Wall clock time and date at job start Wed Apr 1 2020 04:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.46929 * 2 1 4 4 C 1.50699 * 109.47731 * 240.00448 * 2 1 3 5 5 O 1.21288 * 119.99212 * 325.33265 * 4 2 1 6 6 N 1.34774 * 120.00547 * 145.61084 * 4 2 1 7 7 C 1.46933 * 120.70040 * 5.14009 * 6 4 2 8 8 C 1.53182 * 108.93214 * 125.84361 * 7 6 4 9 9 C 1.53177 * 109.27354 * 55.21497 * 8 7 6 10 10 C 1.52238 * 109.64666 * 299.82644 * 9 8 7 11 11 C 1.54478 * 110.28978 * 182.00153 * 10 9 8 12 12 C 1.55029 * 101.53132 * 153.34429 * 11 10 9 13 13 N 1.47489 * 104.90516 * 323.65758 * 12 11 10 14 14 C 1.36932 * 125.66184 * 204.02642 * 13 12 11 15 15 H 1.08000 * 119.99995 * 179.97438 * 14 13 12 16 16 C 1.38809 * 120.00401 * 359.97438 * 14 13 12 17 17 N 1.31628 * 119.99838 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00431 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47380 * 59.99494 * 18 16 14 20 20 H 1.48504 * 109.47427 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47032 * 299.99420 * 18 16 14 22 22 C 1.47186 * 108.67425 * 24.01067 * 13 12 11 23 23 C 1.47074 * 120.70347 * 184.86042 * 6 4 2 24 24 C 1.50694 * 109.47130 * 119.99691 * 2 1 3 25 25 C 1.39880 * 126.03759 * 59.69763 * 24 2 1 26 26 N 1.30835 * 108.19801 * 179.81751 * 25 24 2 27 27 N 1.40078 * 108.21024 * 0.43746 * 26 25 24 28 28 C 1.46503 * 126.03968 * 179.73769 * 27 26 25 29 29 C 1.34952 * 107.92619 * 359.71895 * 27 26 25 30 30 H 1.08991 * 109.47381 * 304.99130 * 1 2 3 31 31 H 1.09004 * 109.46719 * 64.99280 * 1 2 3 32 32 H 1.09007 * 109.46793 * 184.98599 * 1 2 3 33 33 H 1.08997 * 109.56250 * 245.67827 * 7 6 4 34 34 H 1.09002 * 109.56328 * 5.90131 * 7 6 4 35 35 H 1.08996 * 109.51103 * 175.15566 * 8 7 6 36 36 H 1.08999 * 109.50323 * 295.23581 * 8 7 6 37 37 H 1.08996 * 109.43730 * 59.88057 * 9 8 7 38 38 H 1.08999 * 109.43777 * 179.77681 * 9 8 7 39 39 H 1.08997 * 111.01787 * 271.40814 * 11 10 9 40 40 H 1.08999 * 111.01457 * 35.28339 * 11 10 9 41 41 H 1.08992 * 110.35633 * 204.79887 * 12 11 10 42 42 H 1.09004 * 110.44197 * 82.56012 * 12 11 10 43 43 H 0.96994 * 120.00119 * 180.02562 * 17 16 14 44 44 H 1.08994 * 109.90924 * 239.09967 * 22 13 12 45 45 H 1.08998 * 109.90693 * 117.83218 * 22 13 12 46 46 H 1.09000 * 109.57892 * 352.26224 * 23 6 4 47 47 H 1.09002 * 109.57440 * 112.65177 * 23 6 4 48 48 H 1.07994 * 125.89392 * 359.97438 * 25 24 2 49 49 H 1.08995 * 109.47245 * 269.97754 * 28 27 26 50 50 H 1.09010 * 109.46780 * 29.98105 * 28 27 26 51 51 H 1.09000 * 109.47322 * 149.97125 * 28 27 26 52 52 H 1.07993 * 126.12653 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0325 -0.7103 -1.2305 5 8 1.4201 -1.6575 -1.6763 6 7 3.1652 -0.2965 -1.8322 7 6 3.9822 0.7716 -1.2400 8 6 5.4201 0.2677 -1.0819 9 6 5.9360 -0.2225 -2.4383 10 6 5.0560 -1.3588 -2.9404 11 6 5.5928 -1.8984 -4.2846 12 6 5.0776 -3.3603 -4.2597 13 7 5.1787 -3.7742 -2.8477 14 6 5.2864 -5.0636 -2.3995 15 1 5.3554 -5.2631 -1.3403 16 6 5.3070 -6.1143 -3.3064 17 7 5.2224 -5.8712 -4.5972 18 14 5.4548 -7.8731 -2.6950 19 1 4.3058 -8.1871 -1.8081 20 1 5.4534 -8.8019 -3.8538 21 1 6.7222 -8.0288 -1.9369 22 6 5.1448 -2.5711 -2.0004 23 6 3.6129 -0.9086 -3.0923 24 6 2.0323 -0.7103 1.2304 25 6 1.7685 -2.0391 1.5789 26 7 2.3776 -2.2939 2.7085 27 7 3.0408 -1.1308 3.1203 28 6 3.8405 -0.9801 4.3385 29 6 2.8134 -0.1738 2.1964 30 1 -0.3634 0.5893 0.8418 31 1 -0.3633 0.4345 -0.9314 32 1 -0.3633 -1.0239 0.0893 33 1 3.9710 1.6443 -1.8929 34 1 3.5789 1.0409 -0.2638 35 1 6.0530 1.0796 -0.7238 36 1 5.4413 -0.5534 -0.3654 37 1 5.9114 0.5990 -3.1542 38 1 6.9607 -0.5781 -2.3297 39 1 5.1679 -1.3485 -5.1243 40 1 6.6821 -1.8683 -4.3109 41 1 5.7049 -3.9941 -4.8864 42 1 4.0411 -3.4045 -4.5945 43 1 5.2364 -6.6054 -5.2309 44 1 6.0547 -2.5120 -1.4033 45 1 4.2715 -2.6005 -1.3489 46 1 2.9855 -1.7695 -3.3233 47 1 3.5444 -0.1776 -3.8980 48 1 1.1682 -2.7351 1.0120 49 1 3.2000 -0.6459 5.1546 50 1 4.2904 -1.9383 4.5986 51 1 4.6263 -0.2441 4.1685 52 1 3.1881 0.8387 2.2230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054248615.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:33 Heat of formation + Delta-G solvation = 74.381773 kcal Electronic energy + Delta-G solvation = -32802.766853 eV Core-core repulsion = 28804.864171 eV Total energy + Delta-G solvation = -3997.902682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.42496 -40.21476 -38.30935 -35.75580 -34.44613 -33.04298 -32.51797 -31.86841 -30.00118 -29.50733 -28.30045 -26.65336 -26.00366 -25.44570 -23.99624 -23.33464 -21.84128 -21.18985 -20.75250 -20.03357 -18.81727 -17.93874 -17.28827 -16.76487 -16.58815 -15.72124 -15.42600 -15.21987 -14.81230 -14.45664 -14.37509 -14.23616 -13.81387 -13.65641 -13.33976 -13.14929 -13.00985 -12.95996 -12.81921 -12.75060 -12.38107 -12.28345 -12.04466 -11.89520 -11.68798 -11.49070 -11.38367 -11.00229 -10.98672 -10.79251 -10.72763 -10.66070 -10.50195 -10.08653 -9.95592 -9.76739 -9.62091 -9.54172 -9.44906 -9.31644 -8.51653 -8.41535 -8.29734 -6.68306 -5.52564 -2.92535 1.79358 2.42940 2.67968 3.01806 3.25388 3.48988 3.52879 3.54731 4.37932 4.59343 4.60614 4.66071 4.80610 4.89599 4.94154 4.98993 5.05957 5.09835 5.18301 5.20714 5.26874 5.35863 5.38597 5.52234 5.62166 5.65003 5.67004 5.70726 5.74456 5.85070 5.89621 5.95200 5.97579 6.03343 6.09299 6.23525 6.26874 6.37170 6.40736 6.50430 6.61861 6.64850 6.73870 6.77565 6.89235 6.95722 7.06231 7.63988 7.65957 7.69331 7.74900 7.97132 8.48819 8.49660 9.35584 9.96658 10.62504 11.51579 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009725 B = 0.004120 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.574820 B = 6794.208236 C = 7946.305717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.028 4.028 3 H 0.091 0.909 4 C 0.522 3.478 5 O -0.528 6.528 6 N -0.607 5.607 7 C 0.110 3.890 8 C -0.135 4.135 9 C -0.100 4.100 10 C -0.085 4.085 11 C -0.134 4.134 12 C 0.153 3.847 13 N -0.602 5.602 14 C -0.215 4.215 15 H 0.073 0.927 16 C -0.012 4.012 17 N -0.924 5.924 18 Si 0.911 3.089 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.287 1.287 22 C 0.157 3.843 23 C 0.131 3.869 24 C -0.226 4.226 25 C 0.073 3.927 26 N -0.293 5.293 27 N -0.378 5.378 28 C 0.103 3.897 29 C 0.059 3.941 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.011 0.989 43 H 0.251 0.749 44 H 0.015 0.985 45 H 0.021 0.979 46 H 0.099 0.901 47 H 0.059 0.941 48 H 0.184 0.816 49 H 0.072 0.928 50 H 0.089 0.911 51 H 0.086 0.914 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 21.241 12.334 24.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.050 4.050 3 H 0.109 0.891 4 C 0.309 3.691 5 O -0.403 6.403 6 N -0.340 5.340 7 C -0.013 4.013 8 C -0.173 4.173 9 C -0.138 4.138 10 C -0.086 4.086 11 C -0.173 4.173 12 C 0.028 3.972 13 N -0.327 5.327 14 C -0.344 4.344 15 H 0.091 0.909 16 C -0.207 4.207 17 N -0.573 5.573 18 Si 0.742 3.258 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.213 1.213 22 C 0.031 3.969 23 C 0.010 3.990 24 C -0.238 4.238 25 C -0.114 4.114 26 N -0.114 5.114 27 N -0.160 5.160 28 C -0.038 4.038 29 C -0.087 4.087 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.122 0.878 42 H 0.029 0.971 43 H 0.061 0.939 44 H 0.033 0.967 45 H 0.039 0.961 46 H 0.117 0.883 47 H 0.077 0.923 48 H 0.201 0.799 49 H 0.091 0.909 50 H 0.108 0.892 51 H 0.104 0.896 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.818 19.628 13.066 23.747 hybrid contribution 0.105 -0.224 -0.212 0.326 sum -2.713 19.405 12.854 23.433 Atomic orbital electron populations 1.21626 0.92176 1.03334 1.01524 1.19558 0.97387 0.98472 0.89631 0.89089 1.20501 0.80357 0.83878 0.84331 1.90730 1.57314 1.27028 1.65252 1.48096 1.23333 1.37755 1.24864 1.21694 0.91462 0.89739 0.98438 1.21933 0.95310 1.01172 0.98867 1.21384 0.99172 0.97499 0.95724 1.21259 0.94101 0.95244 0.97985 1.22985 1.00050 1.00075 0.94223 1.21932 0.98539 0.89366 0.87317 1.44511 1.86044 1.00709 1.01470 1.18994 1.41985 0.81385 0.92016 0.90939 1.24726 1.02718 0.97806 0.95411 1.69789 1.57892 1.29625 0.99991 0.86193 0.77863 0.84479 0.77256 1.21267 1.21583 1.21337 1.21147 0.97235 0.85932 0.92615 1.21396 0.95281 0.98461 0.83907 1.19548 1.09130 0.95789 0.99344 1.23855 0.98312 0.95845 0.93390 1.77453 1.13074 1.05302 1.15558 1.48441 1.40255 1.08274 1.18982 1.21827 0.94265 1.04219 0.83522 1.22196 1.00083 0.95575 0.90869 0.92119 0.92332 0.91302 0.91721 0.90228 0.91303 0.91289 0.92183 0.91625 0.92342 0.91911 0.87810 0.97081 0.93860 0.96689 0.96113 0.88289 0.92311 0.79881 0.90914 0.89243 0.89585 0.81091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 8.70 37.16 0.32 -1.07 16 2 C -0.03 -0.32 2.29 -92.93 -0.21 -0.53 16 3 H 0.09 0.77 6.15 -51.92 -0.32 0.45 16 4 C 0.52 8.26 6.55 -10.99 -0.07 8.18 16 5 O -0.53 -10.81 15.80 5.55 0.09 -10.72 16 6 N -0.61 -8.87 2.61 -173.41 -0.45 -9.32 16 7 C 0.11 1.14 6.15 -3.71 -0.02 1.12 16 8 C -0.13 -1.52 5.92 -26.55 -0.16 -1.68 16 9 C -0.10 -1.35 4.52 -27.03 -0.12 -1.48 16 10 C -0.08 -1.49 0.54 -154.32 -0.08 -1.57 16 11 C -0.13 -2.58 5.99 -24.88 -0.15 -2.73 16 12 C 0.15 3.88 5.58 -2.43 -0.01 3.87 16 13 N -0.60 -16.36 3.40 -170.23 -0.58 -16.94 16 14 C -0.22 -6.41 10.28 -15.06 -0.15 -6.56 16 15 H 0.07 2.13 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 17 N -0.92 -28.10 10.09 55.49 0.56 -27.54 16 18 Si 0.91 23.38 29.55 -169.99 -5.02 18.36 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C 0.16 3.52 5.42 -3.32 -0.02 3.51 16 23 C 0.13 2.24 4.86 -4.27 -0.02 2.22 16 24 C -0.23 -2.80 4.69 -105.05 -0.49 -3.29 16 25 C 0.07 1.10 11.43 -17.36 -0.20 0.90 16 26 N -0.29 -4.50 12.57 30.63 0.39 -4.12 16 27 N -0.38 -4.33 4.01 -68.16 -0.27 -4.61 16 28 C 0.10 0.71 11.47 59.85 0.69 1.40 16 29 C 0.06 0.59 11.18 -17.22 -0.19 0.40 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.65 5.31 -51.93 -0.28 0.38 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.94 7.29 -51.93 -0.38 0.56 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 39 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 40 H 0.06 1.18 8.02 -51.93 -0.42 0.77 16 41 H 0.10 2.94 5.88 -51.93 -0.31 2.63 16 42 H 0.01 0.31 7.91 -51.93 -0.41 -0.10 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.02 0.35 7.61 -51.93 -0.40 -0.05 16 45 H 0.02 0.51 7.54 -51.93 -0.39 0.12 16 46 H 0.10 2.12 6.55 -51.93 -0.34 1.78 16 47 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 48 H 0.18 2.88 8.06 -52.49 -0.42 2.46 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 51 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 52 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 401.98 15.07 6.06 6.06 Total: -1.00 -37.06 401.98 -8.90 -45.96 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.66 Total: 0.61 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -1.00 Total: 2.25 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -0.36 Total: -62.51 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.06 -8.90 -45.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054248615.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.340 kcal (2) G-P(sol) polarization free energy of solvation -37.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds