Wall clock time and date at job start Wed Apr 1 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46779 * 2 1 4 4 C 1.53003 * 109.46838 * 240.00128 * 2 1 3 5 5 C 1.50698 * 109.46943 * 65.00204 * 4 2 1 6 6 O 1.21281 * 120.00553 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99911 * 179.97438 * 5 4 2 8 8 C 1.47760 * 125.82032 * 179.71499 * 7 5 4 9 9 C 1.56201 * 104.00530 * 154.06305 * 8 7 5 10 10 H 1.08999 * 113.91587 * 161.25689 * 9 8 7 11 11 C 1.52876 * 106.67460 * 286.46462 * 9 8 7 12 12 C 1.51602 * 111.55979 * 168.35362 * 11 9 8 13 13 N 1.44322 * 113.11345 * 320.91151 * 12 11 9 14 14 C 1.36931 * 116.35657 * 187.25908 * 13 12 11 15 15 H 1.08000 * 119.99947 * 152.49790 * 14 13 12 16 16 C 1.38813 * 119.99826 * 332.50043 * 14 13 12 17 17 N 1.31619 * 120.00008 * 335.32171 * 16 14 13 18 18 Si 1.86798 * 119.99924 * 155.32624 * 16 14 13 19 19 H 1.48507 * 109.47363 * 94.87098 * 18 16 14 20 20 H 1.48499 * 109.47009 * 214.86612 * 18 16 14 21 21 H 1.48499 * 109.47166 * 334.86867 * 18 16 14 22 22 C 1.43996 * 127.28777 * 7.27880 * 13 12 11 23 23 C 1.49950 * 116.09787 * 2.48468 * 22 13 12 24 24 H 1.09003 * 108.82617 * 141.04692 * 23 22 13 25 25 C 1.47620 * 125.81863 * 0.02562 * 7 5 4 26 26 C 1.50696 * 109.47051 * 119.99933 * 2 1 3 27 27 C 1.39871 * 126.03531 * 59.69313 * 26 2 1 28 28 N 1.30845 * 108.19805 * 180.26031 * 27 26 2 29 29 N 1.40084 * 108.20502 * 359.97438 * 28 27 26 30 30 C 1.46507 * 126.03291 * 180.02562 * 29 28 27 31 31 C 1.34948 * 107.92781 * 0.02562 * 29 28 27 32 32 H 1.09007 * 109.47290 * 300.00346 * 1 2 3 33 33 H 1.09007 * 109.47409 * 59.99674 * 1 2 3 34 34 H 1.08993 * 109.47251 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46771 * 184.99914 * 4 2 1 36 36 H 1.08995 * 109.47245 * 304.99950 * 4 2 1 37 37 H 1.08999 * 110.50115 * 272.79910 * 8 7 5 38 38 H 1.08996 * 110.49906 * 35.48519 * 8 7 5 39 39 H 1.08997 * 109.06979 * 47.80918 * 11 9 8 40 40 H 1.09010 * 109.05571 * 288.88538 * 11 9 8 41 41 H 1.09000 * 108.75533 * 199.97285 * 12 11 9 42 42 H 1.09004 * 108.66139 * 81.78185 * 12 11 9 43 43 H 0.97003 * 120.00129 * 179.97438 * 17 16 14 44 44 H 1.09001 * 108.15563 * 240.76263 * 22 13 12 45 45 H 1.09007 * 108.15598 * 124.20624 * 22 13 12 46 46 H 1.09004 * 110.07947 * 299.81968 * 25 7 5 47 47 H 1.09001 * 110.08290 * 61.37523 * 25 7 5 48 48 H 1.07992 * 125.90631 * 0.25840 * 27 26 2 49 49 H 1.09000 * 109.46857 * 269.97407 * 30 29 28 50 50 H 1.08994 * 109.47149 * 29.97777 * 30 29 28 51 51 H 1.08997 * 109.46984 * 149.98064 * 30 29 28 52 52 H 1.08000 * 126.12574 * 179.97438 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0109 1.0871 -2.3633 7 7 1.9852 -0.3913 -3.7001 8 6 1.6583 0.2627 -4.9842 9 6 2.7860 -0.2191 -5.9517 10 1 2.5411 -0.1046 -7.0076 11 6 4.0568 0.5309 -5.5520 12 6 5.2832 -0.0523 -6.2259 13 7 5.2557 -1.4932 -6.3034 14 6 6.3958 -2.0993 -6.7591 15 1 6.6343 -3.1054 -6.4469 16 6 7.2452 -1.4207 -7.6221 17 7 6.7773 -0.4498 -8.3777 18 14 9.0523 -1.8855 -7.7114 19 1 9.2620 -2.8463 -8.8242 20 1 9.8657 -0.6663 -7.9503 21 1 9.4657 -2.5134 -6.4307 22 6 4.1635 -2.3648 -5.9557 23 6 2.8984 -1.6927 -5.5129 24 1 2.0483 -2.2374 -5.9237 25 6 2.7472 -1.6228 -3.9862 26 6 2.0323 -0.7104 1.2304 27 6 1.7684 -2.0391 1.5788 28 7 2.3697 -2.2912 2.7133 29 7 3.0366 -1.1293 3.1228 30 6 3.8349 -0.9782 4.3419 31 6 2.8138 -0.1740 2.1961 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 3.1263 -0.7995 -1.2056 36 1 1.6053 -1.7197 -1.2952 37 1 0.6813 -0.0635 -5.3409 38 1 1.6844 1.3471 -4.8778 39 1 4.1815 0.4694 -4.4709 40 1 3.9572 1.5779 -5.8386 41 1 6.1682 0.2518 -5.6670 42 1 5.3514 0.3517 -7.2360 43 1 7.3710 0.0247 -8.9805 44 1 4.4968 -3.0236 -5.1537 45 1 3.9337 -2.9839 -6.8229 46 1 3.7289 -1.5734 -3.5149 47 1 2.2010 -2.4936 -3.6239 48 1 1.1716 -2.7364 1.0099 49 1 3.1942 -0.6393 5.1560 50 1 4.2808 -1.9372 4.6055 51 1 4.6236 -0.2455 4.1712 52 1 3.1914 0.8376 2.2209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088049415.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:57 Heat of formation + Delta-G solvation = 50.170209 kcal Electronic energy + Delta-G solvation = -31047.297775 eV Core-core repulsion = 27048.345201 eV Total energy + Delta-G solvation = -3998.952574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.18414 -41.52233 -39.79134 -37.30818 -36.13479 -34.18767 -33.62195 -33.07387 -32.05651 -30.65110 -29.64301 -28.33385 -27.33671 -27.01991 -25.21845 -23.75553 -23.40937 -22.79036 -21.96871 -20.72878 -19.91372 -19.35685 -18.85698 -18.08524 -17.33514 -17.21726 -16.84508 -16.49923 -16.27239 -15.83705 -15.70011 -15.49348 -15.24396 -15.04453 -14.72052 -14.44679 -14.40417 -14.06239 -13.84950 -13.71828 -13.63361 -13.56878 -13.32208 -13.21690 -13.08247 -12.94096 -12.85224 -12.52399 -12.34011 -12.21367 -12.08362 -12.00840 -11.93442 -11.76755 -11.47422 -11.32942 -11.21759 -11.14972 -10.69295 -10.50503 -10.33530 -9.56189 -9.26898 -8.63599 -7.67194 -5.37457 0.98740 1.45435 1.48593 1.58267 1.70846 1.72696 1.84140 2.10171 2.52521 3.23648 3.39532 3.54966 3.65959 3.78286 3.83931 3.89042 4.00335 4.12986 4.20628 4.24869 4.35298 4.38861 4.44990 4.46756 4.52132 4.58733 4.68433 4.69854 4.71209 4.72244 4.78575 4.82080 4.83855 4.88472 4.95641 5.03248 5.08186 5.10896 5.12166 5.22850 5.27456 5.34341 5.40052 5.44933 5.45705 5.53416 5.71008 5.76632 5.96196 6.16587 6.46351 6.60486 6.77654 7.23459 7.24024 8.08043 8.26294 9.13833 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.002542 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.875705 B =11014.057699 C =12523.832480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.015 3.985 3 H 0.069 0.931 4 C -0.120 4.120 5 C 0.527 3.473 6 O -0.576 6.576 7 N -0.617 5.617 8 C 0.116 3.884 9 C -0.082 4.082 10 H 0.097 0.903 11 C -0.107 4.107 12 C 0.165 3.835 13 N -0.597 5.597 14 C -0.282 4.282 15 H 0.064 0.936 16 C -0.044 4.044 17 N -0.916 5.916 18 Si 0.957 3.043 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.273 1.273 22 C 0.172 3.828 23 C -0.096 4.096 24 H 0.100 0.900 25 C 0.118 3.882 26 C -0.240 4.240 27 C 0.051 3.949 28 N -0.336 5.336 29 N -0.384 5.384 30 C 0.094 3.906 31 C 0.057 3.943 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.061 0.939 41 H -0.016 1.016 42 H 0.047 0.953 43 H 0.249 0.751 44 H 0.023 0.977 45 H 0.012 0.988 46 H 0.062 0.938 47 H 0.100 0.900 48 H 0.196 0.804 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.110 0.890 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 -0.269 20.860 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.005 4.005 3 H 0.088 0.912 4 C -0.160 4.160 5 C 0.318 3.682 6 O -0.456 6.456 7 N -0.351 5.351 8 C -0.007 4.007 9 C -0.101 4.101 10 H 0.115 0.885 11 C -0.145 4.145 12 C 0.040 3.960 13 N -0.321 5.321 14 C -0.413 4.413 15 H 0.082 0.918 16 C -0.241 4.241 17 N -0.561 5.561 18 Si 0.785 3.215 19 H -0.210 1.210 20 H -0.219 1.219 21 H -0.198 1.198 22 C 0.047 3.953 23 C -0.115 4.115 24 H 0.118 0.882 25 C -0.005 4.005 26 C -0.251 4.251 27 C -0.135 4.135 28 N -0.158 5.158 29 N -0.166 5.166 30 C -0.046 4.046 31 C -0.090 4.090 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.003 0.997 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.040 0.960 45 H 0.030 0.970 46 H 0.080 0.920 47 H 0.118 0.882 48 H 0.213 0.787 49 H 0.104 0.896 50 H 0.106 0.894 51 H 0.129 0.871 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.540 -0.458 22.013 24.859 hybrid contribution 1.274 0.574 -1.156 1.814 sum -10.266 0.116 20.857 23.247 Atomic orbital electron populations 1.21841 0.94320 1.01851 1.01699 1.18978 0.95713 0.97502 0.88303 0.91227 1.21716 1.03197 1.00531 0.90524 1.20831 0.78311 0.85154 0.83920 1.90641 1.42279 1.26280 1.86426 1.48821 1.54922 1.25684 1.05667 1.22550 0.97697 0.97862 0.82543 1.22215 0.94004 0.94722 0.99175 0.88517 1.21396 0.94667 0.99007 0.99410 1.19965 0.93277 0.83313 0.99471 1.42906 1.12226 1.01951 1.74985 1.19430 0.99284 1.00654 1.21906 0.91846 1.25682 1.02728 0.99623 0.96101 1.70152 1.34628 1.26998 1.24371 0.85429 0.81196 0.76926 0.77932 1.21046 1.21943 1.19768 1.19457 0.86948 0.91969 0.96924 1.21428 0.98432 0.96665 0.94980 0.88158 1.22130 0.96076 0.87014 0.95231 1.20070 1.08881 0.95436 1.00748 1.24038 0.99070 0.96585 0.93787 1.77292 1.14742 1.07588 1.16204 1.48771 1.40055 1.07933 1.19836 1.22147 0.94907 1.04928 0.82666 1.22821 0.99430 0.96591 0.90159 0.93043 0.92589 0.92172 0.88777 0.86991 0.89839 0.91392 0.93193 0.92058 0.99750 0.93544 0.94138 0.95955 0.97032 0.91978 0.88197 0.78735 0.89632 0.89356 0.87130 0.78559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.82 71.98 0.63 -2.08 16 2 C 0.02 0.29 2.40 -11.54 -0.03 0.26 16 3 H 0.07 1.49 7.92 -2.38 -0.02 1.47 16 4 C -0.12 -2.33 4.24 29.85 0.13 -2.20 16 5 C 0.53 13.62 7.57 87.66 0.66 14.28 16 6 O -0.58 -18.36 14.22 -3.03 -0.04 -18.41 16 7 N -0.62 -15.69 2.80 -808.27 -2.27 -17.96 16 8 C 0.12 3.03 6.25 87.25 0.55 3.58 16 9 C -0.08 -2.50 3.78 -9.33 -0.04 -2.54 16 10 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 11 C -0.11 -3.92 4.98 30.09 0.15 -3.77 16 12 C 0.17 7.92 5.13 86.33 0.44 8.36 16 13 N -0.60 -29.06 3.23 -722.08 -2.33 -31.39 16 14 C -0.28 -15.38 9.26 84.03 0.78 -14.60 16 15 H 0.06 3.39 7.94 -2.91 -0.02 3.37 16 16 C -0.04 -2.46 4.94 84.86 0.42 -2.04 16 17 N -0.92 -53.44 10.92 21.65 0.24 -53.20 16 18 Si 0.96 44.60 29.62 68.60 2.03 46.64 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 22 C 0.17 6.63 5.67 85.86 0.49 7.12 16 23 C -0.10 -2.75 2.68 -11.19 -0.03 -2.78 16 24 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 25 C 0.12 2.82 5.19 86.36 0.45 3.27 16 26 C -0.24 -4.40 4.80 -20.15 -0.10 -4.49 16 27 C 0.05 0.97 11.54 85.24 0.98 1.95 16 28 N -0.34 -7.46 12.58 -57.02 -0.72 -8.17 16 29 N -0.38 -6.68 4.01 -369.56 -1.48 -8.17 16 30 C 0.09 0.83 11.47 127.77 1.47 2.29 16 31 C 0.06 0.92 11.38 83.54 0.95 1.87 16 32 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.06 1.34 5.95 -2.38 -0.01 1.33 16 34 H 0.06 1.00 8.02 -2.39 -0.02 0.98 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 1.93 7.93 -2.39 -0.02 1.91 16 39 H 0.05 1.80 6.77 -2.39 -0.02 1.79 16 40 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 41 H -0.02 -0.83 8.12 -2.39 -0.02 -0.85 16 42 H 0.05 2.59 5.75 -2.39 -0.01 2.58 16 43 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.02 0.83 7.78 -2.39 -0.02 0.82 16 45 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.06 1.66 7.83 -2.39 -0.02 1.64 16 47 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.20 2.79 8.06 -2.91 -0.02 2.76 16 49 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 52 H 0.20 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -72.37 404.94 4.23 -68.14 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.89 Total: 14.02 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 7.91 Total: 8.49 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -6.56 Total: -118.89 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.04 Total: -18.41 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.64 kcal Total: -72.37 4.23 -68.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088049415.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.313 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds