Wall clock time and date at job start Wed Apr 1 2020 04:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47492 * 2 1 4 4 C 1.50707 * 109.47121 * 120.00251 * 2 1 3 5 5 O 1.21280 * 119.99943 * 120.00158 * 4 2 1 6 6 N 1.34772 * 119.99587 * 299.99404 * 4 2 1 7 7 C 1.46504 * 119.99938 * 179.97438 * 6 4 2 8 8 H 1.08993 * 108.44953 * 325.00549 * 7 6 4 9 9 C 1.47098 * 108.51203 * 82.69277 * 7 6 4 10 10 C 1.54859 * 110.32162 * 184.05824 * 9 7 6 11 11 N 1.44576 * 109.59859 * 288.72863 * 10 9 7 12 12 C 1.36934 * 118.64506 * 270.70852 * 11 10 9 13 13 H 1.07996 * 120.00497 * 30.46946 * 12 11 10 14 14 C 1.38815 * 119.99711 * 210.47277 * 12 11 10 15 15 N 1.31621 * 120.00525 * 10.92007 * 14 12 11 16 16 Si 1.86803 * 119.99911 * 190.91581 * 14 12 11 17 17 H 1.48499 * 109.47246 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47024 * 120.00269 * 16 14 12 19 19 H 1.48496 * 109.47098 * 240.00015 * 16 14 12 20 20 C 1.47603 * 122.70826 * 90.73295 * 11 10 9 21 21 C 1.53948 * 112.14345 * 317.86156 * 20 11 10 22 22 C 1.52999 * 109.36324 * 79.63019 * 21 20 11 23 23 C 1.52999 * 109.36788 * 199.37460 * 21 20 11 24 24 C 1.51036 * 109.97067 * 319.42369 * 21 20 11 25 25 C 1.50706 * 109.46900 * 239.99600 * 2 1 3 26 26 C 1.38589 * 120.80054 * 299.72332 * 25 2 1 27 27 N 1.32337 * 119.10256 * 179.71506 * 26 25 2 28 28 C 1.31798 * 120.81653 * 0.56986 * 27 26 25 29 29 N 1.31796 * 121.75310 * 359.70658 * 28 27 26 30 30 C 1.32333 * 120.81960 * 359.97438 * 29 28 27 31 31 H 1.09003 * 109.46918 * 299.99993 * 1 2 3 32 32 H 1.09001 * 109.47025 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47061 * 59.99579 * 1 2 3 34 34 H 0.97003 * 120.00577 * 0.02562 * 6 4 2 35 35 H 1.09000 * 109.32323 * 304.31862 * 9 7 6 36 36 H 1.09001 * 109.32574 * 63.96471 * 9 7 6 37 37 H 1.09002 * 109.45208 * 48.77481 * 10 9 7 38 38 H 1.09005 * 109.45016 * 168.72142 * 10 9 7 39 39 H 0.96992 * 120.00470 * 179.97438 * 15 14 12 40 40 H 1.08997 * 108.94887 * 78.55435 * 20 11 10 41 41 H 1.09007 * 108.94509 * 197.18197 * 20 11 10 42 42 H 1.09008 * 109.47163 * 60.13732 * 22 21 20 43 43 H 1.09004 * 109.46912 * 180.13307 * 22 21 20 44 44 H 1.08996 * 109.47436 * 300.13812 * 22 21 20 45 45 H 1.08996 * 109.47435 * 60.00300 * 23 21 20 46 46 H 1.08997 * 109.46939 * 180.02562 * 23 21 20 47 47 H 1.09002 * 109.47284 * 300.00082 * 23 21 20 48 48 H 1.08993 * 109.63792 * 332.05811 * 24 21 20 49 49 H 1.08996 * 109.42196 * 211.93999 * 24 21 20 50 50 H 1.07995 * 120.45367 * 359.97438 * 26 25 2 51 51 H 1.08003 * 119.12351 * 179.72317 * 28 27 26 52 52 H 1.07999 * 120.44461 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4545 7 6 2.1946 -0.9409 3.6507 8 1 2.2243 -2.0105 3.4433 9 6 3.5638 -0.4813 3.9299 10 6 4.1590 -1.2607 5.1283 11 7 3.5095 -0.8416 6.3501 12 6 4.0349 0.2160 7.0434 13 1 4.5504 1.0049 6.5160 14 6 3.9051 0.2739 8.4242 15 7 3.4735 -0.7767 9.0894 16 14 4.3431 1.8429 9.3386 17 1 4.7993 2.8703 8.3683 18 1 3.1476 2.3435 10.0635 19 1 5.4299 1.5623 10.3107 20 6 2.3037 -1.5069 6.8812 21 6 1.2877 -1.8377 5.7729 22 6 1.7283 -3.1086 5.0437 23 6 -0.0901 -2.0635 6.3985 24 6 1.2081 -0.6951 4.7883 25 6 2.0323 -0.7105 -1.2305 26 6 1.7123 -2.0387 -1.4633 27 7 2.1668 -2.6280 -2.5576 28 6 2.9234 -1.9710 -3.4137 29 7 3.2524 -0.7092 -3.2223 30 6 2.8297 -0.0529 -2.1538 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 -0.8899 34 1 1.1489 0.5386 2.5436 35 1 4.1854 -0.6437 3.0493 36 1 3.5458 0.5824 4.1675 37 1 4.0007 -2.3291 4.9811 38 1 5.2278 -1.0584 5.1981 39 1 3.3832 -0.7364 10.0543 40 1 2.5991 -2.4310 7.3779 41 1 1.8298 -0.8505 7.6112 42 1 1.7745 -3.9362 5.7517 43 1 1.0113 -3.3431 4.2569 44 1 2.7129 -2.9519 4.6032 45 1 -0.4037 -1.1606 6.9223 46 1 -0.8107 -2.2983 5.6152 47 1 -0.0374 -2.8930 7.1038 48 1 1.4578 0.2393 5.2907 49 1 0.1971 -0.6333 4.3859 50 1 1.0969 -2.5843 -0.7633 51 1 3.2831 -2.4800 -4.2957 52 1 3.1027 0.9812 -2.0032 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089466675.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:37 Heat of formation + Delta-G solvation = 39.536908 kcal Electronic energy + Delta-G solvation = -31961.418763 eV Core-core repulsion = 27962.005094 eV Total energy + Delta-G solvation = -3999.413669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.41224 -40.20382 -38.64101 -35.13143 -34.81658 -34.24357 -33.87169 -32.11134 -30.70489 -29.63348 -27.48634 -26.89538 -25.63331 -25.46770 -24.73463 -24.21937 -23.34294 -21.71085 -20.19227 -19.67650 -18.23400 -17.89065 -17.75339 -16.73427 -16.69391 -16.27742 -15.36430 -15.17485 -14.86990 -14.79646 -14.21607 -14.00873 -13.88049 -13.81070 -13.77083 -13.53193 -13.02123 -12.87783 -12.69283 -12.63002 -12.61330 -12.32991 -11.93346 -11.77976 -11.52574 -11.45304 -11.12057 -11.02453 -10.98794 -10.83680 -10.75403 -10.43639 -10.34447 -10.27114 -10.03479 -9.86787 -9.74928 -9.52730 -9.46309 -9.38129 -9.28837 -8.79747 -8.42689 -6.60391 -5.78840 -3.27527 0.66082 0.90768 2.63846 3.19356 3.33638 3.42207 3.43477 3.63674 3.91304 4.02221 4.20373 4.38411 4.42333 4.47352 4.70919 4.83729 5.03833 5.12065 5.22234 5.28250 5.31987 5.36669 5.38073 5.49687 5.58202 5.62423 5.67064 5.75407 5.85347 5.90983 6.05433 6.16525 6.20342 6.22393 6.23937 6.30763 6.33810 6.39815 6.60149 6.63358 6.73338 6.74808 6.76787 6.85471 6.89183 6.97348 7.14943 7.43483 7.60943 7.73840 7.81695 7.86821 8.27646 8.48917 9.24726 9.89814 10.36921 11.27765 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017672 B = 0.002668 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.012683 B =10490.657770 C =11061.110940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 H 0.109 0.891 4 C 0.514 3.486 5 O -0.537 6.537 6 N -0.722 5.722 7 C 0.142 3.858 8 H 0.096 0.904 9 C -0.154 4.154 10 C 0.154 3.846 11 N -0.588 5.588 12 C -0.258 4.258 13 H 0.063 0.937 14 C 0.008 3.992 15 N -0.903 5.903 16 Si 0.899 3.101 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.290 1.290 20 C 0.192 3.808 21 C -0.089 4.089 22 C -0.154 4.154 23 C -0.130 4.130 24 C -0.100 4.100 25 C -0.168 4.168 26 C 0.182 3.818 27 N -0.520 5.520 28 C 0.287 3.713 29 N -0.522 5.522 30 C 0.153 3.847 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.394 0.606 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.252 0.748 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.052 0.948 48 H 0.078 0.922 49 H 0.051 0.949 50 H 0.163 0.837 51 H 0.194 0.806 52 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.031 1.383 -18.364 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 H 0.127 0.873 4 C 0.298 3.702 5 O -0.414 6.414 6 N -0.371 5.371 7 C 0.040 3.960 8 H 0.113 0.887 9 C -0.195 4.195 10 C 0.025 3.975 11 N -0.309 5.309 12 C -0.388 4.388 13 H 0.080 0.920 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.730 3.270 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.217 1.217 20 C 0.067 3.933 21 C -0.091 4.091 22 C -0.210 4.210 23 C -0.188 4.188 24 C -0.138 4.138 25 C -0.173 4.173 26 C 0.016 3.984 27 N -0.233 5.233 28 C 0.000 4.000 29 N -0.235 5.235 30 C -0.013 4.013 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.228 0.772 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.097 0.903 49 H 0.069 0.931 50 H 0.180 0.820 51 H 0.211 0.789 52 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.210 0.139 -19.060 20.753 hybrid contribution -0.284 1.757 1.421 2.277 sum -8.494 1.895 -17.639 19.669 Atomic orbital electron populations 1.21809 0.91585 1.03288 1.03251 1.20193 0.97917 1.00411 0.90315 0.87266 1.20254 0.80611 0.84810 0.84493 1.90732 1.37671 1.26347 1.86612 1.46493 1.52939 1.31762 1.05953 1.20414 0.94171 0.98549 0.82871 0.88674 1.21864 0.95477 1.02077 1.00128 1.20798 0.95365 0.95464 0.85865 1.43605 1.26991 1.36679 1.23591 1.19204 1.32661 0.98417 0.88505 0.91966 1.25141 1.00361 0.96888 0.96733 1.70029 1.50544 1.27413 1.06730 0.86270 0.77712 0.83221 0.79833 1.20332 1.21667 1.21706 1.21079 0.84512 0.97006 0.90710 1.20955 0.96839 0.94001 0.97322 1.22375 1.01671 0.97469 0.99533 1.21787 0.95683 1.01480 0.99864 1.21313 0.96523 1.00826 0.95137 1.21121 1.01229 0.97109 0.97823 1.22984 0.92585 0.90827 0.91970 1.68462 1.11626 1.39298 1.03960 1.24969 0.90257 0.87545 0.97265 1.68423 1.22861 1.10525 1.21725 1.23103 0.89881 1.00090 0.88207 0.91019 0.91708 0.91251 0.77231 0.93057 0.92172 0.93815 0.93500 0.93731 0.95516 0.90865 0.93239 0.94077 0.90719 0.92865 0.93866 0.92879 0.90320 0.93060 0.81972 0.78896 0.81685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.91 37.16 0.33 -0.54 16 2 C -0.07 -0.55 2.93 -92.92 -0.27 -0.82 16 3 H 0.11 0.68 7.95 -51.93 -0.41 0.27 16 4 C 0.51 6.30 6.82 -10.98 -0.07 6.23 16 5 O -0.54 -8.82 14.45 5.56 0.08 -8.74 16 6 N -0.72 -8.62 4.81 -56.81 -0.27 -8.89 16 7 C 0.14 2.17 1.77 -70.98 -0.13 2.05 16 8 H 0.10 1.60 4.02 -51.93 -0.21 1.39 16 9 C -0.15 -2.72 5.18 -28.58 -0.15 -2.87 16 10 C 0.15 3.16 5.58 -4.09 -0.02 3.13 16 11 N -0.59 -13.73 2.25 -172.09 -0.39 -14.12 16 12 C -0.26 -6.72 9.41 -15.06 -0.14 -6.86 16 13 H 0.06 1.63 7.85 -52.49 -0.41 1.21 16 14 C 0.01 0.20 4.97 -17.43 -0.09 0.12 16 15 N -0.90 -25.26 11.00 55.49 0.61 -24.65 16 16 Si 0.90 21.11 29.57 -169.99 -5.03 16.09 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.19 4.27 3.53 -2.94 -0.01 4.26 16 21 C -0.09 -1.53 0.75 -155.00 -0.12 -1.64 16 22 C -0.15 -2.51 6.76 37.16 0.25 -2.26 16 23 C -0.13 -1.98 8.15 37.16 0.30 -1.68 16 24 C -0.10 -1.56 4.38 -27.94 -0.12 -1.68 16 25 C -0.17 -1.69 4.40 -104.36 -0.46 -2.15 16 26 C 0.18 2.08 9.26 -17.20 -0.16 1.92 16 27 N -0.52 -6.27 10.44 -14.58 -0.15 -6.42 16 28 C 0.29 3.06 12.29 -92.15 -1.13 1.93 16 29 N -0.52 -5.79 10.44 -14.58 -0.15 -5.95 16 30 C 0.15 1.49 10.96 -17.20 -0.19 1.30 16 31 H 0.07 0.37 7.56 -51.93 -0.39 -0.03 16 32 H 0.06 0.44 7.50 -51.93 -0.39 0.05 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.39 3.66 8.00 -40.82 -0.33 3.33 16 35 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.04 0.88 5.22 -51.93 -0.27 0.61 16 38 H 0.05 1.01 7.99 -51.93 -0.41 0.59 16 39 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 41 H 0.07 1.83 6.31 -51.92 -0.33 1.51 16 42 H 0.05 0.80 8.13 -51.92 -0.42 0.38 16 43 H 0.04 0.60 7.90 -51.93 -0.41 0.19 16 44 H 0.07 1.31 3.16 -51.93 -0.16 1.14 16 45 H 0.05 0.82 8.12 -51.93 -0.42 0.39 16 46 H 0.04 0.56 8.08 -51.93 -0.42 0.15 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.08 1.42 7.48 -51.93 -0.39 1.03 16 49 H 0.05 0.68 7.63 -51.93 -0.40 0.29 16 50 H 0.16 1.74 7.65 -52.49 -0.40 1.34 16 51 H 0.19 1.41 8.06 -52.48 -0.42 0.99 16 52 H 0.17 1.12 8.01 -52.49 -0.42 0.70 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -31.64 395.18 -9.75 -41.39 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.23 Total: 4.90 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.18 Total: 0.44 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.36 Total: -60.03 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.64 -9.75 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089466675.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.926 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds