Wall clock time and date at job start Wed Apr 1 2020 04:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46901 * 2 1 4 4 C 1.53004 * 109.47379 * 119.99587 * 2 1 3 5 5 C 1.50703 * 109.47121 * 295.00403 * 4 2 1 6 6 C 1.39872 * 126.03848 * 270.02113 * 5 4 2 7 7 N 1.30838 * 108.20312 * 179.97438 * 6 5 4 8 8 N 1.40088 * 108.20068 * 359.77854 * 7 6 5 9 9 C 1.46503 * 126.03204 * 180.22797 * 8 7 6 10 10 C 1.34940 * 107.93023 * 0.36844 * 8 7 6 11 11 C 1.50700 * 109.47484 * 239.99561 * 2 1 3 12 12 O 1.21274 * 120.00225 * 240.00398 * 11 2 1 13 13 N 1.34780 * 119.99548 * 60.00026 * 11 2 1 14 14 C 1.47214 * 126.70330 * 359.68452 * 13 11 2 15 15 C 1.54062 * 106.23171 * 148.68905 * 14 13 11 16 16 H 1.09008 * 111.72047 * 140.80579 * 15 14 13 17 17 C 1.53775 * 109.52020 * 266.26871 * 15 14 13 18 18 N 1.47211 * 106.37573 * 131.52870 * 17 15 14 19 19 C 1.36943 * 126.70274 * 148.72852 * 18 17 15 20 20 H 1.07996 * 120.00132 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99851 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99976 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46728 * 60.00253 * 23 21 19 25 25 H 1.48494 * 109.47329 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47360 * 300.00185 * 23 21 19 27 27 C 1.48973 * 107.08008 * 329.17903 * 18 17 15 28 28 C 1.53781 * 105.49973 * 30.34596 * 27 18 17 29 29 C 1.53002 * 111.85785 * 104.53141 * 28 27 18 30 30 C 1.47212 * 126.70062 * 180.02562 * 13 11 2 31 31 H 1.09004 * 109.47377 * 300.00127 * 1 2 3 32 32 H 1.09000 * 109.47281 * 60.00508 * 1 2 3 33 33 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47232 * 174.99889 * 4 2 1 35 35 H 1.09003 * 109.46566 * 54.99710 * 4 2 1 36 36 H 1.08001 * 125.89521 * 359.94624 * 6 5 4 37 37 H 1.08998 * 109.47306 * 270.15996 * 9 8 7 38 38 H 1.09006 * 109.46968 * 30.16307 * 9 8 7 39 39 H 1.08996 * 109.46982 * 150.15513 * 9 8 7 40 40 H 1.08002 * 126.13053 * 179.90865 * 10 8 7 41 41 H 1.08997 * 110.07553 * 267.99671 * 14 13 11 42 42 H 1.09002 * 110.07244 * 29.54050 * 14 13 11 43 43 H 1.09002 * 110.07771 * 250.75651 * 17 15 14 44 44 H 1.09002 * 110.07587 * 12.24064 * 17 15 14 45 45 H 0.97003 * 119.99897 * 179.97438 * 22 21 19 46 46 H 1.08993 * 110.08274 * 271.61734 * 27 18 17 47 47 H 1.09006 * 110.91404 * 149.50997 * 27 18 17 48 48 H 1.09002 * 109.47330 * 182.04427 * 29 28 27 49 49 H 1.08994 * 109.47255 * 302.04811 * 29 28 27 50 50 H 1.09011 * 109.46915 * 62.05108 * 29 28 27 51 51 H 1.09000 * 110.07589 * 330.46803 * 30 13 11 52 52 H 1.09010 * 110.07546 * 91.95273 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 6 2.3898 1.0673 3.0896 7 7 1.7177 1.5037 4.1239 8 7 0.5161 0.7873 4.1988 9 6 -0.5317 0.9649 5.2072 10 6 0.4957 -0.0973 3.1800 11 6 2.0324 -0.7105 -1.2304 12 8 2.7296 -1.6965 -1.1190 13 7 1.7068 -0.2500 -2.4545 14 6 0.8700 0.9220 -2.7598 15 6 1.4053 1.5003 -4.0836 16 1 0.5974 1.8432 -4.7301 17 6 2.4318 2.6054 -3.7838 18 7 3.6073 2.3185 -4.6223 19 6 4.4730 3.2340 -5.1588 20 1 5.3049 2.9016 -5.7620 21 6 4.2812 4.5891 -4.9274 22 7 3.2676 4.9942 -4.1919 23 14 5.4625 5.8379 -5.6586 24 1 5.4515 5.7217 -7.1391 25 1 5.0407 7.2068 -5.2670 26 1 6.8338 5.5780 -5.1518 27 6 3.6752 0.8397 -4.7894 28 6 2.2178 0.3523 -4.7314 29 6 1.6844 -0.0148 -6.1177 30 6 2.1128 -0.8251 -3.7475 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1263 -0.7994 1.2056 35 1 1.6054 -1.7197 1.2952 36 1 3.3559 1.4250 2.7654 37 1 -0.3345 0.3095 6.0555 38 1 -0.5403 2.0018 5.5435 39 1 -1.4998 0.7159 4.7729 40 1 -0.2954 -0.7996 2.9622 41 1 -0.1707 0.6190 -2.8748 42 1 0.9590 1.6625 -1.9649 43 1 2.0178 3.5804 -4.0410 44 1 2.7085 2.5830 -2.7298 45 1 3.1338 5.9412 -4.0298 46 1 4.2503 0.3972 -3.9762 47 1 4.1199 0.5766 -5.7492 48 1 0.6410 -0.3194 -6.0366 49 1 1.7603 0.8499 -6.7769 50 1 2.2720 -0.8366 -6.5272 51 1 3.0796 -1.3189 -3.6502 52 1 1.3626 -1.5367 -4.0926 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092151157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:48 Heat of formation + Delta-G solvation = 72.020269 kcal Electronic energy + Delta-G solvation = -31551.485137 eV Core-core repulsion = 27553.480052 eV Total energy + Delta-G solvation = -3998.005085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.36641 -40.31417 -38.41914 -35.13717 -34.87645 -33.24537 -32.69234 -30.86285 -30.26480 -29.89283 -27.96103 -26.47454 -25.99861 -25.61077 -25.05490 -23.17781 -21.92822 -21.15178 -20.25401 -20.16001 -19.01222 -18.40500 -17.12996 -16.75511 -16.38660 -15.81485 -15.63316 -15.12019 -14.79130 -14.65316 -14.42912 -13.99661 -13.79019 -13.52479 -13.41737 -13.29138 -13.10753 -12.87622 -12.73806 -12.56043 -12.46246 -12.31842 -12.06983 -11.81838 -11.65187 -11.60563 -11.37879 -11.13440 -11.08237 -10.93524 -10.86840 -10.73919 -10.54783 -10.13922 -10.09238 -9.96839 -9.74567 -9.54474 -9.48908 -9.39706 -8.70725 -8.44358 -8.33501 -6.87383 -5.63693 -3.07920 1.75364 2.38184 2.68492 2.90826 3.31363 3.40554 3.45025 3.45969 4.32670 4.47363 4.61719 4.66767 4.84384 4.90839 4.95067 4.97416 5.02470 5.08812 5.11908 5.25074 5.41508 5.44039 5.49463 5.50168 5.54995 5.60508 5.66177 5.70110 5.76544 5.81568 5.87277 5.94183 6.01033 6.03330 6.08742 6.19139 6.21257 6.28611 6.32998 6.40453 6.46346 6.55693 6.57224 6.66885 6.81982 6.86590 6.95948 7.44389 7.58567 7.58671 7.81099 7.86594 8.38609 8.43662 9.21280 9.80780 10.49206 11.37259 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.002963 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.476697 B = 9446.166319 C =11081.436507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 H 0.099 0.901 4 C -0.019 4.019 5 C -0.227 4.227 6 C 0.056 3.944 7 N -0.299 5.299 8 N -0.381 5.381 9 C 0.103 3.897 10 C 0.055 3.945 11 C 0.537 3.463 12 O -0.551 6.551 13 N -0.608 5.608 14 C 0.109 3.891 15 C -0.116 4.116 16 H 0.086 0.914 17 C 0.148 3.852 18 N -0.597 5.597 19 C -0.216 4.216 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.923 5.923 23 Si 0.915 3.085 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.141 3.859 28 C -0.086 4.086 29 C -0.122 4.122 30 C 0.119 3.881 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.184 0.816 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.171 0.829 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.007 0.993 45 H 0.252 0.748 46 H 0.022 0.978 47 H 0.044 0.956 48 H 0.049 0.951 49 H 0.064 0.936 50 H 0.051 0.949 51 H 0.076 0.924 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.187 -11.067 11.621 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 H 0.117 0.883 4 C -0.058 4.058 5 C -0.239 4.239 6 C -0.130 4.130 7 N -0.120 5.120 8 N -0.164 5.164 9 C -0.039 4.039 10 C -0.091 4.091 11 C 0.327 3.673 12 O -0.429 6.429 13 N -0.340 5.340 14 C -0.014 4.014 15 C -0.136 4.136 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.321 5.321 19 C -0.345 4.345 20 H 0.095 0.905 21 C -0.208 4.208 22 N -0.572 5.572 23 Si 0.746 3.254 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.015 3.985 28 C -0.088 4.088 29 C -0.180 4.180 30 C -0.004 4.004 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.201 0.799 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.188 0.812 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.140 0.860 44 H 0.024 0.976 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.083 0.917 50 H 0.070 0.930 51 H 0.095 0.905 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.873 -10.521 12.881 20.435 hybrid contribution 0.531 0.131 -1.002 1.141 sum -11.342 -10.390 11.879 19.435 Atomic orbital electron populations 1.21912 0.93346 1.02209 1.02975 1.21230 0.97479 1.01260 0.92303 0.88280 1.19655 1.01738 0.96710 0.87707 1.20085 0.96689 1.04533 1.02547 1.23895 1.00258 0.95835 0.93058 1.77374 0.93938 1.18970 1.21726 1.48450 1.15883 1.28769 1.23249 1.21815 0.87712 1.04126 0.90201 1.22307 1.00011 0.96228 0.90558 1.20272 0.79627 0.84160 0.83277 1.90662 1.38844 1.27122 1.86288 1.48441 1.50774 1.29644 1.05180 1.22332 0.93246 0.87305 0.98535 1.23174 0.99226 0.97107 0.94116 0.89610 1.21924 0.85334 0.98127 0.92396 1.44906 1.29673 0.99132 1.58374 1.19068 1.04475 0.86307 1.24616 0.90515 1.24748 0.98790 0.96803 1.00447 1.69579 1.30498 1.14069 1.43065 0.86135 0.80132 0.80551 0.78600 1.21223 1.21578 1.21270 1.21779 0.91996 0.86524 0.98204 1.22136 0.98245 0.94036 0.94405 1.21638 0.99578 1.01406 0.95373 1.22066 1.00492 0.95438 0.82430 0.91640 0.91572 0.92532 0.90237 0.90952 0.79947 0.90977 0.89371 0.89597 0.81179 0.92167 0.90205 0.86013 0.97558 0.93665 0.96058 0.93726 0.93168 0.91674 0.92958 0.90509 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.68 37.16 0.32 -1.18 16 2 C -0.10 -1.29 2.04 -91.77 -0.19 -1.48 16 3 H 0.10 1.35 7.87 -51.93 -0.41 0.94 16 4 C -0.02 -0.23 4.52 -27.88 -0.13 -0.35 16 5 C -0.23 -2.56 4.82 -105.05 -0.51 -3.07 16 6 C 0.06 0.69 11.96 -17.36 -0.21 0.48 16 7 N -0.30 -3.90 12.58 30.63 0.39 -3.52 16 8 N -0.38 -3.90 4.01 -68.16 -0.27 -4.17 16 9 C 0.10 0.60 11.47 59.85 0.69 1.28 16 10 C 0.05 0.52 10.02 -17.23 -0.17 0.35 16 11 C 0.54 8.65 7.24 -10.98 -0.08 8.57 16 12 O -0.55 -10.47 16.15 5.56 0.09 -10.38 16 13 N -0.61 -9.60 3.31 -171.39 -0.57 -10.16 16 14 C 0.11 1.60 4.56 -3.10 -0.01 1.58 16 15 C -0.12 -2.03 3.68 -88.69 -0.33 -2.36 16 16 H 0.09 1.43 7.88 -51.92 -0.41 1.02 16 17 C 0.15 3.41 5.73 -3.25 -0.02 3.39 16 18 N -0.60 -14.97 3.43 -169.69 -0.58 -15.55 16 19 C -0.22 -5.94 10.33 -15.06 -0.16 -6.10 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 22 N -0.92 -26.20 10.08 55.49 0.56 -25.64 16 23 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.14 2.94 6.51 -2.27 -0.01 2.92 16 28 C -0.09 -1.45 1.08 -152.71 -0.16 -1.61 16 29 C -0.12 -1.75 8.43 37.16 0.31 -1.44 16 30 C 0.12 1.87 5.96 -3.24 -0.02 1.85 16 31 H 0.06 0.61 6.42 -51.93 -0.33 0.28 16 32 H 0.07 0.68 5.15 -51.93 -0.27 0.41 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.06 0.73 7.55 -51.93 -0.39 0.34 16 42 H 0.08 1.18 6.28 -51.93 -0.33 0.85 16 43 H 0.12 3.19 5.45 -51.93 -0.28 2.90 16 44 H 0.01 0.16 7.41 -51.93 -0.38 -0.22 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.02 0.47 7.38 -51.93 -0.38 0.09 16 47 H 0.04 0.90 7.82 -51.93 -0.41 0.49 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 51 H 0.08 1.31 7.26 -51.93 -0.38 0.93 16 52 H 0.06 0.83 7.87 -51.92 -0.41 0.42 16 LS Contribution 402.63 15.07 6.07 6.07 Total: -1.00 -33.70 402.63 -8.68 -42.38 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.57 Total: 1.72 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.77 Total: 2.38 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.48 Total: -59.04 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.70 -8.68 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092151157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.400 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds