Wall clock time and date at job start Wed Apr 1 2020 05:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47045 * 2 1 4 4 C 1.53001 * 109.46943 * 119.99969 * 2 1 3 5 5 C 1.50707 * 109.46799 * 294.99643 * 4 2 1 6 6 O 1.21277 * 120.00093 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99890 * 180.02562 * 5 4 2 8 8 C 1.48090 * 125.74336 * 180.02562 * 7 5 4 9 9 C 1.53850 * 103.41301 * 204.44722 * 8 7 5 10 10 H 1.09000 * 109.06380 * 73.84598 * 9 8 7 11 11 C 1.49841 * 114.34659 * 195.56589 * 9 8 7 12 12 C 1.51599 * 114.45570 * 66.00885 * 11 9 8 13 13 N 1.44533 * 112.99999 * 35.49757 * 12 11 9 14 14 C 1.36942 * 117.26602 * 150.68790 * 13 12 11 15 15 H 1.07996 * 119.99390 * 205.11022 * 14 13 12 16 16 C 1.38803 * 120.00117 * 25.11043 * 14 13 12 17 17 N 1.31625 * 120.00214 * 17.21575 * 16 14 13 18 18 Si 1.86798 * 120.00152 * 197.21978 * 16 14 13 19 19 H 1.48499 * 109.47577 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47007 * 300.00049 * 18 16 14 21 21 H 1.48500 * 109.47253 * 59.99607 * 18 16 14 22 22 C 1.44402 * 125.46370 * 330.40015 * 13 12 11 23 23 C 1.52993 * 113.17967 * 34.94605 * 22 13 12 24 24 H 1.08996 * 112.80446 * 84.26543 * 23 22 13 25 25 C 1.47460 * 125.74230 * 0.02590 * 7 5 4 26 26 C 1.50701 * 109.47115 * 239.99410 * 2 1 3 27 27 C 1.39866 * 126.04146 * 299.69255 * 26 2 1 28 28 N 1.30842 * 108.20230 * 179.81687 * 27 26 2 29 29 N 1.40089 * 108.20227 * 0.44349 * 28 27 26 30 30 C 1.46494 * 126.03356 * 179.74281 * 29 28 27 31 31 C 1.34942 * 107.92644 * 359.71178 * 29 28 27 32 32 H 1.09001 * 109.46850 * 60.00647 * 1 2 3 33 33 H 1.09005 * 109.47036 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47160 * 300.00219 * 1 2 3 35 35 H 1.08998 * 109.47208 * 175.00511 * 4 2 1 36 36 H 1.08993 * 109.47758 * 54.99842 * 4 2 1 37 37 H 1.09003 * 110.63554 * 322.92852 * 8 7 5 38 38 H 1.09003 * 110.63218 * 85.96482 * 8 7 5 39 39 H 1.09004 * 108.47102 * 187.51384 * 11 9 8 40 40 H 1.08999 * 108.47659 * 304.89918 * 11 9 8 41 41 H 1.08997 * 108.96610 * 274.49690 * 12 11 9 42 42 H 1.09003 * 108.68912 * 156.30132 * 12 11 9 43 43 H 0.97000 * 119.99736 * 179.97438 * 17 16 14 44 44 H 1.09008 * 108.73948 * 155.89563 * 22 13 12 45 45 H 1.09000 * 108.74604 * 274.10784 * 22 13 12 46 46 H 1.09002 * 110.03942 * 62.78374 * 25 7 5 47 47 H 1.08993 * 110.04564 * 301.33170 * 25 7 5 48 48 H 1.07999 * 125.90009 * 359.97438 * 27 26 2 49 49 H 1.09001 * 109.47032 * 269.96804 * 30 29 28 50 50 H 1.08998 * 109.47663 * 29.96833 * 30 29 28 51 51 H 1.09006 * 109.47468 * 149.97126 * 30 29 28 52 52 H 1.07998 * 126.12716 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 8 1.0110 1.0871 2.3632 7 7 1.9853 -0.3912 3.7002 8 6 1.6613 0.2685 4.9859 9 6 2.7551 -0.2471 5.9371 10 1 3.6974 0.2449 5.6961 11 6 2.4623 -0.0302 7.3905 12 6 1.2785 -0.8176 7.9166 13 7 1.1556 -2.1244 7.3114 14 6 0.5840 -3.1140 8.0660 15 1 0.8174 -4.1491 7.8650 16 6 -0.2952 -2.7866 9.0889 17 7 -0.8436 -1.5907 9.1279 18 14 -0.7000 -4.0432 10.4105 19 1 -1.6566 -3.4514 11.3800 20 1 -1.3105 -5.2425 9.7828 21 1 0.5449 -4.4350 11.1190 22 6 1.5797 -2.4723 5.9756 23 6 2.8455 -1.7350 5.5345 24 1 3.7590 -2.2246 5.8720 25 6 2.7475 -1.6212 3.9840 26 6 2.0323 -0.7105 -1.2304 27 6 1.7785 -2.0427 -1.5727 28 7 2.3776 -2.2942 -2.7084 29 7 3.0410 -1.1311 -3.1201 30 6 3.8400 -0.9803 -4.3387 31 6 2.8135 -0.1741 -2.1963 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8899 35 1 3.1263 -0.7994 1.2057 36 1 1.6054 -1.7197 1.2953 37 1 1.7184 1.3525 4.8866 38 1 0.6743 -0.0347 5.3352 39 1 3.3468 -0.3041 7.9656 40 1 2.2668 1.0304 7.5490 41 1 0.3650 -0.2551 7.7239 42 1 1.3911 -0.9397 8.9939 43 1 -1.4583 -1.3621 9.8426 44 1 1.7677 -3.5453 5.9362 45 1 0.7761 -2.2324 5.2793 46 1 3.7453 -1.5505 3.5510 47 1 2.2243 -2.4869 3.5782 48 1 1.1877 -2.7422 -0.9999 49 1 4.8775 -1.2392 -4.1272 50 1 3.4509 -1.6418 -5.1126 51 1 3.7863 0.0526 -4.6829 52 1 3.1877 0.8387 -2.2233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088049416.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:05 Heat of formation + Delta-G solvation = 68.411863 kcal Electronic energy + Delta-G solvation = -30937.455099 eV Core-core repulsion = 26939.293542 eV Total energy + Delta-G solvation = -3998.161557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.48360 -40.25714 -38.51029 -35.64045 -35.16887 -32.99979 -32.75337 -31.38224 -30.33185 -29.85430 -28.38145 -26.93617 -26.75705 -25.25872 -24.08974 -22.64187 -21.78243 -21.51793 -21.30252 -19.92350 -18.83979 -17.99678 -17.20191 -16.63196 -16.42396 -15.90624 -15.71258 -15.46372 -14.89612 -14.72963 -14.53250 -14.13616 -13.85519 -13.64370 -13.52418 -13.31878 -13.16315 -13.00266 -12.94636 -12.83398 -12.70692 -12.43498 -12.33443 -12.06535 -11.66430 -11.46785 -11.28248 -11.15348 -11.08287 -10.87289 -10.68545 -10.61079 -10.54091 -10.22157 -10.11194 -9.92756 -9.69544 -9.65214 -9.50943 -9.39143 -8.57273 -8.43319 -8.33472 -6.65620 -5.71040 -3.19813 1.65074 2.27057 2.58175 2.84961 3.21417 3.39399 3.45512 3.46332 4.20782 4.49443 4.56434 4.59736 4.75149 4.79431 4.81344 4.90824 5.00797 5.04493 5.08820 5.18652 5.28829 5.41239 5.42874 5.48274 5.50318 5.58804 5.62332 5.66748 5.71763 5.79745 5.88334 5.89539 6.03161 6.08861 6.11538 6.24571 6.28270 6.32378 6.38792 6.43205 6.51936 6.54127 6.59074 6.72791 6.74907 6.85019 6.92998 7.44398 7.46753 7.77336 7.81566 7.86471 8.38571 8.49786 9.30449 9.98515 10.32343 11.30828 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.002147 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.510196 B =13037.825166 C =13416.004408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.006 3.994 3 H 0.080 0.920 4 C -0.127 4.127 5 C 0.527 3.473 6 O -0.545 6.545 7 N -0.616 5.616 8 C 0.115 3.885 9 C -0.082 4.082 10 H 0.060 0.940 11 C -0.125 4.125 12 C 0.188 3.812 13 N -0.590 5.590 14 C -0.267 4.267 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.291 1.291 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.167 3.833 23 C -0.108 4.108 24 H 0.095 0.905 25 C 0.104 3.896 26 C -0.225 4.225 27 C 0.056 3.944 28 N -0.300 5.300 29 N -0.381 5.381 30 C 0.103 3.897 31 C 0.054 3.946 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.010 0.990 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.182 0.818 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.370 3.668 -21.844 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 H 0.099 0.901 4 C -0.167 4.167 5 C 0.316 3.684 6 O -0.424 6.424 7 N -0.350 5.350 8 C -0.006 4.006 9 C -0.101 4.101 10 H 0.079 0.921 11 C -0.164 4.164 12 C 0.062 3.938 13 N -0.313 5.313 14 C -0.397 4.397 15 H 0.083 0.917 16 C -0.194 4.194 17 N -0.546 5.546 18 Si 0.732 3.268 19 H -0.217 1.217 20 H -0.209 1.209 21 H -0.211 1.211 22 C 0.040 3.960 23 C -0.128 4.128 24 H 0.113 0.887 25 C -0.019 4.019 26 C -0.236 4.236 27 C -0.130 4.130 28 N -0.121 5.121 29 N -0.163 5.163 30 C -0.039 4.039 31 C -0.091 4.091 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.027 0.973 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.199 0.801 49 H 0.092 0.908 50 H 0.106 0.894 51 H 0.104 0.896 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 11.234 3.495 -22.949 25.789 hybrid contribution -0.274 -0.118 1.356 1.388 sum 10.961 3.377 -21.593 24.450 Atomic orbital electron populations 1.21931 0.94061 1.01632 1.02859 1.19125 0.96103 0.98022 0.88125 0.90118 1.21704 1.02612 1.00250 0.92097 1.20303 0.79196 0.85529 0.83388 1.90652 1.40584 1.25088 1.86027 1.48796 1.55069 1.25294 1.05850 1.22228 0.99687 0.97194 0.81526 1.21149 0.97691 0.95463 0.95832 0.92114 1.21007 1.01307 1.00620 0.93510 1.19887 0.92914 0.84796 0.96174 1.42788 1.69605 1.08710 1.10153 1.19242 1.20339 0.88314 1.11817 0.91664 1.25007 0.96809 0.96808 1.00795 1.70102 1.30995 1.20405 1.33117 0.86384 0.77699 0.80863 0.81898 1.21685 1.20938 1.21107 1.20320 0.91672 0.96485 0.87498 1.22816 1.01177 0.96717 0.92119 0.88688 1.22502 0.95215 0.86951 0.97250 1.20116 1.07710 0.95248 1.00570 1.23775 0.99093 0.96163 0.93949 1.77363 1.13562 1.05984 1.15174 1.48435 1.40324 1.08464 1.19099 1.21823 0.94586 1.03459 0.83997 1.22341 1.00267 0.95666 0.90864 0.93152 0.93243 0.90335 0.89292 0.88964 0.91045 0.90068 0.92892 0.92600 0.94422 0.92832 0.93655 0.93875 0.97271 0.92005 0.91093 0.80145 0.90843 0.89413 0.89590 0.81066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.83 37.16 0.33 -1.37 16 2 C 0.01 0.07 2.40 -91.77 -0.22 -0.15 16 3 H 0.08 0.89 7.92 -51.93 -0.41 0.48 16 4 C -0.13 -1.37 4.23 -27.88 -0.12 -1.49 16 5 C 0.53 7.72 7.57 -10.98 -0.08 7.64 16 6 O -0.55 -9.66 14.25 5.56 0.08 -9.58 16 7 N -0.62 -9.19 3.33 -169.36 -0.56 -9.75 16 8 C 0.12 1.94 5.84 -2.73 -0.02 1.93 16 9 C -0.08 -1.30 2.69 -91.01 -0.25 -1.54 16 10 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.13 -2.25 5.46 -29.01 -0.16 -2.41 16 12 C 0.19 4.36 4.37 -5.80 -0.03 4.34 16 13 N -0.59 -14.23 3.17 -177.28 -0.56 -14.79 16 14 C -0.27 -7.19 9.32 -15.06 -0.14 -7.33 16 15 H 0.07 1.72 7.70 -52.49 -0.40 1.31 16 16 C 0.00 0.13 4.81 -17.43 -0.08 0.05 16 17 N -0.90 -25.90 10.79 55.49 0.60 -25.30 16 18 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.17 3.31 4.95 -5.16 -0.03 3.28 16 23 C -0.11 -1.67 3.98 -88.41 -0.35 -2.02 16 24 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 25 C 0.10 1.34 5.63 -2.04 -0.01 1.33 16 26 C -0.22 -2.22 4.80 -105.05 -0.50 -2.72 16 27 C 0.06 0.59 11.54 -17.36 -0.20 0.38 16 28 N -0.30 -3.43 12.58 30.62 0.39 -3.04 16 29 N -0.38 -3.43 4.01 -68.17 -0.27 -3.71 16 30 C 0.10 0.48 11.47 59.84 0.69 1.17 16 31 C 0.05 0.46 11.38 -17.22 -0.20 0.27 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.53 8.03 -51.93 -0.42 0.11 16 34 H 0.08 1.11 5.95 -51.93 -0.31 0.80 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 38 H 0.08 1.63 7.07 -51.93 -0.37 1.26 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.04 0.99 7.27 -51.93 -0.38 0.61 16 42 H 0.05 1.38 6.94 -51.93 -0.36 1.02 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.04 0.84 7.72 -51.92 -0.40 0.44 16 45 H 0.01 0.21 6.90 -51.93 -0.36 -0.15 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.86 7.74 -51.93 -0.40 0.46 16 48 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 49 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 52 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 403.60 15.07 6.08 6.08 Total: -1.00 -33.23 403.60 -9.51 -42.74 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.86 Total: -0.51 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.37 Total: 1.35 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.42 Total: -56.60 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.23 -9.51 -42.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088049416.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.150 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds