Wall clock time and date at job start Wed Apr 1 2020 04:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47127 * 2 1 4 4 C 1.50692 * 109.47083 * 239.99642 * 2 1 3 5 5 O 1.21287 * 120.00013 * 239.99662 * 4 2 1 6 6 N 1.34774 * 120.00337 * 60.00251 * 4 2 1 7 7 C 1.46498 * 120.00252 * 179.97438 * 6 4 2 8 8 H 1.08999 * 109.49395 * 324.99899 * 7 6 4 9 9 C 1.50881 * 109.48986 * 85.04692 * 7 6 4 10 10 C 1.53938 * 110.07133 * 211.84623 * 9 7 6 11 11 N 1.47605 * 112.17476 * 319.44548 * 10 9 7 12 12 C 1.36941 * 118.64483 * 137.86290 * 11 10 9 13 13 H 1.08004 * 119.99531 * 205.55068 * 12 11 10 14 14 C 1.38808 * 119.99996 * 25.55460 * 12 11 10 15 15 N 1.31621 * 119.99870 * 17.88722 * 14 12 11 16 16 Si 1.86795 * 120.00070 * 197.88660 * 14 12 11 17 17 H 1.48498 * 109.47259 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47278 * 120.00363 * 16 14 12 19 19 H 1.48504 * 109.47119 * 240.00308 * 16 14 12 20 20 C 1.44582 * 122.71257 * 317.88659 * 11 10 9 21 21 C 1.54860 * 109.59919 * 90.70378 * 20 11 10 22 22 C 1.53001 * 109.33045 * 168.47564 * 21 20 11 23 23 C 1.52993 * 109.33263 * 48.99328 * 21 20 11 24 24 C 1.47098 * 110.32217 * 288.72950 * 21 20 11 25 25 C 1.50700 * 109.46648 * 119.99603 * 2 1 3 26 26 C 1.38594 * 120.80311 * 59.72719 * 25 2 1 27 27 N 1.32337 * 119.10743 * 179.71409 * 26 25 2 28 28 C 1.31791 * 120.81503 * 0.56777 * 27 26 25 29 29 N 1.31796 * 121.75847 * 359.70050 * 28 27 26 30 30 C 1.32341 * 120.81604 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.46674 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47212 * 299.99936 * 1 2 3 33 33 H 1.08991 * 109.46892 * 60.00436 * 1 2 3 34 34 H 0.97001 * 119.99568 * 359.97438 * 6 4 2 35 35 H 1.08999 * 109.36828 * 332.06203 * 9 7 6 36 36 H 1.09006 * 109.36940 * 91.68176 * 9 7 6 37 37 H 1.08999 * 108.94000 * 198.74820 * 10 9 7 38 38 H 1.09006 * 108.86146 * 80.08869 * 10 9 7 39 39 H 0.97000 * 120.00069 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.45100 * 330.66365 * 20 11 10 41 41 H 1.08996 * 109.45016 * 210.74184 * 20 11 10 42 42 H 1.09000 * 109.47418 * 180.86603 * 22 21 20 43 43 H 1.09002 * 109.47137 * 300.86754 * 22 21 20 44 44 H 1.08998 * 109.47159 * 60.86358 * 22 21 20 45 45 H 1.09002 * 109.47229 * 299.13572 * 23 21 20 46 46 H 1.09002 * 109.47178 * 59.13693 * 23 21 20 47 47 H 1.09001 * 109.47211 * 179.12990 * 23 21 20 48 48 H 1.08996 * 108.51798 * 301.55606 * 24 21 20 49 49 H 1.08997 * 108.51867 * 184.05593 * 24 21 20 50 50 H 1.08005 * 120.44456 * 359.97438 * 26 25 2 51 51 H 1.07998 * 119.12684 * 179.72829 * 28 27 26 52 52 H 1.07999 * 120.44779 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1190 6 7 1.7069 -0.2501 -2.4545 7 6 2.1956 -0.9405 -3.6506 8 1 3.1950 -1.3324 -3.4615 9 6 1.2648 -2.0781 -3.9909 10 6 2.0539 -3.2312 -4.6369 11 7 3.0767 -2.7447 -5.5835 12 6 4.3119 -3.3359 -5.5764 13 1 5.1759 -2.7854 -5.9185 14 6 4.4535 -4.6424 -5.1296 15 7 3.4004 -5.4278 -5.0482 16 14 6.1384 -5.2861 -4.6440 17 1 7.1493 -4.2137 -4.8261 18 1 6.1155 -5.7090 -3.2207 19 1 6.4901 -6.4476 -5.4999 20 6 2.8284 -1.6694 -6.5176 21 6 3.2136 -0.3175 -5.8679 22 6 3.2246 0.7745 -6.9394 23 6 4.6093 -0.4313 -5.2516 24 6 2.2458 0.0394 -4.8191 25 6 2.0323 -0.7103 1.2305 26 6 1.7030 -2.0353 1.4693 27 7 2.1671 -2.6279 2.5577 28 6 2.9236 -1.9708 3.4138 29 7 3.2526 -0.7089 3.2224 30 6 2.8298 -0.0526 2.1539 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.1489 0.5384 -2.5435 35 1 0.7822 -2.4348 -3.0810 36 1 0.5037 -1.7264 -4.6875 37 1 1.3592 -3.8806 -5.1696 38 1 2.5440 -3.8064 -3.8513 39 1 3.4993 -6.3410 -4.7363 40 1 1.7713 -1.6563 -6.7833 41 1 3.4261 -1.8237 -7.4159 42 1 3.5104 1.7243 -6.4874 43 1 3.9410 0.5124 -7.7180 44 1 2.2301 0.8648 -7.3764 45 1 4.6048 -1.2030 -4.4818 46 1 5.3284 -0.6956 -6.0269 47 1 4.8891 0.5238 -4.8070 48 1 1.2539 0.0942 -5.2675 49 1 2.5022 1.0258 -4.4327 50 1 1.0795 -2.5780 0.7742 51 1 3.2839 -2.4799 4.2954 52 1 3.1033 0.9812 2.0028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089466678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:48 Heat of formation + Delta-G solvation = 30.032119 kcal Electronic energy + Delta-G solvation = -32404.229327 eV Core-core repulsion = 28404.403500 eV Total energy + Delta-G solvation = -3999.825828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.28591 -39.96649 -38.57222 -35.02773 -34.71468 -34.37615 -33.75310 -31.61191 -30.71560 -29.81914 -27.46285 -26.70490 -25.58119 -25.44059 -24.61934 -24.05941 -23.14148 -21.77716 -20.09089 -19.54335 -18.19563 -17.80286 -17.71460 -16.71491 -16.59790 -16.17062 -15.08182 -15.03185 -14.73517 -14.68881 -14.33160 -13.87913 -13.78134 -13.72392 -13.65826 -13.64303 -13.27246 -12.90111 -12.75118 -12.58118 -12.27173 -12.04519 -11.82711 -11.57520 -11.35181 -11.26603 -11.06501 -10.98727 -10.91332 -10.86823 -10.74185 -10.57502 -10.26117 -10.12229 -9.88131 -9.72280 -9.68193 -9.58294 -9.48365 -9.37853 -9.27198 -8.74378 -8.29879 -6.61302 -5.71876 -3.13140 0.77560 1.02735 2.77693 3.28130 3.43860 3.52865 3.53277 3.75166 4.02136 4.13886 4.30484 4.49449 4.51064 4.57315 4.79905 4.93203 5.07952 5.13719 5.21346 5.29675 5.40809 5.44067 5.45547 5.51797 5.55739 5.69556 5.71089 5.85466 5.93837 5.98642 6.11532 6.16240 6.22422 6.24608 6.28698 6.33714 6.38446 6.48312 6.59140 6.63801 6.75612 6.81233 6.85288 6.86280 6.93751 7.08801 7.32339 7.46547 7.71158 7.76167 7.91983 7.98878 8.42703 8.53422 9.30298 9.97896 10.41569 11.35873 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010066 B = 0.003868 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.074318 B = 7237.372624 C = 8847.459548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 H 0.108 0.892 4 C 0.510 3.490 5 O -0.520 6.520 6 N -0.724 5.724 7 C 0.149 3.851 8 H 0.110 0.890 9 C -0.146 4.146 10 C 0.182 3.818 11 N -0.587 5.587 12 C -0.258 4.258 13 H 0.070 0.930 14 C 0.008 3.992 15 N -0.900 5.900 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.292 1.292 20 C 0.169 3.831 21 C -0.093 4.093 22 C -0.133 4.133 23 C -0.130 4.130 24 C -0.096 4.096 25 C -0.169 4.169 26 C 0.184 3.816 27 N -0.518 5.518 28 C 0.288 3.712 29 N -0.524 5.524 30 C 0.151 3.849 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.391 0.609 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.025 0.975 38 H 0.077 0.923 39 H 0.252 0.748 40 H 0.031 0.969 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.046 0.954 47 H 0.025 0.975 48 H 0.053 0.947 49 H 0.048 0.952 50 H 0.164 0.836 51 H 0.194 0.806 52 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 16.016 8.812 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 H 0.126 0.874 4 C 0.294 3.706 5 O -0.395 6.395 6 N -0.374 5.374 7 C 0.046 3.954 8 H 0.127 0.873 9 C -0.186 4.186 10 C 0.056 3.944 11 N -0.307 5.307 12 C -0.387 4.387 13 H 0.088 0.912 14 C -0.191 4.191 15 N -0.545 5.545 16 Si 0.723 3.277 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.219 1.219 20 C 0.040 3.960 21 C -0.096 4.096 22 C -0.191 4.191 23 C -0.187 4.187 24 C -0.134 4.134 25 C -0.174 4.174 26 C 0.018 3.982 27 N -0.231 5.231 28 C 0.000 4.000 29 N -0.237 5.237 30 C -0.014 4.014 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.224 0.776 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.181 0.819 51 H 0.211 0.789 52 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.120 14.604 9.755 18.951 hybrid contribution 0.303 0.452 -0.553 0.776 sum -6.817 15.056 9.203 18.917 Atomic orbital electron populations 1.21808 0.91653 1.03408 1.03036 1.20173 0.97854 1.00222 0.90404 0.87440 1.20259 0.80896 0.85070 0.84377 1.90828 1.36761 1.25539 1.86354 1.46282 1.53344 1.31778 1.06000 1.20662 1.00669 0.91757 0.82305 0.87265 1.22430 0.98276 0.98017 0.99852 1.20934 0.90086 0.90631 0.92706 1.43645 1.12020 1.37584 1.37466 1.19287 0.85372 0.93937 1.40130 0.91227 1.24960 0.96602 0.95696 1.01837 1.70078 1.28317 1.06213 1.49860 0.86379 0.84540 0.78605 0.78210 1.20294 1.21586 1.21892 1.20710 0.97181 0.86302 0.91810 1.20457 0.95876 0.98254 0.95035 1.21806 1.00936 0.97680 0.98703 1.21921 0.95226 1.00076 1.01510 1.20591 0.99696 0.97552 0.95531 1.21110 1.01340 0.97168 0.97742 1.23032 0.92540 0.90729 0.91911 1.68466 1.11524 1.39070 1.04084 1.24961 0.90321 0.87503 0.97223 1.68414 1.22778 1.10630 1.21854 1.23067 0.90049 0.99985 0.88315 0.91593 0.91328 0.91141 0.77604 0.92730 0.93671 0.95722 0.90470 0.93832 0.95096 0.93549 0.93785 0.92818 0.93421 0.89988 0.93441 0.95556 0.92876 0.93335 0.81857 0.78920 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.91 37.16 0.33 -0.66 16 2 C -0.06 -0.60 2.93 -92.92 -0.27 -0.87 16 3 H 0.11 0.72 7.95 -51.93 -0.41 0.30 16 4 C 0.51 7.09 6.86 -10.99 -0.08 7.01 16 5 O -0.52 -10.14 14.84 5.55 0.08 -10.05 16 6 N -0.72 -9.14 4.82 -55.06 -0.27 -9.41 16 7 C 0.15 2.45 1.98 -69.21 -0.14 2.31 16 8 H 0.11 2.31 4.73 -51.93 -0.25 2.06 16 9 C -0.15 -2.66 5.39 -27.31 -0.15 -2.81 16 10 C 0.18 4.28 4.68 -2.95 -0.01 4.27 16 11 N -0.59 -13.81 1.86 -172.09 -0.32 -14.13 16 12 C -0.26 -6.82 7.64 -15.06 -0.12 -6.93 16 13 H 0.07 1.82 6.44 -52.48 -0.34 1.48 16 14 C 0.01 0.22 4.81 -17.43 -0.08 0.13 16 15 N -0.90 -26.29 11.10 55.49 0.62 -25.68 16 16 Si 0.89 22.42 29.59 -169.99 -5.03 17.39 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 C 0.17 3.31 4.70 -4.09 -0.02 3.29 16 21 C -0.09 -1.49 0.72 -156.36 -0.11 -1.60 16 22 C -0.13 -1.77 8.37 37.16 0.31 -1.46 16 23 C -0.13 -2.34 6.77 37.15 0.25 -2.08 16 24 C -0.10 -1.38 3.40 -29.78 -0.10 -1.48 16 25 C -0.17 -1.95 4.40 -104.36 -0.46 -2.41 16 26 C 0.18 2.48 9.28 -17.20 -0.16 2.32 16 27 N -0.52 -7.34 10.44 -14.58 -0.15 -7.49 16 28 C 0.29 3.56 12.28 -92.16 -1.13 2.42 16 29 N -0.52 -6.53 10.44 -14.58 -0.15 -6.68 16 30 C 0.15 1.66 10.96 -17.20 -0.19 1.47 16 31 H 0.07 0.53 7.46 -51.93 -0.39 0.14 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.39 7.56 -51.93 -0.39 0.00 16 34 H 0.39 3.50 8.02 -40.82 -0.33 3.18 16 35 H 0.05 1.00 7.84 -51.93 -0.41 0.59 16 36 H 0.04 0.75 7.32 -51.93 -0.38 0.37 16 37 H 0.02 0.63 8.05 -51.93 -0.42 0.22 16 38 H 0.08 2.13 6.33 -51.93 -0.33 1.80 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 41 H 0.05 0.95 7.95 -51.93 -0.41 0.53 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.08 1.75 4.48 -51.93 -0.23 1.52 16 46 H 0.05 0.87 7.50 -51.93 -0.39 0.48 16 47 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.05 0.71 7.36 -51.93 -0.38 0.33 16 49 H 0.05 0.62 8.00 -51.93 -0.42 0.20 16 50 H 0.16 2.16 7.64 -52.48 -0.40 1.75 16 51 H 0.19 1.74 8.06 -52.49 -0.42 1.32 16 52 H 0.17 1.25 8.01 -52.49 -0.42 0.83 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -33.18 396.26 -9.76 -42.94 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -8.38 Total: 4.22 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.12 Total: 2.92 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -0.27 Total: -63.38 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.18 -9.76 -42.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089466678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.970 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds