Wall clock time and date at job start Wed Apr 1 2020 04:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47127 * 2 1 4 4 C 1.50692 * 109.47083 * 239.99642 * 2 1 3 5 5 O 1.21287 * 120.00013 * 239.99662 * 4 2 1 6 6 N 1.34774 * 120.00337 * 60.00251 * 4 2 1 7 7 C 1.46498 * 120.00252 * 179.97438 * 6 4 2 8 8 H 1.08999 * 109.49395 * 324.99899 * 7 6 4 9 9 C 1.50881 * 109.48986 * 85.04692 * 7 6 4 10 10 C 1.53938 * 110.07133 * 211.84623 * 9 7 6 11 11 N 1.47605 * 112.17476 * 319.44548 * 10 9 7 12 12 C 1.36941 * 118.64483 * 137.86290 * 11 10 9 13 13 H 1.08004 * 119.99531 * 205.55068 * 12 11 10 14 14 C 1.38808 * 119.99996 * 25.55460 * 12 11 10 15 15 N 1.31621 * 119.99870 * 17.88722 * 14 12 11 16 16 Si 1.86795 * 120.00070 * 197.88660 * 14 12 11 17 17 H 1.48498 * 109.47259 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47278 * 120.00363 * 16 14 12 19 19 H 1.48504 * 109.47119 * 240.00308 * 16 14 12 20 20 C 1.44582 * 122.71257 * 317.88659 * 11 10 9 21 21 C 1.54860 * 109.59919 * 90.70378 * 20 11 10 22 22 C 1.53001 * 109.33045 * 168.47564 * 21 20 11 23 23 C 1.52993 * 109.33263 * 48.99328 * 21 20 11 24 24 C 1.47098 * 110.32217 * 288.72950 * 21 20 11 25 25 C 1.50700 * 109.46648 * 119.99603 * 2 1 3 26 26 C 1.38594 * 120.80311 * 59.72719 * 25 2 1 27 27 N 1.32337 * 119.10743 * 179.71409 * 26 25 2 28 28 C 1.31791 * 120.81503 * 0.56777 * 27 26 25 29 29 N 1.31796 * 121.75847 * 359.70050 * 28 27 26 30 30 C 1.32341 * 120.81604 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.46674 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47212 * 299.99936 * 1 2 3 33 33 H 1.08991 * 109.46892 * 60.00436 * 1 2 3 34 34 H 0.97001 * 119.99568 * 359.97438 * 6 4 2 35 35 H 1.08999 * 109.36828 * 332.06203 * 9 7 6 36 36 H 1.09006 * 109.36940 * 91.68176 * 9 7 6 37 37 H 1.08999 * 108.94000 * 198.74820 * 10 9 7 38 38 H 1.09006 * 108.86146 * 80.08869 * 10 9 7 39 39 H 0.97000 * 120.00069 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.45100 * 330.66365 * 20 11 10 41 41 H 1.08996 * 109.45016 * 210.74184 * 20 11 10 42 42 H 1.09000 * 109.47418 * 180.86603 * 22 21 20 43 43 H 1.09002 * 109.47137 * 300.86754 * 22 21 20 44 44 H 1.08998 * 109.47159 * 60.86358 * 22 21 20 45 45 H 1.09002 * 109.47229 * 299.13572 * 23 21 20 46 46 H 1.09002 * 109.47178 * 59.13693 * 23 21 20 47 47 H 1.09001 * 109.47211 * 179.12990 * 23 21 20 48 48 H 1.08996 * 108.51798 * 301.55606 * 24 21 20 49 49 H 1.08997 * 108.51867 * 184.05593 * 24 21 20 50 50 H 1.08005 * 120.44456 * 359.97438 * 26 25 2 51 51 H 1.07998 * 119.12684 * 179.72829 * 28 27 26 52 52 H 1.07999 * 120.44779 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1190 6 7 1.7069 -0.2501 -2.4545 7 6 2.1956 -0.9405 -3.6506 8 1 3.1950 -1.3324 -3.4615 9 6 1.2648 -2.0781 -3.9909 10 6 2.0539 -3.2312 -4.6369 11 7 3.0767 -2.7447 -5.5835 12 6 4.3119 -3.3359 -5.5764 13 1 5.1759 -2.7854 -5.9185 14 6 4.4535 -4.6424 -5.1296 15 7 3.4004 -5.4278 -5.0482 16 14 6.1384 -5.2861 -4.6440 17 1 7.1493 -4.2137 -4.8261 18 1 6.1155 -5.7090 -3.2207 19 1 6.4901 -6.4476 -5.4999 20 6 2.8284 -1.6694 -6.5176 21 6 3.2136 -0.3175 -5.8679 22 6 3.2246 0.7745 -6.9394 23 6 4.6093 -0.4313 -5.2516 24 6 2.2458 0.0394 -4.8191 25 6 2.0323 -0.7103 1.2305 26 6 1.7030 -2.0353 1.4693 27 7 2.1671 -2.6279 2.5577 28 6 2.9236 -1.9708 3.4138 29 7 3.2526 -0.7089 3.2224 30 6 2.8298 -0.0526 2.1539 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.1489 0.5384 -2.5435 35 1 0.7822 -2.4348 -3.0810 36 1 0.5037 -1.7264 -4.6875 37 1 1.3592 -3.8806 -5.1696 38 1 2.5440 -3.8064 -3.8513 39 1 3.4993 -6.3410 -4.7363 40 1 1.7713 -1.6563 -6.7833 41 1 3.4261 -1.8237 -7.4159 42 1 3.5104 1.7243 -6.4874 43 1 3.9410 0.5124 -7.7180 44 1 2.2301 0.8648 -7.3764 45 1 4.6048 -1.2030 -4.4818 46 1 5.3284 -0.6956 -6.0269 47 1 4.8891 0.5238 -4.8070 48 1 1.2539 0.0942 -5.2675 49 1 2.5022 1.0258 -4.4327 50 1 1.0795 -2.5780 0.7742 51 1 3.2839 -2.4799 4.2954 52 1 3.1033 0.9812 2.0028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089466678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:46 Heat of formation + Delta-G solvation = 8.791044 kcal Electronic energy + Delta-G solvation = -32405.150410 eV Core-core repulsion = 28404.403500 eV Total energy + Delta-G solvation = -4000.746910 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.22264 -41.20209 -39.89931 -36.35148 -35.98706 -35.76957 -34.69602 -33.27935 -32.28735 -30.83588 -28.77667 -28.18753 -27.20059 -26.34700 -25.58188 -25.46592 -24.47607 -23.17155 -21.20759 -21.12084 -19.52606 -18.80022 -18.62247 -18.59698 -17.67409 -17.41062 -16.73736 -16.25801 -15.93989 -15.79294 -15.70184 -15.48440 -15.16264 -14.95994 -14.67585 -14.57386 -14.53708 -14.50535 -13.85409 -13.57270 -13.38721 -13.19649 -13.14004 -13.00997 -12.76382 -12.72625 -12.58546 -12.55152 -12.41473 -12.23672 -12.00917 -11.84674 -11.78743 -11.72471 -11.45287 -11.36365 -11.24207 -11.01955 -10.77270 -10.40810 -10.36103 -10.23623 -9.97529 -8.60751 -7.84611 -5.25378 -0.12963 0.09560 1.36203 1.41746 1.47795 1.71422 2.23914 2.49392 2.81405 3.19981 3.26209 3.29989 3.48460 3.63129 3.67717 3.73695 3.83214 4.01649 4.05834 4.17574 4.20877 4.37818 4.42903 4.47979 4.52951 4.63000 4.74458 4.75819 4.86858 4.88804 4.91375 4.93219 4.98511 5.00888 5.03377 5.13108 5.13302 5.25128 5.27935 5.34444 5.39576 5.41580 5.50162 5.58307 5.63371 5.68938 5.76529 5.81981 5.87960 5.94120 6.43075 6.69941 7.06114 7.21102 7.42286 7.99938 8.37100 9.20618 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010066 B = 0.003868 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.074318 B = 7237.372624 C = 8847.459548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 H 0.150 0.850 4 C 0.506 3.494 5 O -0.585 6.585 6 N -0.705 5.705 7 C 0.158 3.842 8 H 0.061 0.939 9 C -0.130 4.130 10 C 0.196 3.804 11 N -0.596 5.596 12 C -0.241 4.241 13 H 0.071 0.929 14 C -0.051 4.051 15 N -0.934 5.934 16 Si 0.941 3.059 17 H -0.265 1.265 18 H -0.306 1.306 19 H -0.290 1.290 20 C 0.161 3.839 21 C -0.082 4.082 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.093 4.093 25 C -0.170 4.170 26 C 0.160 3.840 27 N -0.549 5.549 28 C 0.278 3.722 29 N -0.535 5.535 30 C 0.152 3.848 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.416 0.584 35 H 0.048 0.952 36 H 0.072 0.928 37 H -0.008 1.008 38 H 0.025 0.975 39 H 0.243 0.757 40 H 0.044 0.956 41 H 0.034 0.966 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.041 0.959 46 H 0.033 0.967 47 H 0.050 0.950 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.152 0.848 51 H 0.218 0.782 52 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 21.168 8.619 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 H 0.168 0.832 4 C 0.293 3.707 5 O -0.464 6.464 6 N -0.357 5.357 7 C 0.053 3.947 8 H 0.079 0.921 9 C -0.170 4.170 10 C 0.070 3.930 11 N -0.317 5.317 12 C -0.372 4.372 13 H 0.089 0.911 14 C -0.246 4.246 15 N -0.582 5.582 16 Si 0.772 3.228 17 H -0.190 1.190 18 H -0.234 1.234 19 H -0.217 1.217 20 C 0.035 3.965 21 C -0.085 4.085 22 C -0.184 4.184 23 C -0.182 4.182 24 C -0.131 4.131 25 C -0.175 4.175 26 C -0.004 4.004 27 N -0.263 5.263 28 C -0.010 4.010 29 N -0.249 5.249 30 C -0.014 4.014 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.010 0.990 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.169 0.831 51 H 0.234 0.766 52 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.130 19.843 9.528 23.466 hybrid contribution 0.619 -1.120 -0.515 1.380 sum -7.511 18.723 9.014 22.095 Atomic orbital electron populations 1.21849 0.89521 1.02979 1.05237 1.20230 0.99332 1.01037 0.86551 0.83194 1.21117 0.79586 0.84225 0.85791 1.90826 1.39743 1.28567 1.87276 1.45975 1.53121 1.32041 1.04555 1.20241 0.97625 0.92115 0.84671 0.92108 1.22211 0.98281 0.96875 0.99613 1.20567 0.89292 0.92101 0.91071 1.43764 1.11011 1.38369 1.38547 1.19547 0.86768 0.93396 1.37441 0.91134 1.25557 0.98959 0.96498 1.03559 1.70216 1.29754 1.06039 1.52145 0.85574 0.82150 0.78365 0.76746 1.18958 1.23381 1.21684 1.20964 0.97807 0.86898 0.90879 1.20306 0.95067 0.96882 0.96277 1.21735 1.02132 0.97088 0.97443 1.21825 0.96400 0.99938 1.00066 1.20540 1.00441 0.98062 0.94039 1.21330 1.01076 0.96364 0.98706 1.23064 0.93302 0.92110 0.91973 1.68429 1.12733 1.40162 1.04948 1.25463 0.89962 0.87889 0.97645 1.68490 1.23081 1.10614 1.22674 1.23736 0.88779 1.01461 0.87376 0.93439 0.89276 0.88749 0.74634 0.93345 0.90977 0.99005 0.95647 0.94805 0.93790 0.94783 0.91468 0.93361 0.91522 0.94046 0.94782 0.93071 0.90449 0.90023 0.83088 0.76602 0.77892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.91 71.98 0.64 -0.82 16 2 C -0.05 -0.77 2.93 -12.29 -0.04 -0.80 16 3 H 0.15 1.14 7.95 -2.39 -0.02 1.12 16 4 C 0.51 13.39 6.86 87.65 0.60 13.99 16 5 O -0.58 -23.64 14.84 -3.05 -0.05 -23.68 16 6 N -0.71 -15.76 4.82 -446.51 -2.15 -17.91 16 7 C 0.16 4.96 1.98 44.16 0.09 5.05 16 8 H 0.06 2.61 4.73 -2.39 -0.01 2.60 16 9 C -0.13 -4.72 5.39 30.22 0.16 -4.56 16 10 C 0.20 9.70 4.68 86.48 0.40 10.10 16 11 N -0.60 -28.89 1.86 -698.37 -1.30 -30.19 16 12 C -0.24 -13.25 7.64 84.03 0.64 -12.61 16 13 H 0.07 3.80 6.44 -2.91 -0.02 3.78 16 14 C -0.05 -2.99 4.81 84.86 0.41 -2.58 16 15 N -0.93 -58.17 11.10 21.65 0.24 -57.93 16 16 Si 0.94 48.40 29.59 68.60 2.03 50.43 16 17 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 18 H -0.31 -16.41 7.11 99.48 0.71 -15.71 16 19 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 20 C 0.16 6.17 4.70 87.37 0.41 6.58 16 21 C -0.08 -2.41 0.72 -53.38 -0.04 -2.45 16 22 C -0.13 -2.76 8.37 71.98 0.60 -2.15 16 23 C -0.13 -4.31 6.77 71.98 0.49 -3.82 16 24 C -0.09 -2.28 3.40 28.62 0.10 -2.19 16 25 C -0.17 -3.70 4.40 -19.69 -0.09 -3.79 16 26 C 0.16 4.49 9.28 84.70 0.79 5.28 16 27 N -0.55 -16.18 10.44 -200.05 -2.09 -18.27 16 28 C 0.28 6.88 12.28 180.88 2.22 9.10 16 29 N -0.54 -12.69 10.44 -200.04 -2.09 -14.78 16 30 C 0.15 2.98 10.96 84.70 0.93 3.91 16 31 H 0.05 0.70 7.46 -2.38 -0.02 0.68 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 0.57 7.56 -2.39 -0.02 0.55 16 34 H 0.42 5.25 8.02 -92.71 -0.74 4.51 16 35 H 0.05 1.80 7.84 -2.39 -0.02 1.78 16 36 H 0.07 2.24 7.32 -2.38 -0.02 2.22 16 37 H -0.01 -0.44 8.05 -2.39 -0.02 -0.46 16 38 H 0.02 1.50 6.33 -2.38 -0.02 1.49 16 39 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.04 1.57 8.07 -2.39 -0.02 1.55 16 41 H 0.03 1.37 7.95 -2.39 -0.02 1.35 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.04 1.78 4.48 -2.39 -0.01 1.77 16 46 H 0.03 1.22 7.50 -2.39 -0.02 1.20 16 47 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.08 1.62 7.36 -2.39 -0.02 1.60 16 49 H 0.08 1.56 8.00 -2.39 -0.02 1.54 16 50 H 0.15 4.38 7.64 -2.91 -0.02 4.36 16 51 H 0.22 3.88 8.06 -2.91 -0.02 3.86 16 52 H 0.20 2.19 8.01 -2.91 -0.02 2.17 16 Total: -1.00 -81.65 396.26 3.10 -78.55 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.18 Total: 15.56 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 8.32 Total: 18.23 kcal Atomic # 7 Polarization: -131.70 SS G_CDS: -7.39 Total: -139.08 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.68 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.03 Total: 50.43 kcal Total: -81.65 3.10 -78.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089466678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.342 kcal (2) G-P(sol) polarization free energy of solvation -81.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds