 1.01 7.60 -51.93 -0.39 0.61 16 42 H 0.06 1.11 8.01 -51.93 -0.42 0.70 16 43 H 0.10 2.91 5.88 -51.93 -0.31 2.61 16 44 H 0.01 0.37 7.67 -51.93 -0.40 -0.03 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.03 0.53 7.79 -51.93 -0.40 0.13 16 47 H 0.02 0.42 7.80 -51.93 -0.40 0.01 16 48 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 49 H 0.10 2.00 6.23 -51.94 -0.32 1.67 16 50 H 0.17 0.95 7.26 -52.49 -0.38 0.57 16 51 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 52 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -33.97 396.82 -9.50 -43.48 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.55 Total: 1.69 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.72 Total: -0.59 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.27 Total: -58.93 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.97 -9.50 -43.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054225370.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.256 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds