Wall clock time and date at job start Wed Apr 1 2020 04:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.46929 * 2 1 4 4 C 1.50699 * 109.47731 * 240.00448 * 2 1 3 5 5 O 1.21288 * 119.99212 * 325.33265 * 4 2 1 6 6 N 1.34774 * 120.00547 * 145.61084 * 4 2 1 7 7 C 1.46933 * 120.70040 * 5.14009 * 6 4 2 8 8 C 1.53182 * 108.93214 * 125.84361 * 7 6 4 9 9 C 1.53177 * 109.27354 * 55.21497 * 8 7 6 10 10 C 1.52238 * 109.64666 * 299.82644 * 9 8 7 11 11 C 1.54478 * 110.28978 * 182.00153 * 10 9 8 12 12 C 1.55029 * 101.53132 * 153.34429 * 11 10 9 13 13 N 1.47489 * 104.90516 * 323.65758 * 12 11 10 14 14 C 1.36932 * 125.66184 * 204.02642 * 13 12 11 15 15 H 1.08000 * 119.99995 * 179.97438 * 14 13 12 16 16 C 1.38809 * 120.00401 * 359.97438 * 14 13 12 17 17 N 1.31628 * 119.99838 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00431 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47380 * 59.99494 * 18 16 14 20 20 H 1.48504 * 109.47427 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47032 * 299.99420 * 18 16 14 22 22 C 1.47186 * 108.67425 * 24.01067 * 13 12 11 23 23 C 1.47074 * 120.70347 * 184.86042 * 6 4 2 24 24 C 1.50694 * 109.47130 * 119.99691 * 2 1 3 25 25 C 1.39880 * 126.03759 * 59.69763 * 24 2 1 26 26 N 1.30835 * 108.19801 * 179.81751 * 25 24 2 27 27 N 1.40078 * 108.21024 * 0.43746 * 26 25 24 28 28 C 1.46503 * 126.03968 * 179.73769 * 27 26 25 29 29 C 1.34952 * 107.92619 * 359.71895 * 27 26 25 30 30 H 1.08991 * 109.47381 * 304.99130 * 1 2 3 31 31 H 1.09004 * 109.46719 * 64.99280 * 1 2 3 32 32 H 1.09007 * 109.46793 * 184.98599 * 1 2 3 33 33 H 1.08997 * 109.56250 * 245.67827 * 7 6 4 34 34 H 1.09002 * 109.56328 * 5.90131 * 7 6 4 35 35 H 1.08996 * 109.51103 * 175.15566 * 8 7 6 36 36 H 1.08999 * 109.50323 * 295.23581 * 8 7 6 37 37 H 1.08996 * 109.43730 * 59.88057 * 9 8 7 38 38 H 1.08999 * 109.43777 * 179.77681 * 9 8 7 39 39 H 1.08997 * 111.01787 * 271.40814 * 11 10 9 40 40 H 1.08999 * 111.01457 * 35.28339 * 11 10 9 41 41 H 1.08992 * 110.35633 * 204.79887 * 12 11 10 42 42 H 1.09004 * 110.44197 * 82.56012 * 12 11 10 43 43 H 0.96994 * 120.00119 * 180.02562 * 17 16 14 44 44 H 1.08994 * 109.90924 * 239.09967 * 22 13 12 45 45 H 1.08998 * 109.90693 * 117.83218 * 22 13 12 46 46 H 1.09000 * 109.57892 * 352.26224 * 23 6 4 47 47 H 1.09002 * 109.57440 * 112.65177 * 23 6 4 48 48 H 1.07994 * 125.89392 * 359.97438 * 25 24 2 49 49 H 1.08995 * 109.47245 * 269.97754 * 28 27 26 50 50 H 1.09010 * 109.46780 * 29.98105 * 28 27 26 51 51 H 1.09000 * 109.47322 * 149.97125 * 28 27 26 52 52 H 1.07993 * 126.12653 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0325 -0.7103 -1.2305 5 8 1.4201 -1.6575 -1.6763 6 7 3.1652 -0.2965 -1.8322 7 6 3.9822 0.7716 -1.2400 8 6 5.4201 0.2677 -1.0819 9 6 5.9360 -0.2225 -2.4383 10 6 5.0560 -1.3588 -2.9404 11 6 5.5928 -1.8984 -4.2846 12 6 5.0776 -3.3603 -4.2597 13 7 5.1787 -3.7742 -2.8477 14 6 5.2864 -5.0636 -2.3995 15 1 5.3554 -5.2631 -1.3403 16 6 5.3070 -6.1143 -3.3064 17 7 5.2224 -5.8712 -4.5972 18 14 5.4548 -7.8731 -2.6950 19 1 4.3058 -8.1871 -1.8081 20 1 5.4534 -8.8019 -3.8538 21 1 6.7222 -8.0288 -1.9369 22 6 5.1448 -2.5711 -2.0004 23 6 3.6129 -0.9086 -3.0923 24 6 2.0323 -0.7103 1.2304 25 6 1.7685 -2.0391 1.5789 26 7 2.3776 -2.2939 2.7085 27 7 3.0408 -1.1308 3.1203 28 6 3.8405 -0.9801 4.3385 29 6 2.8134 -0.1738 2.1964 30 1 -0.3634 0.5893 0.8418 31 1 -0.3633 0.4345 -0.9314 32 1 -0.3633 -1.0239 0.0893 33 1 3.9710 1.6443 -1.8929 34 1 3.5789 1.0409 -0.2638 35 1 6.0530 1.0796 -0.7238 36 1 5.4413 -0.5534 -0.3654 37 1 5.9114 0.5990 -3.1542 38 1 6.9607 -0.5781 -2.3297 39 1 5.1679 -1.3485 -5.1243 40 1 6.6821 -1.8683 -4.3109 41 1 5.7049 -3.9941 -4.8864 42 1 4.0411 -3.4045 -4.5945 43 1 5.2364 -6.6054 -5.2309 44 1 6.0547 -2.5120 -1.4033 45 1 4.2715 -2.6005 -1.3489 46 1 2.9855 -1.7695 -3.3233 47 1 3.5444 -0.1776 -3.8980 48 1 1.1682 -2.7351 1.0120 49 1 3.2000 -0.6459 5.1546 50 1 4.2904 -1.9383 4.5986 51 1 4.6263 -0.2441 4.1685 52 1 3.1881 0.8387 2.2230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054248615.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:30 Heat of formation + Delta-G solvation = 49.060692 kcal Electronic energy + Delta-G solvation = -32803.864857 eV Core-core repulsion = 28804.864171 eV Total energy + Delta-G solvation = -3999.000687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.37826 -41.45209 -39.73945 -37.26901 -35.46359 -34.72036 -33.49600 -33.17043 -31.84442 -30.37366 -29.99930 -27.67808 -27.37173 -26.90053 -25.51016 -24.45747 -23.15898 -22.15809 -21.96238 -21.66995 -20.02392 -19.17713 -18.93073 -18.24808 -17.61564 -17.04101 -16.75339 -16.40536 -16.27298 -15.84658 -15.73051 -15.32494 -15.00577 -14.94391 -14.82881 -14.25688 -14.16711 -14.05620 -13.88487 -13.73576 -13.63407 -13.47714 -13.37062 -13.29552 -12.97805 -12.92241 -12.78627 -12.59813 -12.50400 -12.34614 -12.11660 -12.01569 -11.90859 -11.78571 -11.55573 -11.44381 -11.28556 -11.01556 -10.79360 -10.65080 -10.37844 -9.50095 -9.31455 -8.91881 -7.82228 -5.26037 0.93847 1.36354 1.41431 1.47587 1.54070 1.71567 1.91383 2.17785 2.43885 3.25358 3.56768 3.63764 3.67648 3.72969 3.90103 3.95814 3.97826 4.16212 4.19504 4.21521 4.26381 4.32552 4.34855 4.45544 4.48065 4.58825 4.66368 4.69242 4.72557 4.78221 4.82887 4.83445 4.85406 4.88532 4.96793 4.99030 5.03303 5.11279 5.12246 5.17532 5.24932 5.35924 5.37857 5.50221 5.53240 5.57096 5.61487 5.65741 5.80598 6.18493 6.27284 6.58570 6.69743 7.07060 7.34288 7.74889 8.39130 9.19112 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009725 B = 0.004120 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.574820 B = 6794.208236 C = 7946.305717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.013 4.013 3 H 0.140 0.860 4 C 0.510 3.490 5 O -0.594 6.594 6 N -0.606 5.606 7 C 0.102 3.898 8 C -0.130 4.130 9 C -0.096 4.096 10 C -0.070 4.070 11 C -0.118 4.118 12 C 0.156 3.844 13 N -0.625 5.625 14 C -0.243 4.243 15 H 0.064 0.936 16 C -0.063 4.063 17 N -0.945 5.945 18 Si 0.977 3.023 19 H -0.287 1.287 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.162 3.838 23 C 0.136 3.864 24 C -0.245 4.245 25 C 0.042 3.958 26 N -0.342 5.342 27 N -0.376 5.376 28 C 0.092 3.908 29 C 0.087 3.913 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.037 0.963 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.071 0.929 42 H -0.026 1.026 43 H 0.248 0.752 44 H 0.014 0.986 45 H -0.011 1.011 46 H 0.039 0.961 47 H 0.091 0.909 48 H 0.152 0.848 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.124 0.876 52 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 26.500 14.083 30.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.035 4.035 3 H 0.158 0.842 4 C 0.300 3.700 5 O -0.474 6.474 6 N -0.338 5.338 7 C -0.019 4.019 8 C -0.167 4.167 9 C -0.134 4.134 10 C -0.072 4.072 11 C -0.157 4.157 12 C 0.031 3.969 13 N -0.351 5.351 14 C -0.372 4.372 15 H 0.082 0.918 16 C -0.256 4.256 17 N -0.595 5.595 18 Si 0.804 3.196 19 H -0.214 1.214 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.037 3.963 23 C 0.012 3.988 24 C -0.257 4.257 25 C -0.143 4.143 26 N -0.164 5.164 27 N -0.157 5.157 28 C -0.047 4.047 29 C -0.061 4.061 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.056 0.944 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.089 0.911 42 H -0.008 1.008 43 H 0.058 0.942 44 H 0.032 0.968 45 H 0.007 0.993 46 H 0.058 0.942 47 H 0.109 0.891 48 H 0.169 0.831 49 H 0.111 0.889 50 H 0.096 0.904 51 H 0.143 0.857 52 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.750 24.932 14.847 29.028 hybrid contribution -0.519 -1.912 -0.689 2.097 sum -1.269 23.021 14.159 27.056 Atomic orbital electron populations 1.21621 0.92215 1.01844 1.02778 1.19575 0.97366 0.99914 0.86685 0.84209 1.21471 0.80197 0.83227 0.85130 1.90705 1.59446 1.30078 1.67203 1.48265 1.23417 1.38231 1.23904 1.22151 0.90053 0.89004 1.00669 1.21937 0.96690 1.01599 0.96524 1.21396 0.97570 0.96372 0.98044 1.21210 0.95683 0.94815 0.95445 1.22850 1.00578 0.95707 0.96585 1.21721 0.95915 0.93272 0.85980 1.44858 1.85796 1.01342 1.03064 1.19284 1.42600 0.83376 0.91945 0.91774 1.25581 1.02517 1.01791 0.95664 1.70051 1.58172 1.30429 1.00837 0.85187 0.78070 0.79415 0.76885 1.21418 1.20928 1.19787 1.21211 0.95405 0.86782 0.92885 1.21147 0.93591 0.97522 0.86506 1.19661 1.10724 0.94622 1.00680 1.23672 0.99178 0.97438 0.93996 1.77345 1.14807 1.08134 1.16158 1.48840 1.39353 1.07377 1.20143 1.22246 0.95116 1.04874 0.82511 1.22989 0.97408 0.97057 0.88614 0.89196 0.92190 0.94637 0.87995 0.87159 0.86688 0.94369 0.88594 0.92106 0.89231 0.90899 0.91077 1.00841 0.94214 0.96844 0.99266 0.94226 0.89079 0.83099 0.88896 0.90426 0.85743 0.75217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 8.70 71.98 0.63 -2.05 16 2 C -0.01 -0.28 2.29 -12.29 -0.03 -0.31 16 3 H 0.14 1.53 6.15 -2.38 -0.01 1.52 16 4 C 0.51 16.36 6.55 87.66 0.57 16.93 16 5 O -0.59 -26.69 15.80 -3.05 -0.05 -26.73 16 6 N -0.61 -16.70 2.61 -820.94 -2.14 -18.84 16 7 C 0.10 1.53 6.15 86.36 0.53 2.06 16 8 C -0.13 -2.25 5.92 30.71 0.18 -2.07 16 9 C -0.10 -2.20 4.52 30.40 0.14 -2.07 16 10 C -0.07 -2.42 0.54 -52.06 -0.03 -2.45 16 11 C -0.12 -4.51 5.99 31.79 0.19 -4.31 16 12 C 0.16 8.40 5.58 86.88 0.48 8.88 16 13 N -0.62 -36.18 3.40 -692.49 -2.36 -38.54 16 14 C -0.24 -15.36 10.28 84.03 0.86 -14.49 16 15 H 0.06 4.02 7.83 -2.91 -0.02 4.00 16 16 C -0.06 -3.91 5.49 84.86 0.47 -3.44 16 17 N -0.95 -60.53 10.09 21.65 0.22 -60.31 16 18 Si 0.98 50.02 29.55 68.60 2.03 52.05 16 19 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 20 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 21 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 22 C 0.16 7.64 5.42 86.47 0.47 8.11 16 23 C 0.14 4.60 4.86 85.92 0.42 5.01 16 24 C -0.24 -5.77 4.69 -20.14 -0.09 -5.86 16 25 C 0.04 1.39 11.43 85.24 0.97 2.36 16 26 N -0.34 -10.97 12.57 -57.02 -0.72 -11.68 16 27 N -0.38 -7.82 4.01 -369.55 -1.48 -9.30 16 28 C 0.09 0.98 11.47 127.77 1.47 2.44 16 29 C 0.09 1.38 11.18 83.54 0.93 2.31 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.03 0.97 7.75 -2.38 -0.02 0.95 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.99 5.31 -2.39 -0.01 0.98 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.04 0.92 7.29 -2.39 -0.02 0.90 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 39 H 0.09 2.86 7.97 -2.39 -0.02 2.84 16 40 H 0.07 2.64 8.02 -2.39 -0.02 2.62 16 41 H 0.07 4.28 5.88 -2.39 -0.01 4.27 16 42 H -0.03 -1.58 7.91 -2.39 -0.02 -1.59 16 43 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.01 0.64 7.61 -2.39 -0.02 0.62 16 45 H -0.01 -0.56 7.54 -2.39 -0.02 -0.58 16 46 H 0.04 1.82 6.55 -2.39 -0.02 1.81 16 47 H 0.09 2.49 8.10 -2.39 -0.02 2.47 16 48 H 0.15 5.66 8.06 -2.91 -0.02 5.64 16 49 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 51 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 52 H 0.23 0.76 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -95.53 401.98 4.57 -90.96 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.90 Total: 11.33 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 8.16 Total: 11.06 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -6.48 Total: -138.67 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.03 Total: 52.05 kcal Total: -95.53 4.57 -90.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054248615.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.025 kcal (2) G-P(sol) polarization free energy of solvation -95.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds