Wall clock time and date at job start Wed Apr 1 2020 04:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46841 * 2 1 4 4 C 1.52993 * 109.47232 * 119.99892 * 2 1 3 5 5 C 1.50696 * 109.47477 * 295.00366 * 4 2 1 6 6 C 1.39872 * 126.04479 * 90.01944 * 5 4 2 7 7 N 1.30835 * 108.20562 * 179.97438 * 6 5 4 8 8 N 1.40078 * 108.20710 * 0.02562 * 7 6 5 9 9 C 1.46494 * 126.03873 * 179.97438 * 8 7 6 10 10 C 1.34955 * 107.92383 * 359.75396 * 8 7 6 11 11 C 1.50696 * 109.46849 * 240.00204 * 2 1 3 12 12 O 1.21286 * 120.00142 * 267.10501 * 11 2 1 13 13 N 1.34776 * 120.00290 * 87.11768 * 11 2 1 14 14 C 1.47756 * 125.82322 * 186.06619 * 13 11 2 15 15 C 1.56200 * 104.00734 * 154.05735 * 14 13 11 16 16 H 1.09001 * 113.91308 * 161.26101 * 15 14 13 17 17 C 1.52880 * 106.67288 * 286.46027 * 15 14 13 18 18 C 1.51606 * 111.55391 * 168.35189 * 17 15 14 19 19 N 1.44325 * 113.11472 * 320.91767 * 18 17 15 20 20 C 1.36929 * 116.35321 * 187.25863 * 19 18 17 21 21 H 1.08006 * 119.99920 * 149.70378 * 20 19 18 22 22 C 1.38811 * 120.00397 * 329.69964 * 20 19 18 23 23 N 1.31621 * 119.99851 * 334.04940 * 22 20 19 24 24 Si 1.86799 * 120.00517 * 154.04813 * 22 20 19 25 25 H 1.48494 * 109.47143 * 59.99731 * 24 22 20 26 26 H 1.48497 * 109.47327 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46867 * 300.00244 * 24 22 20 28 28 C 1.43994 * 127.28806 * 7.28100 * 19 18 17 29 29 C 1.49950 * 116.10046 * 2.47836 * 28 19 18 30 30 H 1.09004 * 108.82494 * 141.04970 * 29 28 19 31 31 C 1.47616 * 125.81789 * 6.36706 * 13 11 2 32 32 H 1.08995 * 109.46939 * 62.42426 * 1 2 3 33 33 H 1.08993 * 109.46971 * 302.42428 * 1 2 3 34 34 H 1.08998 * 109.46470 * 182.42410 * 1 2 3 35 35 H 1.09002 * 109.47111 * 54.99885 * 4 2 1 36 36 H 1.08994 * 109.47332 * 174.99865 * 4 2 1 37 37 H 1.08004 * 125.89288 * 359.96377 * 6 5 4 38 38 H 1.08999 * 109.47059 * 90.02762 * 9 8 7 39 39 H 1.09003 * 109.47486 * 210.02266 * 9 8 7 40 40 H 1.08997 * 109.47275 * 330.02486 * 9 8 7 41 41 H 1.08000 * 126.12705 * 180.24165 * 10 8 7 42 42 H 1.09006 * 110.50056 * 272.80265 * 14 13 11 43 43 H 1.09010 * 110.49911 * 35.47684 * 14 13 11 44 44 H 1.08995 * 109.06301 * 47.81899 * 17 15 14 45 45 H 1.09000 * 109.00060 * 288.85053 * 17 15 14 46 46 H 1.09001 * 108.75012 * 199.97666 * 18 17 15 47 47 H 1.09001 * 108.65642 * 81.78552 * 18 17 15 48 48 H 0.97000 * 120.00217 * 179.97438 * 23 22 20 49 49 H 1.09005 * 108.15485 * 240.75911 * 28 19 18 50 50 H 1.09001 * 108.15614 * 124.20514 * 28 19 18 51 51 H 1.09000 * 110.08484 * 299.82587 * 31 13 11 52 52 H 1.09003 * 110.08163 * 61.32806 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0570 2.4765 6 6 0.4575 -0.1031 3.2040 7 7 0.4707 0.7470 4.1984 8 7 1.6648 1.4765 4.1349 9 6 2.0797 2.5330 5.0610 10 6 2.3678 1.0307 3.0727 11 6 2.0323 -0.7104 -1.2305 12 8 2.2845 -1.8959 -1.1859 13 7 2.2016 -0.0283 -2.3805 14 6 2.5631 -0.6138 -3.6880 15 6 1.9833 0.3970 -4.7282 16 1 2.4207 0.3073 -5.7226 17 6 0.4665 0.2060 -4.7270 18 6 -0.2354 1.3174 -5.4824 19 7 0.3576 2.6146 -5.2618 20 6 -0.3132 3.6868 -5.7867 21 1 -0.2560 4.6499 -5.3013 22 6 -1.0668 3.5359 -6.9427 23 7 -0.7659 2.5884 -7.8053 24 14 -2.5078 4.6774 -7.2740 25 1 -2.0232 6.0793 -7.3422 26 1 -3.1440 4.3097 -8.5644 27 1 -3.5021 4.5501 -6.1784 28 6 1.5756 2.9077 -4.5520 29 6 2.3357 1.7253 -4.0298 30 1 3.4025 1.9075 -4.1600 31 6 2.0636 1.4319 -2.5472 32 1 -0.3633 0.4757 -0.9109 33 1 -0.3633 0.5510 0.8674 34 1 -0.3632 -1.0268 0.0435 35 1 1.6055 -1.7198 1.2951 36 1 3.1263 -0.7994 1.2055 37 1 -0.3314 -0.8068 2.9828 38 1 2.6430 2.0939 5.8844 39 1 2.7072 3.2521 4.5344 40 1 1.1978 3.0393 5.4533 41 1 3.3358 1.3884 2.7541 42 1 3.6462 -0.6878 -3.7869 43 1 2.1001 -1.5933 -3.8088 44 1 0.1099 0.1951 -3.6971 45 1 0.2287 -0.7487 -5.1961 46 1 -1.2784 1.3506 -5.1675 47 1 -0.1986 1.0920 -6.5482 48 1 -1.2927 2.4827 -8.6129 49 1 1.3303 3.5532 -3.7086 50 1 2.2321 3.4656 -5.2198 51 1 1.0534 1.7450 -2.2831 52 1 2.7910 1.9504 -1.9225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088155458.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:40 Heat of formation + Delta-G solvation = 47.618652 kcal Electronic energy + Delta-G solvation = -31309.740205 eV Core-core repulsion = 27310.676987 eV Total energy + Delta-G solvation = -3999.063218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.17477 -41.58362 -39.81678 -37.25487 -36.10152 -34.21175 -33.75106 -33.03773 -32.06575 -31.24647 -29.30687 -28.33344 -27.18397 -26.75171 -25.52821 -24.02223 -23.40917 -22.58666 -21.92955 -20.97452 -19.87777 -19.37115 -18.87637 -18.21320 -17.40914 -17.10033 -16.86218 -16.60877 -16.14046 -15.87834 -15.68384 -15.40970 -15.36232 -15.00108 -14.75256 -14.43883 -14.29226 -14.07832 -13.94982 -13.78787 -13.60889 -13.48776 -13.33901 -13.24306 -13.00123 -12.95300 -12.85573 -12.83490 -12.51980 -12.22094 -12.14118 -12.06387 -11.97987 -11.79204 -11.48611 -11.43612 -11.23046 -11.14981 -10.71722 -10.49898 -10.31260 -9.60722 -9.24708 -8.60588 -7.69199 -5.40009 0.99720 1.46092 1.49960 1.55914 1.63636 1.73704 1.80223 2.09767 2.52291 3.22165 3.36361 3.53411 3.67233 3.77941 3.82608 3.87093 3.94156 4.09926 4.16430 4.19761 4.35622 4.36817 4.45209 4.47143 4.51208 4.54483 4.58130 4.69108 4.70942 4.71817 4.73529 4.79708 4.87400 4.94208 4.94917 4.95990 5.03225 5.08757 5.10737 5.19694 5.23567 5.27109 5.32930 5.38301 5.40975 5.44015 5.71047 5.73672 5.92734 6.19760 6.46147 6.56286 6.78064 7.17617 7.23786 8.07225 8.27317 9.12378 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012979 B = 0.002587 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.861951 B =10818.742890 C =12012.067779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 H 0.104 0.896 4 C -0.010 4.010 5 C -0.244 4.244 6 C 0.046 3.954 7 N -0.338 5.338 8 N -0.382 5.382 9 C 0.093 3.907 10 C 0.063 3.937 11 C 0.532 3.468 12 O -0.582 6.582 13 N -0.615 5.615 14 C 0.115 3.885 15 C -0.081 4.081 16 H 0.097 0.903 17 C -0.107 4.107 18 C 0.165 3.835 19 N -0.594 5.594 20 C -0.287 4.287 21 H 0.062 0.938 22 C -0.039 4.039 23 N -0.913 5.913 24 Si 0.955 3.045 25 H -0.272 1.272 26 H -0.294 1.294 27 H -0.283 1.283 28 C 0.174 3.826 29 C -0.095 4.095 30 H 0.100 0.900 31 C 0.118 3.882 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.189 0.811 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.205 0.795 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.061 0.939 46 H -0.013 1.013 47 H 0.041 0.959 48 H 0.250 0.750 49 H 0.023 0.977 50 H 0.011 0.989 51 H 0.063 0.937 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.285 -2.360 21.868 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 H 0.122 0.878 4 C -0.049 4.049 5 C -0.256 4.256 6 C -0.139 4.139 7 N -0.160 5.160 8 N -0.164 5.164 9 C -0.047 4.047 10 C -0.083 4.083 11 C 0.322 3.678 12 O -0.462 6.462 13 N -0.348 5.348 14 C -0.007 4.007 15 C -0.100 4.100 16 H 0.115 0.885 17 C -0.145 4.145 18 C 0.040 3.960 19 N -0.319 5.319 20 C -0.417 4.417 21 H 0.080 0.920 22 C -0.237 4.237 23 N -0.557 5.557 24 Si 0.783 3.217 25 H -0.198 1.198 26 H -0.220 1.220 27 H -0.210 1.210 28 C 0.048 3.952 29 C -0.115 4.115 30 H 0.118 0.882 31 C -0.005 4.005 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.206 0.794 38 H 0.103 0.897 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.221 0.779 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.005 0.995 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.040 0.960 50 H 0.029 0.971 51 H 0.081 0.919 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.809 -2.525 23.013 25.144 hybrid contribution -0.825 0.232 -1.506 1.733 sum 8.984 -2.292 21.508 23.421 Atomic orbital electron populations 1.21654 0.92550 1.02423 1.02394 1.21256 0.97795 1.00870 0.91167 0.87828 1.19534 1.00692 0.96997 0.87682 1.20025 0.97479 1.05185 1.02886 1.24064 0.98862 0.98227 0.92761 1.77302 1.04066 1.10542 1.24084 1.48787 1.14023 1.30207 1.23414 1.22161 1.02109 0.87710 0.92705 1.22853 0.99494 0.96627 0.89370 1.20853 0.76292 0.86527 0.84101 1.90660 1.53227 1.17268 1.85087 1.48800 1.68450 1.08915 1.08647 1.22572 1.00116 0.96580 0.81457 1.22213 0.95201 0.94265 0.98355 0.88489 1.21393 0.95417 0.97984 0.99712 1.19907 0.92337 0.84189 0.99594 1.42851 1.23267 1.03334 1.62398 1.19345 1.25493 0.92118 1.04746 0.92042 1.25707 1.03177 0.99953 0.94844 1.70169 1.39400 1.36725 1.09397 0.85537 0.80391 0.79341 0.76435 1.19785 1.22009 1.20969 1.19449 0.86697 0.94744 0.94286 1.21427 1.01346 0.94704 0.93974 0.88176 1.22151 1.02189 0.79685 0.96429 0.93422 0.90401 0.92471 0.91358 0.90826 0.79391 0.89669 0.86785 0.89514 0.77866 0.89838 0.91457 0.93002 0.92017 0.99520 0.94108 0.94063 0.95962 0.97113 0.91871 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.83 71.98 0.64 -2.17 16 2 C -0.09 -1.82 2.32 -11.54 -0.03 -1.84 16 3 H 0.10 1.78 7.26 -2.39 -0.02 1.76 16 4 C -0.01 -0.19 4.65 29.84 0.14 -0.05 16 5 C -0.24 -4.32 4.78 -20.14 -0.10 -4.42 16 6 C 0.05 0.92 10.70 85.24 0.91 1.83 16 7 N -0.34 -7.47 12.57 -57.02 -0.72 -8.19 16 8 N -0.38 -6.22 4.01 -369.57 -1.48 -7.71 16 9 C 0.09 0.71 11.47 127.77 1.47 2.18 16 10 C 0.06 0.91 11.40 83.54 0.95 1.86 16 11 C 0.53 14.19 6.93 87.66 0.61 14.80 16 12 O -0.58 -19.48 16.54 -3.05 -0.05 -19.53 16 13 N -0.62 -15.82 2.80 -808.27 -2.27 -18.09 16 14 C 0.12 3.04 6.23 87.25 0.54 3.58 16 15 C -0.08 -2.47 3.77 -9.33 -0.04 -2.51 16 16 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 17 C -0.11 -3.90 4.98 30.10 0.15 -3.75 16 18 C 0.17 7.86 5.24 86.33 0.45 8.31 16 19 N -0.59 -28.75 3.21 -722.07 -2.32 -31.07 16 20 C -0.29 -15.53 9.21 84.03 0.77 -14.76 16 21 H 0.06 3.28 7.95 -2.91 -0.02 3.25 16 22 C -0.04 -2.15 4.91 84.86 0.42 -1.74 16 23 N -0.91 -53.07 11.13 21.65 0.24 -52.83 16 24 Si 0.95 44.43 29.63 68.60 2.03 46.46 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 28 C 0.17 6.63 5.67 85.86 0.49 7.12 16 29 C -0.10 -2.72 2.68 -11.19 -0.03 -2.75 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 31 C 0.12 2.81 4.75 86.36 0.41 3.22 16 32 H 0.05 1.13 7.94 -2.39 -0.02 1.11 16 33 H 0.08 1.51 6.57 -2.39 -0.02 1.50 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.46 8.02 -2.39 -0.02 1.44 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.20 1.42 8.06 -2.91 -0.02 1.39 16 42 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.07 1.92 7.99 -2.38 -0.02 1.90 16 44 H 0.05 1.85 6.77 -2.39 -0.02 1.84 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H -0.01 -0.70 8.12 -2.39 -0.02 -0.71 16 47 H 0.04 2.26 5.82 -2.39 -0.01 2.25 16 48 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 49 H 0.02 0.82 7.78 -2.38 -0.02 0.80 16 50 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.06 1.69 7.63 -2.39 -0.02 1.67 16 52 H 0.10 1.76 8.04 -2.39 -0.02 1.74 16 Total: -1.00 -72.81 405.47 4.09 -68.72 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.89 Total: 13.32 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 7.76 Total: 8.91 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -6.54 Total: -117.88 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.05 Total: -19.53 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -72.81 4.09 -68.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088155458.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.337 kcal (2) G-P(sol) polarization free energy of solvation -72.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds