Wall clock time and date at job start Wed Apr 1 2020 05:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46779 * 2 1 4 4 C 1.53003 * 109.46838 * 240.00128 * 2 1 3 5 5 C 1.50698 * 109.46943 * 65.00204 * 4 2 1 6 6 O 1.21281 * 120.00553 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99911 * 179.97438 * 5 4 2 8 8 C 1.47760 * 125.82032 * 179.71499 * 7 5 4 9 9 C 1.56201 * 104.00530 * 154.06305 * 8 7 5 10 10 H 1.08999 * 113.91587 * 161.25689 * 9 8 7 11 11 C 1.52876 * 106.67460 * 286.46462 * 9 8 7 12 12 C 1.51602 * 111.55979 * 168.35362 * 11 9 8 13 13 N 1.44322 * 113.11345 * 320.91151 * 12 11 9 14 14 C 1.36931 * 116.35657 * 187.25908 * 13 12 11 15 15 H 1.08000 * 119.99947 * 152.49790 * 14 13 12 16 16 C 1.38813 * 119.99826 * 332.50043 * 14 13 12 17 17 N 1.31619 * 120.00008 * 335.32171 * 16 14 13 18 18 Si 1.86798 * 119.99924 * 155.32624 * 16 14 13 19 19 H 1.48507 * 109.47363 * 94.87098 * 18 16 14 20 20 H 1.48499 * 109.47009 * 214.86612 * 18 16 14 21 21 H 1.48499 * 109.47166 * 334.86867 * 18 16 14 22 22 C 1.43996 * 127.28777 * 7.27880 * 13 12 11 23 23 C 1.49950 * 116.09787 * 2.48468 * 22 13 12 24 24 H 1.09003 * 108.82617 * 141.04692 * 23 22 13 25 25 C 1.47620 * 125.81863 * 0.02562 * 7 5 4 26 26 C 1.50696 * 109.47051 * 119.99933 * 2 1 3 27 27 C 1.39871 * 126.03531 * 59.69313 * 26 2 1 28 28 N 1.30845 * 108.19805 * 180.26031 * 27 26 2 29 29 N 1.40084 * 108.20502 * 359.97438 * 28 27 26 30 30 C 1.46507 * 126.03291 * 180.02562 * 29 28 27 31 31 C 1.34948 * 107.92781 * 0.02562 * 29 28 27 32 32 H 1.09007 * 109.47290 * 300.00346 * 1 2 3 33 33 H 1.09007 * 109.47409 * 59.99674 * 1 2 3 34 34 H 1.08993 * 109.47251 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46771 * 184.99914 * 4 2 1 36 36 H 1.08995 * 109.47245 * 304.99950 * 4 2 1 37 37 H 1.08999 * 110.50115 * 272.79910 * 8 7 5 38 38 H 1.08996 * 110.49906 * 35.48519 * 8 7 5 39 39 H 1.08997 * 109.06979 * 47.80918 * 11 9 8 40 40 H 1.09010 * 109.05571 * 288.88538 * 11 9 8 41 41 H 1.09000 * 108.75533 * 199.97285 * 12 11 9 42 42 H 1.09004 * 108.66139 * 81.78185 * 12 11 9 43 43 H 0.97003 * 120.00129 * 179.97438 * 17 16 14 44 44 H 1.09001 * 108.15563 * 240.76263 * 22 13 12 45 45 H 1.09007 * 108.15598 * 124.20624 * 22 13 12 46 46 H 1.09004 * 110.07947 * 299.81968 * 25 7 5 47 47 H 1.09001 * 110.08290 * 61.37523 * 25 7 5 48 48 H 1.07992 * 125.90631 * 0.25840 * 27 26 2 49 49 H 1.09000 * 109.46857 * 269.97407 * 30 29 28 50 50 H 1.08994 * 109.47149 * 29.97777 * 30 29 28 51 51 H 1.08997 * 109.46984 * 149.98064 * 30 29 28 52 52 H 1.08000 * 126.12574 * 179.97438 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0109 1.0871 -2.3633 7 7 1.9852 -0.3913 -3.7001 8 6 1.6583 0.2627 -4.9842 9 6 2.7860 -0.2191 -5.9517 10 1 2.5411 -0.1046 -7.0076 11 6 4.0568 0.5309 -5.5520 12 6 5.2832 -0.0523 -6.2259 13 7 5.2557 -1.4932 -6.3034 14 6 6.3958 -2.0993 -6.7591 15 1 6.6343 -3.1054 -6.4469 16 6 7.2452 -1.4207 -7.6221 17 7 6.7773 -0.4498 -8.3777 18 14 9.0523 -1.8855 -7.7114 19 1 9.2620 -2.8463 -8.8242 20 1 9.8657 -0.6663 -7.9503 21 1 9.4657 -2.5134 -6.4307 22 6 4.1635 -2.3648 -5.9557 23 6 2.8984 -1.6927 -5.5129 24 1 2.0483 -2.2374 -5.9237 25 6 2.7472 -1.6228 -3.9862 26 6 2.0323 -0.7104 1.2304 27 6 1.7684 -2.0391 1.5788 28 7 2.3697 -2.2912 2.7133 29 7 3.0366 -1.1293 3.1228 30 6 3.8349 -0.9782 4.3419 31 6 2.8138 -0.1740 2.1961 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 3.1263 -0.7995 -1.2056 36 1 1.6053 -1.7197 -1.2952 37 1 0.6813 -0.0635 -5.3409 38 1 1.6844 1.3471 -4.8778 39 1 4.1815 0.4694 -4.4709 40 1 3.9572 1.5779 -5.8386 41 1 6.1682 0.2518 -5.6670 42 1 5.3514 0.3517 -7.2360 43 1 7.3710 0.0247 -8.9805 44 1 4.4968 -3.0236 -5.1537 45 1 3.9337 -2.9839 -6.8229 46 1 3.7289 -1.5734 -3.5149 47 1 2.2010 -2.4936 -3.6239 48 1 1.1716 -2.7364 1.0099 49 1 3.1942 -0.6393 5.1560 50 1 4.2808 -1.9372 4.6055 51 1 4.6236 -0.2455 4.1712 52 1 3.1914 0.8376 2.2209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088049415.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:58 Heat of formation + Delta-G solvation = 68.643785 kcal Electronic energy + Delta-G solvation = -31046.496701 eV Core-core repulsion = 27048.345201 eV Total energy + Delta-G solvation = -3998.151500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.47018 -40.33015 -38.53426 -35.76194 -35.21257 -32.97847 -32.56941 -31.53179 -30.43032 -29.84818 -28.44987 -27.23744 -26.75073 -25.42586 -23.67574 -22.70131 -21.96227 -21.46750 -21.24441 -19.91807 -18.88415 -17.86611 -17.22606 -17.01043 -16.51998 -15.97768 -15.69049 -15.41723 -14.88869 -14.64938 -14.50554 -14.30006 -13.93323 -13.77258 -13.53111 -13.25076 -13.16670 -13.03394 -12.93716 -12.79359 -12.73245 -12.45394 -12.32749 -12.10617 -11.73510 -11.55698 -11.25159 -11.21745 -11.13650 -11.09264 -10.74325 -10.55052 -10.53514 -10.28972 -10.19572 -9.80636 -9.68012 -9.63447 -9.54736 -9.51990 -8.56223 -8.52088 -8.40788 -6.61239 -5.62896 -3.27967 1.67344 2.29283 2.58753 2.77834 3.14548 3.36742 3.44857 3.48460 4.22914 4.47895 4.55989 4.60005 4.77708 4.79137 4.80562 4.87702 5.02998 5.04323 5.06183 5.15396 5.26272 5.33259 5.41739 5.47209 5.49443 5.56706 5.58564 5.61009 5.61809 5.76813 5.85353 5.88253 5.97895 6.01721 6.04309 6.20114 6.25427 6.30365 6.35171 6.35735 6.49374 6.56810 6.62050 6.69803 6.76824 6.80275 6.87069 7.31234 7.48224 7.68835 7.81235 7.93375 8.30762 8.53071 9.28747 9.98899 10.28259 11.22831 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.002542 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.875705 B =11014.057699 C =12523.832480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.006 3.994 3 H 0.081 0.919 4 C -0.128 4.128 5 C 0.529 3.471 6 O -0.547 6.547 7 N -0.615 5.615 8 C 0.107 3.893 9 C -0.083 4.083 10 H 0.100 0.900 11 C -0.119 4.119 12 C 0.156 3.844 13 N -0.585 5.585 14 C -0.269 4.269 15 H 0.065 0.935 16 C 0.006 3.994 17 N -0.888 5.888 18 Si 0.897 3.103 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.176 3.824 23 C -0.099 4.099 24 H 0.072 0.928 25 C 0.110 3.890 26 C -0.227 4.227 27 C 0.056 3.944 28 N -0.299 5.299 29 N -0.380 5.380 30 C 0.103 3.897 31 C 0.056 3.944 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.016 0.984 42 H 0.081 0.919 43 H 0.253 0.747 44 H 0.014 0.986 45 H 0.023 0.977 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.180 0.820 49 H 0.072 0.928 50 H 0.088 0.912 51 H 0.087 0.913 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 0.587 19.226 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 H 0.099 0.901 4 C -0.167 4.167 5 C 0.318 3.682 6 O -0.426 6.426 7 N -0.349 5.349 8 C -0.016 4.016 9 C -0.102 4.102 10 H 0.118 0.882 11 C -0.157 4.157 12 C 0.031 3.969 13 N -0.309 5.309 14 C -0.399 4.399 15 H 0.082 0.918 16 C -0.194 4.194 17 N -0.532 5.532 18 Si 0.726 3.274 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.049 3.951 23 C -0.118 4.118 24 H 0.091 0.909 25 C -0.013 4.013 26 C -0.238 4.238 27 C -0.130 4.130 28 N -0.121 5.121 29 N -0.162 5.162 30 C -0.039 4.039 31 C -0.089 4.089 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.041 0.959 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.197 0.803 49 H 0.091 0.909 50 H 0.107 0.893 51 H 0.105 0.895 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.727 0.432 20.354 23.012 hybrid contribution 0.998 0.302 -0.677 1.243 sum -9.729 0.734 19.677 21.963 Atomic orbital electron populations 1.21921 0.94234 1.01406 1.02751 1.19119 0.95904 0.98153 0.88193 0.90053 1.21707 1.03063 1.00007 0.91973 1.20321 0.79018 0.85419 0.83400 1.90643 1.40943 1.24924 1.86070 1.48762 1.54958 1.25560 1.05649 1.22669 0.97739 0.98278 0.82881 1.22281 0.94686 0.94447 0.98793 0.88168 1.21572 0.95493 0.98678 0.99989 1.20245 0.92049 0.83266 1.01357 1.42672 1.11420 1.01458 1.75398 1.19107 0.97823 1.00566 1.22359 0.91757 1.24963 0.99240 0.99217 0.95952 1.69995 1.33740 1.25850 1.23598 0.86374 0.85695 0.77467 0.77834 1.21480 1.21558 1.20451 1.19337 0.86218 0.92285 0.97210 1.21501 0.99895 0.97227 0.93212 0.90920 1.22186 0.96013 0.86050 0.97061 1.20085 1.07889 0.95360 1.00489 1.23733 0.99225 0.96135 0.93956 1.77351 1.13430 1.06011 1.15280 1.48438 1.40309 1.08477 1.18988 1.21836 0.94384 1.04099 0.83574 1.22360 1.00216 0.95690 0.90669 0.93147 0.90501 0.93378 0.88962 0.89082 0.91910 0.90520 0.93414 0.92624 0.96602 0.90197 0.93713 0.96871 0.95861 0.90840 0.91576 0.80259 0.90897 0.89343 0.89485 0.81012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.82 37.16 0.33 -1.20 16 2 C 0.01 0.07 2.40 -91.77 -0.22 -0.15 16 3 H 0.08 0.92 7.92 -51.92 -0.41 0.51 16 4 C -0.13 -1.39 4.24 -27.88 -0.12 -1.51 16 5 C 0.53 7.39 7.57 -10.99 -0.08 7.30 16 6 O -0.55 -9.07 14.22 5.56 0.08 -8.99 16 7 N -0.62 -8.62 2.80 -169.41 -0.47 -9.09 16 8 C 0.11 1.52 6.25 -1.63 -0.01 1.51 16 9 C -0.08 -1.33 3.78 -88.36 -0.33 -1.66 16 10 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 11 C -0.12 -2.20 4.98 -27.50 -0.14 -2.33 16 12 C 0.16 3.63 5.13 -5.91 -0.03 3.60 16 13 N -0.59 -14.12 3.23 -179.58 -0.58 -14.70 16 14 C -0.27 -7.24 9.26 -15.06 -0.14 -7.38 16 15 H 0.06 1.71 7.94 -52.49 -0.42 1.30 16 16 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 17 N -0.89 -25.19 10.92 55.49 0.61 -24.58 16 18 Si 0.90 21.40 29.62 -169.99 -5.03 16.37 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.18 3.47 5.67 -6.89 -0.04 3.43 16 23 C -0.10 -1.54 2.68 -91.23 -0.24 -1.78 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 25 C 0.11 1.48 5.19 -3.13 -0.02 1.47 16 26 C -0.23 -2.29 4.80 -105.06 -0.50 -2.80 16 27 C 0.06 0.58 11.54 -17.36 -0.20 0.38 16 28 N -0.30 -3.52 12.58 30.62 0.39 -3.14 16 29 N -0.38 -3.64 4.01 -68.16 -0.27 -3.92 16 30 C 0.10 0.55 11.47 59.85 0.69 1.24 16 31 C 0.06 0.52 11.38 -17.22 -0.20 0.32 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.96 5.95 -51.93 -0.31 0.65 16 34 H 0.05 0.45 8.02 -51.93 -0.42 0.03 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.15 7.93 -51.93 -0.41 0.74 16 39 H 0.05 0.88 6.77 -51.93 -0.35 0.52 16 40 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 41 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.08 2.13 5.75 -51.93 -0.30 1.83 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.01 0.26 7.78 -51.93 -0.40 -0.14 16 45 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 46 H 0.07 1.08 7.83 -51.93 -0.41 0.67 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.18 1.48 8.06 -52.49 -0.42 1.05 16 49 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 52 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -32.77 404.94 -9.44 -42.20 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.90 Total: -0.78 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.34 Total: 0.52 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.34 Total: -55.42 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.77 -9.44 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088049415.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.848 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds