Wall clock time and date at job start Wed Apr 1 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 O 1.21285 * 119.99764 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00090 * 180.02562 * 5 4 2 8 8 C 1.47147 * 121.21912 * 359.71530 * 7 5 4 9 9 C 1.53293 * 107.74318 * 122.71070 * 8 7 5 10 10 C 1.53093 * 110.50813 * 57.54426 * 9 8 7 11 11 H 1.09007 * 113.06210 * 70.89748 * 10 9 8 12 12 C 1.56026 * 106.39104 * 195.32303 * 10 9 8 13 13 C 1.54503 * 102.61082 * 78.36849 * 12 10 9 14 14 N 1.46649 * 107.02665 * 22.27005 * 13 12 10 15 15 C 1.36934 * 125.63938 * 182.09398 * 14 13 12 16 16 H 1.07997 * 120.00191 * 180.56001 * 15 14 13 17 17 C 1.38808 * 120.00241 * 0.56186 * 15 14 13 18 18 N 1.31625 * 119.99978 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00460 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46824 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47229 * 119.99923 * 19 17 15 22 22 H 1.48501 * 109.47267 * 239.99823 * 19 17 15 23 23 C 1.46467 * 108.30148 * 2.57259 * 14 13 12 24 24 H 1.08998 * 108.42620 * 88.74277 * 23 14 13 25 25 C 1.46762 * 121.21475 * 179.97438 * 7 5 4 26 26 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 27 27 C 1.39865 * 126.03793 * 59.68913 * 26 2 1 28 28 N 1.30847 * 108.19857 * 179.82380 * 27 26 2 29 29 N 1.40082 * 108.20457 * 0.43225 * 28 27 26 30 30 C 1.46501 * 126.03586 * 179.69732 * 29 28 27 31 31 C 1.34945 * 107.92572 * 359.72742 * 29 28 27 32 32 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 33 33 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 34 34 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 35 35 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 36 36 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 37 37 H 1.08998 * 109.76148 * 242.36017 * 8 7 5 38 38 H 1.09000 * 109.75909 * 3.11878 * 8 7 5 39 39 H 1.09001 * 109.38534 * 297.23075 * 9 8 7 40 40 H 1.09000 * 109.17412 * 177.73265 * 9 8 7 41 41 H 1.08995 * 110.78934 * 196.65106 * 12 10 9 42 42 H 1.08999 * 110.78363 * 319.90174 * 12 10 9 43 43 H 1.09004 * 109.90348 * 142.23527 * 13 12 10 44 44 H 1.08995 * 109.90495 * 263.29908 * 13 12 10 45 45 H 0.96998 * 120.00216 * 179.97438 * 18 17 15 46 46 H 1.08997 * 109.23024 * 352.83075 * 25 7 5 47 47 H 1.09001 * 109.22270 * 112.23712 * 25 7 5 48 48 H 1.07999 * 125.90322 * 359.97438 * 27 26 2 49 49 H 1.08998 * 109.47538 * 270.03134 * 30 29 28 50 50 H 1.08997 * 109.46942 * 30.03391 * 30 29 28 51 51 H 1.08996 * 109.46980 * 150.02858 * 30 29 28 52 52 H 1.08001 * 126.12612 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9845 -0.3920 -3.7001 8 6 2.7534 -1.6353 -3.8684 9 6 1.9353 -2.5729 -4.7637 10 6 1.6336 -1.9037 -6.1071 11 1 2.5137 -1.8065 -6.7429 12 6 0.4962 -2.7409 -6.7704 13 6 -0.7633 -2.2526 -6.0205 14 7 -0.4493 -0.9303 -5.4695 15 6 -1.2860 -0.1679 -4.6990 16 1 -0.9633 0.8010 -4.3476 17 6 -2.5490 -0.6402 -4.3695 18 7 -2.9426 -1.8208 -4.7981 19 14 -3.6901 0.3996 -3.3178 20 1 -3.0151 1.6750 -2.9673 21 1 -4.9343 0.6892 -4.0750 22 1 -4.0279 -0.3391 -2.0747 23 6 0.9037 -0.5644 -5.8945 24 1 0.8367 -0.0524 -6.8544 25 6 1.6098 0.3442 -4.9132 26 6 2.0324 -0.7105 1.2305 27 6 1.7685 -2.0391 1.5789 28 7 2.3776 -2.2940 2.7086 29 7 3.0410 -1.1309 3.1202 30 6 3.8400 -0.9800 4.3388 31 6 2.8135 -0.1739 2.1964 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 3.1263 -0.7996 -1.2055 36 1 1.6054 -1.7198 -1.2952 37 1 3.7115 -1.4152 -4.3391 38 1 2.9178 -2.1012 -2.8968 39 1 0.9973 -2.8204 -4.2668 40 1 2.5024 -3.4875 -4.9370 41 1 0.4229 -2.5188 -7.8350 42 1 0.6566 -3.8070 -6.6096 43 1 -1.6043 -2.1877 -6.7108 44 1 -1.0018 -2.9401 -5.2090 45 1 -3.8250 -2.1511 -4.5676 46 1 0.9464 1.1661 -4.6438 47 1 2.5084 0.7468 -5.3807 48 1 1.1680 -2.7352 1.0121 49 1 3.1989 -0.6461 5.1547 50 1 4.2901 -1.9379 4.5991 51 1 4.6255 -0.2436 4.1693 52 1 3.1883 0.8386 2.2229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084996294.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:43 Heat of formation + Delta-G solvation = 72.581356 kcal Electronic energy + Delta-G solvation = -32402.854297 eV Core-core repulsion = 28404.873543 eV Total energy + Delta-G solvation = -3997.980754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.29361 -39.90962 -38.19179 -35.25900 -34.78219 -32.83334 -32.72830 -31.13987 -29.88244 -29.23346 -28.32031 -27.25592 -26.55769 -24.55807 -23.77929 -22.51152 -22.34100 -21.13611 -20.02009 -19.87686 -19.05743 -18.07876 -17.02605 -16.48308 -16.32732 -15.57354 -15.44683 -14.92556 -14.78180 -14.45357 -14.31174 -14.07587 -13.87744 -13.64125 -13.31268 -13.06403 -12.96270 -12.87308 -12.61517 -12.50980 -12.41838 -12.11231 -11.86984 -11.56744 -11.37183 -11.20934 -11.18810 -10.87089 -10.84209 -10.80552 -10.67924 -10.60137 -10.28883 -10.01739 -9.79458 -9.73883 -9.58595 -9.47242 -9.45025 -9.03969 -8.46537 -8.36883 -7.98796 -6.70595 -5.58037 -2.90107 1.82282 2.43619 2.78669 3.25646 3.50564 3.57729 3.60086 3.63672 4.36768 4.63558 4.74650 4.87592 4.89913 5.02144 5.10792 5.12691 5.16865 5.26710 5.34301 5.39935 5.52704 5.57454 5.60564 5.69379 5.73302 5.75729 5.80780 5.85238 5.89643 6.00758 6.04370 6.12005 6.19030 6.20450 6.33201 6.35710 6.41647 6.50265 6.55621 6.59310 6.63722 6.68193 6.81171 6.91637 6.94492 7.02336 7.19621 7.64617 7.68795 7.72233 7.98103 8.04493 8.37522 8.84173 9.36842 9.97012 10.60464 11.53711 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.003662 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.340101 B = 7644.092723 C = 8905.527781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.007 3.993 3 H 0.079 0.921 4 C -0.127 4.127 5 C 0.522 3.478 6 O -0.535 6.535 7 N -0.596 5.596 8 C 0.111 3.889 9 C -0.121 4.121 10 C -0.101 4.101 11 H 0.073 0.927 12 C -0.145 4.145 13 C 0.180 3.820 14 N -0.588 5.588 15 C -0.210 4.210 16 H 0.082 0.918 17 C -0.008 4.008 18 N -0.926 5.926 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.292 1.292 23 C 0.154 3.846 24 H 0.025 0.975 25 C 0.115 3.885 26 C -0.219 4.219 27 C 0.057 3.943 28 N -0.302 5.302 29 N -0.383 5.383 30 C 0.104 3.896 31 C 0.051 3.949 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.248 0.752 46 H 0.094 0.906 47 H 0.051 0.949 48 H 0.182 0.818 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.085 0.915 52 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.212 -0.445 9.707 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 H 0.097 0.903 4 C -0.167 4.167 5 C 0.310 3.690 6 O -0.412 6.412 7 N -0.329 5.329 8 C -0.012 4.012 9 C -0.160 4.160 10 C -0.121 4.121 11 H 0.092 0.908 12 C -0.183 4.183 13 C 0.055 3.945 14 N -0.313 5.313 15 C -0.338 4.338 16 H 0.100 0.900 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.222 1.222 22 H -0.219 1.219 23 C 0.045 3.955 24 H 0.042 0.958 25 C -0.008 4.008 26 C -0.231 4.231 27 C -0.129 4.129 28 N -0.123 5.123 29 N -0.166 5.166 30 C -0.037 4.037 31 C -0.095 4.095 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.113 0.887 47 H 0.069 0.931 48 H 0.199 0.801 49 H 0.090 0.910 50 H 0.105 0.895 51 H 0.103 0.897 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 16.980 -0.749 10.925 20.205 hybrid contribution -0.865 0.869 -0.117 1.232 sum 16.114 0.120 10.809 19.404 Atomic orbital electron populations 1.21937 0.93726 1.01905 1.02995 1.19132 0.96307 0.97776 0.88065 0.90300 1.21697 1.01795 1.00537 0.92708 1.20372 0.78870 0.85635 0.84080 1.90641 1.39332 1.25216 1.85980 1.47815 1.54735 1.24527 1.05837 1.21723 0.93958 0.85340 1.00204 1.21895 1.01139 0.96929 0.95992 1.22365 0.97023 0.96941 0.95801 0.90844 1.23185 0.97659 0.98422 0.99072 1.21067 0.91242 0.86700 0.95473 1.44112 1.09988 1.17798 1.59384 1.19103 0.93706 0.98643 1.22355 0.89988 1.24676 0.97625 0.97029 1.00977 1.69980 1.19361 1.18194 1.49957 0.86169 0.80806 0.79909 0.79927 1.20132 1.22191 1.21931 1.20702 0.87065 0.92876 0.94812 0.95791 1.21315 0.98328 0.96145 0.85050 1.20185 1.07069 0.95307 1.00514 1.23804 0.98841 0.96368 0.93860 1.77342 1.13624 1.05964 1.15355 1.48412 1.40670 1.08445 1.19048 1.21787 0.94325 1.03842 0.83774 1.22319 1.00783 0.95556 0.90809 0.89734 0.93551 0.93216 0.89837 0.89107 0.92071 0.90441 0.89997 0.92283 0.92923 0.92406 0.94439 0.93562 0.94195 0.88743 0.93101 0.80113 0.91025 0.89506 0.89687 0.81143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.82 37.16 0.33 -2.12 16 2 C 0.01 0.10 2.40 -91.77 -0.22 -0.12 16 3 H 0.08 1.11 7.92 -51.93 -0.41 0.70 16 4 C -0.13 -1.77 3.40 -27.88 -0.09 -1.86 16 5 C 0.52 9.30 7.43 -10.98 -0.08 9.22 16 6 O -0.53 -11.44 13.42 5.55 0.07 -11.36 16 7 N -0.60 -10.07 2.96 -173.83 -0.51 -10.58 16 8 C 0.11 1.49 6.39 -3.54 -0.02 1.46 16 9 C -0.12 -1.83 5.05 -26.53 -0.13 -1.96 16 10 C -0.10 -1.65 3.68 -88.43 -0.33 -1.98 16 11 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 12 C -0.15 -2.61 6.32 -24.32 -0.15 -2.77 16 13 C 0.18 4.27 4.59 -3.17 -0.01 4.25 16 14 N -0.59 -14.35 3.13 -165.07 -0.52 -14.86 16 15 C -0.21 -5.79 9.69 -15.06 -0.15 -5.94 16 16 H 0.08 2.33 6.52 -52.49 -0.34 1.99 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 18 N -0.93 -27.36 10.32 55.49 0.57 -26.79 16 19 Si 0.90 23.29 29.55 -169.99 -5.02 18.27 16 20 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 23 C 0.15 3.03 3.00 -68.32 -0.21 2.82 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 25 C 0.12 2.11 5.66 -4.79 -0.03 2.08 16 26 C -0.22 -2.75 4.80 -105.05 -0.50 -3.25 16 27 C 0.06 0.75 11.54 -17.36 -0.20 0.55 16 28 N -0.30 -4.08 12.58 30.62 0.39 -3.69 16 29 N -0.38 -4.18 4.01 -68.17 -0.27 -4.46 16 30 C 0.10 0.65 11.47 59.85 0.69 1.34 16 31 C 0.05 0.54 11.38 -17.22 -0.20 0.35 16 32 H 0.08 1.71 5.95 -51.93 -0.31 1.40 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.81 8.02 -51.93 -0.42 0.39 16 35 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 36 H 0.09 1.25 7.80 -51.93 -0.40 0.85 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.89 6.02 -51.93 -0.31 0.58 16 39 H 0.08 1.55 6.84 -51.93 -0.36 1.20 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.95 7.98 -51.93 -0.41 0.53 16 43 H 0.04 1.00 7.59 -51.93 -0.39 0.61 16 44 H 0.05 1.22 6.96 -51.93 -0.36 0.86 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.09 2.04 5.56 -51.93 -0.29 1.75 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.18 2.12 8.06 -52.49 -0.42 1.70 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -34.36 399.31 -9.32 -43.67 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.63 Total: 2.04 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.41 Total: 1.75 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.35 Total: -60.38 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.27 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.36 -9.32 -43.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084996294.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.254 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds