Wall clock time and date at job start Wed Apr 1 2020 05:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 O 1.21285 * 119.99764 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00090 * 180.02562 * 5 4 2 8 8 C 1.47147 * 121.21912 * 359.71530 * 7 5 4 9 9 C 1.53293 * 107.74318 * 122.71070 * 8 7 5 10 10 C 1.53093 * 110.50813 * 57.54426 * 9 8 7 11 11 H 1.09007 * 113.06210 * 70.89748 * 10 9 8 12 12 C 1.56026 * 106.39104 * 195.32303 * 10 9 8 13 13 C 1.54503 * 102.61082 * 78.36849 * 12 10 9 14 14 N 1.46649 * 107.02665 * 22.27005 * 13 12 10 15 15 C 1.36934 * 125.63938 * 182.09398 * 14 13 12 16 16 H 1.07997 * 120.00191 * 180.56001 * 15 14 13 17 17 C 1.38808 * 120.00241 * 0.56186 * 15 14 13 18 18 N 1.31625 * 119.99978 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00460 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46824 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47229 * 119.99923 * 19 17 15 22 22 H 1.48501 * 109.47267 * 239.99823 * 19 17 15 23 23 C 1.46467 * 108.30148 * 2.57259 * 14 13 12 24 24 H 1.08998 * 108.42620 * 88.74277 * 23 14 13 25 25 C 1.46762 * 121.21475 * 179.97438 * 7 5 4 26 26 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 27 27 C 1.39865 * 126.03793 * 59.68913 * 26 2 1 28 28 N 1.30847 * 108.19857 * 179.82380 * 27 26 2 29 29 N 1.40082 * 108.20457 * 0.43225 * 28 27 26 30 30 C 1.46501 * 126.03586 * 179.69732 * 29 28 27 31 31 C 1.34945 * 107.92572 * 359.72742 * 29 28 27 32 32 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 33 33 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 34 34 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 35 35 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 36 36 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 37 37 H 1.08998 * 109.76148 * 242.36017 * 8 7 5 38 38 H 1.09000 * 109.75909 * 3.11878 * 8 7 5 39 39 H 1.09001 * 109.38534 * 297.23075 * 9 8 7 40 40 H 1.09000 * 109.17412 * 177.73265 * 9 8 7 41 41 H 1.08995 * 110.78934 * 196.65106 * 12 10 9 42 42 H 1.08999 * 110.78363 * 319.90174 * 12 10 9 43 43 H 1.09004 * 109.90348 * 142.23527 * 13 12 10 44 44 H 1.08995 * 109.90495 * 263.29908 * 13 12 10 45 45 H 0.96998 * 120.00216 * 179.97438 * 18 17 15 46 46 H 1.08997 * 109.23024 * 352.83075 * 25 7 5 47 47 H 1.09001 * 109.22270 * 112.23712 * 25 7 5 48 48 H 1.07999 * 125.90322 * 359.97438 * 27 26 2 49 49 H 1.08998 * 109.47538 * 270.03134 * 30 29 28 50 50 H 1.08997 * 109.46942 * 30.03391 * 30 29 28 51 51 H 1.08996 * 109.46980 * 150.02858 * 30 29 28 52 52 H 1.08001 * 126.12612 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9845 -0.3920 -3.7001 8 6 2.7534 -1.6353 -3.8684 9 6 1.9353 -2.5729 -4.7637 10 6 1.6336 -1.9037 -6.1071 11 1 2.5137 -1.8065 -6.7429 12 6 0.4962 -2.7409 -6.7704 13 6 -0.7633 -2.2526 -6.0205 14 7 -0.4493 -0.9303 -5.4695 15 6 -1.2860 -0.1679 -4.6990 16 1 -0.9633 0.8010 -4.3476 17 6 -2.5490 -0.6402 -4.3695 18 7 -2.9426 -1.8208 -4.7981 19 14 -3.6901 0.3996 -3.3178 20 1 -3.0151 1.6750 -2.9673 21 1 -4.9343 0.6892 -4.0750 22 1 -4.0279 -0.3391 -2.0747 23 6 0.9037 -0.5644 -5.8945 24 1 0.8367 -0.0524 -6.8544 25 6 1.6098 0.3442 -4.9132 26 6 2.0324 -0.7105 1.2305 27 6 1.7685 -2.0391 1.5789 28 7 2.3776 -2.2940 2.7086 29 7 3.0410 -1.1309 3.1202 30 6 3.8400 -0.9800 4.3388 31 6 2.8135 -0.1739 2.1964 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 3.1263 -0.7996 -1.2055 36 1 1.6054 -1.7198 -1.2952 37 1 3.7115 -1.4152 -4.3391 38 1 2.9178 -2.1012 -2.8968 39 1 0.9973 -2.8204 -4.2668 40 1 2.5024 -3.4875 -4.9370 41 1 0.4229 -2.5188 -7.8350 42 1 0.6566 -3.8070 -6.6096 43 1 -1.6043 -2.1877 -6.7108 44 1 -1.0018 -2.9401 -5.2090 45 1 -3.8250 -2.1511 -4.5676 46 1 0.9464 1.1661 -4.6438 47 1 2.5084 0.7468 -5.3807 48 1 1.1680 -2.7352 1.0121 49 1 3.1989 -0.6461 5.1547 50 1 4.2901 -1.9379 4.5991 51 1 4.6255 -0.2436 4.1693 52 1 3.1883 0.8386 2.2229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084996294.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:42 Heat of formation + Delta-G solvation = 51.029527 kcal Electronic energy + Delta-G solvation = -32403.788854 eV Core-core repulsion = 28404.873543 eV Total energy + Delta-G solvation = -3998.915312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.18434 -41.29623 -39.67911 -36.58837 -36.09729 -34.59200 -33.63282 -32.76511 -31.20362 -30.39606 -29.98147 -28.57182 -27.32750 -26.44518 -25.28223 -23.83268 -23.49454 -21.98286 -21.69588 -21.14910 -20.27908 -19.48483 -18.40590 -18.14013 -17.31534 -16.96072 -16.62660 -16.31801 -16.14225 -16.01834 -15.60086 -15.39630 -15.24403 -14.99124 -14.60715 -14.20264 -14.11284 -13.96113 -13.77038 -13.65199 -13.62824 -13.34405 -13.21408 -13.06509 -13.01795 -12.91848 -12.64220 -12.52618 -12.38119 -12.26075 -12.03783 -12.00123 -11.88107 -11.62564 -11.33957 -11.32159 -11.20229 -11.05473 -10.62980 -10.43304 -10.32267 -9.34502 -9.26580 -8.76065 -7.79710 -5.09486 0.98150 1.36348 1.39310 1.50255 1.73526 1.82980 1.91105 2.35086 2.50517 3.39121 3.54482 3.64027 3.84536 3.92968 3.98559 4.01542 4.12811 4.17486 4.24539 4.35282 4.38200 4.45186 4.47346 4.56457 4.59636 4.65652 4.67338 4.72469 4.74451 4.75543 4.78283 4.81584 4.87409 4.95020 4.95712 5.05251 5.08587 5.18632 5.20579 5.22297 5.37802 5.43515 5.51405 5.59471 5.71182 5.72747 5.76541 5.83990 5.87633 6.19033 6.28225 6.74232 6.76346 7.20600 7.50216 7.89155 8.50450 9.30463 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.003662 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.340101 B = 7644.092723 C = 8905.527781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.020 3.980 3 H 0.078 0.922 4 C -0.116 4.116 5 C 0.509 3.491 6 O -0.581 6.581 7 N -0.600 5.600 8 C 0.109 3.891 9 C -0.119 4.119 10 C -0.084 4.084 11 H 0.120 0.880 12 C -0.132 4.132 13 C 0.188 3.812 14 N -0.603 5.603 15 C -0.196 4.196 16 H 0.068 0.932 17 C -0.061 4.061 18 N -0.949 5.949 19 Si 0.948 3.052 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.295 1.295 23 C 0.141 3.859 24 H 0.023 0.977 25 C 0.120 3.880 26 C -0.238 4.238 27 C 0.046 3.954 28 N -0.333 5.333 29 N -0.381 5.381 30 C 0.094 3.906 31 C 0.065 3.935 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.042 0.958 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.079 0.921 43 H -0.007 1.007 44 H 0.009 0.991 45 H 0.240 0.760 46 H 0.051 0.949 47 H 0.089 0.911 48 H 0.182 0.818 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.116 0.884 52 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.648 -0.774 10.293 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.000 4.000 3 H 0.096 0.904 4 C -0.155 4.155 5 C 0.299 3.701 6 O -0.462 6.462 7 N -0.332 5.332 8 C -0.012 4.012 9 C -0.157 4.157 10 C -0.103 4.103 11 H 0.138 0.862 12 C -0.170 4.170 13 C 0.063 3.937 14 N -0.328 5.328 15 C -0.325 4.325 16 H 0.085 0.915 17 C -0.254 4.254 18 N -0.601 5.601 19 Si 0.779 3.221 20 H -0.205 1.205 21 H -0.220 1.220 22 H -0.222 1.222 23 C 0.035 3.965 24 H 0.040 0.960 25 C -0.004 4.004 26 C -0.249 4.249 27 C -0.139 4.139 28 N -0.155 5.155 29 N -0.163 5.163 30 C -0.046 4.046 31 C -0.082 4.082 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.135 0.865 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.053 0.947 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.012 0.988 44 H 0.027 0.973 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.107 0.893 48 H 0.199 0.801 49 H 0.100 0.900 50 H 0.108 0.892 51 H 0.135 0.865 52 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 21.470 -1.101 11.507 24.384 hybrid contribution -2.200 1.037 -0.283 2.448 sum 19.270 -0.064 11.223 22.301 Atomic orbital electron populations 1.21851 0.96396 1.00784 1.01087 1.18912 0.93902 0.98064 0.89088 0.90351 1.21675 1.03719 0.99502 0.90635 1.21138 0.78140 0.85416 0.85411 1.90625 1.41328 1.27462 1.86744 1.48006 1.54611 1.25571 1.05040 1.22038 0.94428 0.83261 1.01519 1.21861 0.99817 0.98934 0.95075 1.22416 0.97339 0.93531 0.97049 0.86181 1.23047 0.95121 0.99892 0.98939 1.20800 0.93130 0.85979 0.93821 1.44296 1.11970 1.17800 1.58703 1.19118 0.93994 0.98184 1.21250 0.91459 1.25225 0.99114 0.98154 1.02879 1.70162 1.19146 1.19291 1.51470 0.85419 0.79437 0.78570 0.78653 1.20505 1.21970 1.22249 1.21026 0.85277 0.95491 0.94754 0.95953 1.21147 0.98905 0.94779 0.85614 1.19989 1.08900 0.95236 1.00788 1.23893 0.99068 0.96833 0.94069 1.77288 1.14760 1.07729 1.15743 1.48790 1.39984 1.07631 1.19886 1.22179 0.94860 1.05133 0.82423 1.22794 0.99174 0.96576 0.89608 0.93945 0.92968 0.93913 0.86466 0.89125 0.88136 0.88363 0.94745 0.88405 0.91693 0.90191 0.98842 0.97286 0.95015 0.93064 0.89281 0.80145 0.89961 0.89180 0.86536 0.77808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 8.82 71.98 0.63 -4.33 16 2 C 0.02 0.56 2.40 -11.54 -0.03 0.53 16 3 H 0.08 2.14 7.92 -2.39 -0.02 2.12 16 4 C -0.12 -3.06 3.40 29.85 0.10 -2.96 16 5 C 0.51 18.05 7.43 87.66 0.65 18.70 16 6 O -0.58 -25.86 13.42 -3.05 -0.04 -25.90 16 7 N -0.60 -19.30 2.96 -822.28 -2.44 -21.74 16 8 C 0.11 2.46 6.39 86.35 0.55 3.01 16 9 C -0.12 -3.17 5.05 30.72 0.16 -3.01 16 10 C -0.08 -2.43 3.68 -9.37 -0.03 -2.46 16 11 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 12 C -0.13 -4.49 6.32 32.15 0.20 -4.29 16 13 C 0.19 9.22 4.59 86.86 0.40 9.62 16 14 N -0.60 -30.37 3.13 -676.15 -2.12 -32.49 16 15 C -0.20 -11.35 9.69 84.03 0.81 -10.54 16 16 H 0.07 4.07 6.52 -2.91 -0.02 4.05 16 17 C -0.06 -3.70 5.49 84.86 0.47 -3.24 16 18 N -0.95 -59.30 10.32 21.65 0.22 -59.07 16 19 Si 0.95 50.55 29.55 68.60 2.03 52.58 16 20 H -0.28 -14.89 7.11 99.48 0.71 -14.18 16 21 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 22 H -0.30 -15.71 7.11 99.48 0.71 -15.01 16 23 C 0.14 5.42 3.00 44.76 0.13 5.55 16 24 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 25 C 0.12 4.26 5.66 85.75 0.49 4.74 16 26 C -0.24 -5.58 4.80 -20.14 -0.10 -5.68 16 27 C 0.05 1.18 11.54 85.23 0.98 2.16 16 28 N -0.33 -8.57 12.58 -57.02 -0.72 -9.28 16 29 N -0.38 -7.31 4.01 -369.57 -1.48 -8.79 16 30 C 0.09 0.87 11.47 127.77 1.47 2.34 16 31 C 0.07 1.21 11.38 83.54 0.95 2.16 16 32 H 0.04 1.82 5.95 -2.39 -0.01 1.81 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.04 1.47 8.02 -2.38 -0.02 1.45 16 35 H 0.12 2.32 7.90 -2.39 -0.02 2.30 16 36 H 0.09 2.43 7.80 -2.39 -0.02 2.41 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 1.84 6.02 -2.39 -0.01 1.83 16 39 H 0.03 1.26 6.84 -2.39 -0.02 1.25 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.08 2.40 7.98 -2.39 -0.02 2.38 16 43 H -0.01 -0.38 7.59 -2.39 -0.02 -0.40 16 44 H 0.01 0.50 6.96 -2.39 -0.02 0.48 16 45 H 0.24 14.79 8.31 -92.71 -0.77 14.02 16 46 H 0.05 2.28 5.56 -2.39 -0.01 2.27 16 47 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 48 H 0.18 4.29 8.06 -2.91 -0.02 4.27 16 49 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 51 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 52 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -83.17 399.31 4.20 -78.97 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.90 Total: 13.42 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 7.84 Total: 12.32 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -6.53 Total: -131.38 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.04 Total: -25.90 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.03 Total: 52.58 kcal Total: -83.17 4.20 -78.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084996294.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.001 kcal (2) G-P(sol) polarization free energy of solvation -83.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds