Wall clock time and date at job start Wed Apr 1 2020 04:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47492 * 2 1 4 4 C 1.50707 * 109.47121 * 120.00251 * 2 1 3 5 5 O 1.21280 * 119.99943 * 120.00158 * 4 2 1 6 6 N 1.34772 * 119.99587 * 299.99404 * 4 2 1 7 7 C 1.46504 * 119.99938 * 179.97438 * 6 4 2 8 8 H 1.08993 * 108.44953 * 325.00549 * 7 6 4 9 9 C 1.47098 * 108.51203 * 82.69277 * 7 6 4 10 10 C 1.54859 * 110.32162 * 184.05824 * 9 7 6 11 11 N 1.44576 * 109.59859 * 288.72863 * 10 9 7 12 12 C 1.36934 * 118.64506 * 270.70852 * 11 10 9 13 13 H 1.07996 * 120.00497 * 30.46946 * 12 11 10 14 14 C 1.38815 * 119.99711 * 210.47277 * 12 11 10 15 15 N 1.31621 * 120.00525 * 10.92007 * 14 12 11 16 16 Si 1.86803 * 119.99911 * 190.91581 * 14 12 11 17 17 H 1.48499 * 109.47246 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47024 * 120.00269 * 16 14 12 19 19 H 1.48496 * 109.47098 * 240.00015 * 16 14 12 20 20 C 1.47603 * 122.70826 * 90.73295 * 11 10 9 21 21 C 1.53948 * 112.14345 * 317.86156 * 20 11 10 22 22 C 1.52999 * 109.36324 * 79.63019 * 21 20 11 23 23 C 1.52999 * 109.36788 * 199.37460 * 21 20 11 24 24 C 1.51036 * 109.97067 * 319.42369 * 21 20 11 25 25 C 1.50706 * 109.46900 * 239.99600 * 2 1 3 26 26 C 1.38589 * 120.80054 * 299.72332 * 25 2 1 27 27 N 1.32337 * 119.10256 * 179.71506 * 26 25 2 28 28 C 1.31798 * 120.81653 * 0.56986 * 27 26 25 29 29 N 1.31796 * 121.75310 * 359.70658 * 28 27 26 30 30 C 1.32333 * 120.81960 * 359.97438 * 29 28 27 31 31 H 1.09003 * 109.46918 * 299.99993 * 1 2 3 32 32 H 1.09001 * 109.47025 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47061 * 59.99579 * 1 2 3 34 34 H 0.97003 * 120.00577 * 0.02562 * 6 4 2 35 35 H 1.09000 * 109.32323 * 304.31862 * 9 7 6 36 36 H 1.09001 * 109.32574 * 63.96471 * 9 7 6 37 37 H 1.09002 * 109.45208 * 48.77481 * 10 9 7 38 38 H 1.09005 * 109.45016 * 168.72142 * 10 9 7 39 39 H 0.96992 * 120.00470 * 179.97438 * 15 14 12 40 40 H 1.08997 * 108.94887 * 78.55435 * 20 11 10 41 41 H 1.09007 * 108.94509 * 197.18197 * 20 11 10 42 42 H 1.09008 * 109.47163 * 60.13732 * 22 21 20 43 43 H 1.09004 * 109.46912 * 180.13307 * 22 21 20 44 44 H 1.08996 * 109.47436 * 300.13812 * 22 21 20 45 45 H 1.08996 * 109.47435 * 60.00300 * 23 21 20 46 46 H 1.08997 * 109.46939 * 180.02562 * 23 21 20 47 47 H 1.09002 * 109.47284 * 300.00082 * 23 21 20 48 48 H 1.08993 * 109.63792 * 332.05811 * 24 21 20 49 49 H 1.08996 * 109.42196 * 211.93999 * 24 21 20 50 50 H 1.07995 * 120.45367 * 359.97438 * 26 25 2 51 51 H 1.08003 * 119.12351 * 179.72317 * 28 27 26 52 52 H 1.07999 * 120.44461 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4545 7 6 2.1946 -0.9409 3.6507 8 1 2.2243 -2.0105 3.4433 9 6 3.5638 -0.4813 3.9299 10 6 4.1590 -1.2607 5.1283 11 7 3.5095 -0.8416 6.3501 12 6 4.0349 0.2160 7.0434 13 1 4.5504 1.0049 6.5160 14 6 3.9051 0.2739 8.4242 15 7 3.4735 -0.7767 9.0894 16 14 4.3431 1.8429 9.3386 17 1 4.7993 2.8703 8.3683 18 1 3.1476 2.3435 10.0635 19 1 5.4299 1.5623 10.3107 20 6 2.3037 -1.5069 6.8812 21 6 1.2877 -1.8377 5.7729 22 6 1.7283 -3.1086 5.0437 23 6 -0.0901 -2.0635 6.3985 24 6 1.2081 -0.6951 4.7883 25 6 2.0323 -0.7105 -1.2305 26 6 1.7123 -2.0387 -1.4633 27 7 2.1668 -2.6280 -2.5576 28 6 2.9234 -1.9710 -3.4137 29 7 3.2524 -0.7092 -3.2223 30 6 2.8297 -0.0529 -2.1538 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 -0.8899 34 1 1.1489 0.5386 2.5436 35 1 4.1854 -0.6437 3.0493 36 1 3.5458 0.5824 4.1675 37 1 4.0007 -2.3291 4.9811 38 1 5.2278 -1.0584 5.1981 39 1 3.3832 -0.7364 10.0543 40 1 2.5991 -2.4310 7.3779 41 1 1.8298 -0.8505 7.6112 42 1 1.7745 -3.9362 5.7517 43 1 1.0113 -3.3431 4.2569 44 1 2.7129 -2.9519 4.6032 45 1 -0.4037 -1.1606 6.9223 46 1 -0.8107 -2.2983 5.6152 47 1 -0.0374 -2.8930 7.1038 48 1 1.4578 0.2393 5.2907 49 1 0.1971 -0.6333 4.3859 50 1 1.0969 -2.5843 -0.7633 51 1 3.2831 -2.4800 -4.2957 52 1 3.1027 0.9812 -2.0032 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089466675.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:35 Heat of formation + Delta-G solvation = 20.803677 kcal Electronic energy + Delta-G solvation = -31962.231097 eV Core-core repulsion = 27962.005094 eV Total energy + Delta-G solvation = -4000.226003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.21630 -41.37128 -39.89693 -36.42487 -35.83041 -35.70450 -34.65978 -33.74357 -31.99972 -30.70663 -28.86842 -28.20968 -27.34624 -26.30375 -25.78459 -25.47243 -24.44196 -23.08515 -21.30248 -21.11405 -19.45773 -18.79556 -18.57710 -18.50131 -17.68518 -17.50948 -16.92112 -16.16479 -16.00908 -15.94287 -15.61161 -15.30276 -15.05448 -14.92457 -14.61035 -14.53463 -14.50140 -14.19234 -14.07069 -13.85224 -13.47910 -13.32499 -13.18258 -12.97621 -12.94884 -12.86114 -12.63573 -12.54047 -12.25271 -12.13218 -11.98838 -11.81331 -11.76390 -11.73670 -11.59887 -11.48523 -11.08162 -10.78680 -10.74604 -10.46223 -10.33085 -10.19831 -9.94706 -8.55830 -7.81830 -5.33359 -0.09598 0.12896 1.45338 1.48081 1.57314 1.70529 2.24120 2.52266 2.84512 3.23227 3.29367 3.31696 3.51342 3.66169 3.69394 3.71654 3.80530 4.02714 4.07459 4.16689 4.20222 4.24535 4.43991 4.45339 4.46876 4.56433 4.74935 4.76247 4.78810 4.84415 4.85981 4.87845 4.88583 5.00859 5.03450 5.06323 5.15859 5.21858 5.27171 5.29614 5.31788 5.43658 5.44509 5.53724 5.58000 5.65480 5.69790 5.76397 5.90725 5.97410 6.45850 6.67531 7.09572 7.23302 7.34993 7.98146 8.38582 9.22002 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017672 B = 0.002668 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.012683 B =10490.657770 C =11061.110940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 H 0.140 0.860 4 C 0.513 3.487 5 O -0.581 6.581 6 N -0.711 5.711 7 C 0.150 3.850 8 H 0.086 0.914 9 C -0.134 4.134 10 C 0.149 3.851 11 N -0.598 5.598 12 C -0.261 4.261 13 H 0.060 0.940 14 C -0.044 4.044 15 N -0.933 5.933 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.296 1.296 20 C 0.206 3.794 21 C -0.083 4.083 22 C -0.146 4.146 23 C -0.126 4.126 24 C -0.090 4.090 25 C -0.171 4.171 26 C 0.166 3.834 27 N -0.544 5.544 28 C 0.278 3.722 29 N -0.538 5.538 30 C 0.149 3.851 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.411 0.589 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.029 0.971 39 H 0.248 0.752 40 H -0.012 1.012 41 H 0.041 0.959 42 H 0.043 0.957 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.046 0.954 48 H 0.055 0.945 49 H 0.086 0.914 50 H 0.162 0.838 51 H 0.218 0.782 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 3.106 -20.347 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 H 0.157 0.843 4 C 0.300 3.700 5 O -0.460 6.460 6 N -0.362 5.362 7 C 0.046 3.954 8 H 0.104 0.896 9 C -0.175 4.175 10 C 0.022 3.978 11 N -0.320 5.320 12 C -0.392 4.392 13 H 0.078 0.922 14 C -0.240 4.240 15 N -0.579 5.579 16 Si 0.790 3.210 17 H -0.192 1.192 18 H -0.216 1.216 19 H -0.224 1.224 20 C 0.081 3.919 21 C -0.085 4.085 22 C -0.203 4.203 23 C -0.184 4.184 24 C -0.128 4.128 25 C -0.175 4.175 26 C 0.001 3.999 27 N -0.258 5.258 28 C -0.009 4.009 29 N -0.251 5.251 30 C -0.016 4.016 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.248 0.752 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.006 0.994 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.105 0.895 50 H 0.179 0.821 51 H 0.234 0.766 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.902 1.891 -21.080 23.366 hybrid contribution 0.313 1.169 2.004 2.341 sum -9.589 3.060 -19.076 21.569 Atomic orbital electron populations 1.21841 0.89570 1.03345 1.04883 1.20214 0.99364 1.00874 0.87122 0.84255 1.20926 0.79530 0.84184 0.85330 1.90727 1.39656 1.28430 1.87230 1.46230 1.52928 1.32116 1.04895 1.20038 0.92855 0.98288 0.84206 0.89608 1.21589 0.96953 1.00763 0.98176 1.20896 0.94538 0.96271 0.86106 1.43764 1.27805 1.36285 1.24130 1.19450 1.31939 0.98902 0.88864 0.92205 1.25820 1.01068 0.99535 0.97534 1.70198 1.52096 1.29161 1.06477 0.85300 0.77017 0.80206 0.78475 1.19215 1.21595 1.22371 1.20824 0.85054 0.94108 0.91940 1.20828 0.96321 0.95193 0.96147 1.22272 1.01500 0.96700 0.99797 1.21754 0.94865 1.01146 1.00610 1.21191 0.98424 0.98671 0.94496 1.21280 1.01077 0.96641 0.98500 1.23124 0.93019 0.91777 0.92025 1.68461 1.12555 1.40090 1.04667 1.25478 0.89892 0.87746 0.97771 1.68488 1.23355 1.10763 1.22500 1.23655 0.89042 1.01340 0.87599 0.89334 0.92503 0.89681 0.75189 0.93234 0.93065 0.93431 0.95218 0.94301 0.99384 0.94080 0.93789 0.91627 0.92173 0.93257 0.90609 0.93516 0.92625 0.89544 0.82125 0.76592 0.78693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.91 71.98 0.64 -0.53 16 2 C -0.05 -0.70 2.93 -12.28 -0.04 -0.74 16 3 H 0.14 1.05 7.95 -2.39 -0.02 1.04 16 4 C 0.51 11.26 6.82 87.66 0.60 11.86 16 5 O -0.58 -18.32 14.45 -3.03 -0.04 -18.36 16 6 N -0.71 -14.81 4.81 -452.04 -2.17 -16.98 16 7 C 0.15 4.32 1.77 43.01 0.08 4.40 16 8 H 0.09 2.74 4.02 -2.39 -0.01 2.73 16 9 C -0.13 -4.64 5.18 29.39 0.15 -4.49 16 10 C 0.15 6.28 5.58 87.37 0.49 6.77 16 11 N -0.60 -28.74 2.25 -698.38 -1.57 -30.32 16 12 C -0.26 -13.90 9.41 84.03 0.79 -13.11 16 13 H 0.06 3.16 7.85 -2.91 -0.02 3.14 16 14 C -0.04 -2.40 4.97 84.86 0.42 -1.98 16 15 N -0.93 -54.12 11.00 21.65 0.24 -53.88 16 16 Si 0.96 44.12 29.57 68.60 2.03 46.14 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 20 C 0.21 9.46 3.53 86.49 0.31 9.76 16 21 C -0.08 -2.78 0.75 -52.50 -0.04 -2.82 16 22 C -0.15 -4.62 6.76 71.98 0.49 -4.13 16 23 C -0.13 -3.61 8.15 71.98 0.59 -3.02 16 24 C -0.09 -2.62 4.38 29.81 0.13 -2.49 16 25 C -0.17 -3.04 4.40 -19.69 -0.09 -3.13 16 26 C 0.17 3.62 9.26 84.70 0.78 4.40 16 27 N -0.54 -12.78 10.44 -200.05 -2.09 -14.87 16 28 C 0.28 5.64 12.29 180.88 2.22 7.87 16 29 N -0.54 -11.04 10.44 -200.04 -2.09 -13.13 16 30 C 0.15 2.54 10.96 84.70 0.93 3.47 16 31 H 0.09 0.47 7.56 -2.39 -0.02 0.46 16 32 H 0.06 0.60 7.50 -2.39 -0.02 0.58 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.41 5.93 8.00 -92.71 -0.74 5.19 16 35 H 0.05 1.74 7.67 -2.39 -0.02 1.72 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.97 5.22 -2.39 -0.01 1.95 16 38 H 0.03 1.31 7.99 -2.38 -0.02 1.30 16 39 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 40 H -0.01 -0.63 7.83 -2.39 -0.02 -0.65 16 41 H 0.04 2.13 6.31 -2.38 -0.02 2.12 16 42 H 0.04 1.42 8.13 -2.38 -0.02 1.40 16 43 H 0.06 1.76 7.90 -2.38 -0.02 1.74 16 44 H 0.06 2.09 3.16 -2.39 -0.01 2.08 16 45 H 0.05 1.44 8.12 -2.39 -0.02 1.43 16 46 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 47 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.05 1.92 7.48 -2.39 -0.02 1.91 16 49 H 0.09 1.94 7.63 -2.39 -0.02 1.93 16 50 H 0.16 3.37 7.65 -2.91 -0.02 3.35 16 51 H 0.22 2.94 8.06 -2.91 -0.02 2.91 16 52 H 0.20 1.93 8.01 -2.91 -0.02 1.91 16 Total: -1.00 -71.97 395.18 2.94 -69.03 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.19 Total: 20.27 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 8.45 Total: 12.10 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -7.69 Total: -129.18 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.04 Total: -18.36 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -71.97 2.94 -69.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089466675.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.837 kcal (2) G-P(sol) polarization free energy of solvation -71.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds