Wall clock time and date at job start Wed Apr 1 2020 04:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46901 * 2 1 4 4 C 1.53004 * 109.47379 * 119.99587 * 2 1 3 5 5 C 1.50703 * 109.47121 * 295.00403 * 4 2 1 6 6 C 1.39872 * 126.03848 * 270.02113 * 5 4 2 7 7 N 1.30838 * 108.20312 * 179.97438 * 6 5 4 8 8 N 1.40088 * 108.20068 * 359.77854 * 7 6 5 9 9 C 1.46503 * 126.03204 * 180.22797 * 8 7 6 10 10 C 1.34940 * 107.93023 * 0.36844 * 8 7 6 11 11 C 1.50700 * 109.47484 * 239.99561 * 2 1 3 12 12 O 1.21274 * 120.00225 * 240.00398 * 11 2 1 13 13 N 1.34780 * 119.99548 * 60.00026 * 11 2 1 14 14 C 1.47214 * 126.70330 * 359.68452 * 13 11 2 15 15 C 1.54062 * 106.23171 * 148.68905 * 14 13 11 16 16 H 1.09008 * 111.72047 * 140.80579 * 15 14 13 17 17 C 1.53775 * 109.52020 * 266.26871 * 15 14 13 18 18 N 1.47211 * 106.37573 * 131.52870 * 17 15 14 19 19 C 1.36943 * 126.70274 * 148.72852 * 18 17 15 20 20 H 1.07996 * 120.00132 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99851 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99976 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46728 * 60.00253 * 23 21 19 25 25 H 1.48494 * 109.47329 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47360 * 300.00185 * 23 21 19 27 27 C 1.48973 * 107.08008 * 329.17903 * 18 17 15 28 28 C 1.53781 * 105.49973 * 30.34596 * 27 18 17 29 29 C 1.53002 * 111.85785 * 104.53141 * 28 27 18 30 30 C 1.47212 * 126.70062 * 180.02562 * 13 11 2 31 31 H 1.09004 * 109.47377 * 300.00127 * 1 2 3 32 32 H 1.09000 * 109.47281 * 60.00508 * 1 2 3 33 33 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47232 * 174.99889 * 4 2 1 35 35 H 1.09003 * 109.46566 * 54.99710 * 4 2 1 36 36 H 1.08001 * 125.89521 * 359.94624 * 6 5 4 37 37 H 1.08998 * 109.47306 * 270.15996 * 9 8 7 38 38 H 1.09006 * 109.46968 * 30.16307 * 9 8 7 39 39 H 1.08996 * 109.46982 * 150.15513 * 9 8 7 40 40 H 1.08002 * 126.13053 * 179.90865 * 10 8 7 41 41 H 1.08997 * 110.07553 * 267.99671 * 14 13 11 42 42 H 1.09002 * 110.07244 * 29.54050 * 14 13 11 43 43 H 1.09002 * 110.07771 * 250.75651 * 17 15 14 44 44 H 1.09002 * 110.07587 * 12.24064 * 17 15 14 45 45 H 0.97003 * 119.99897 * 179.97438 * 22 21 19 46 46 H 1.08993 * 110.08274 * 271.61734 * 27 18 17 47 47 H 1.09006 * 110.91404 * 149.50997 * 27 18 17 48 48 H 1.09002 * 109.47330 * 182.04427 * 29 28 27 49 49 H 1.08994 * 109.47255 * 302.04811 * 29 28 27 50 50 H 1.09011 * 109.46915 * 62.05108 * 29 28 27 51 51 H 1.09000 * 110.07589 * 330.46803 * 30 13 11 52 52 H 1.09010 * 110.07546 * 91.95273 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 6 2.3898 1.0673 3.0896 7 7 1.7177 1.5037 4.1239 8 7 0.5161 0.7873 4.1988 9 6 -0.5317 0.9649 5.2072 10 6 0.4957 -0.0973 3.1800 11 6 2.0324 -0.7105 -1.2304 12 8 2.7296 -1.6965 -1.1190 13 7 1.7068 -0.2500 -2.4545 14 6 0.8700 0.9220 -2.7598 15 6 1.4053 1.5003 -4.0836 16 1 0.5974 1.8432 -4.7301 17 6 2.4318 2.6054 -3.7838 18 7 3.6073 2.3185 -4.6223 19 6 4.4730 3.2340 -5.1588 20 1 5.3049 2.9016 -5.7620 21 6 4.2812 4.5891 -4.9274 22 7 3.2676 4.9942 -4.1919 23 14 5.4625 5.8379 -5.6586 24 1 5.4515 5.7217 -7.1391 25 1 5.0407 7.2068 -5.2670 26 1 6.8338 5.5780 -5.1518 27 6 3.6752 0.8397 -4.7894 28 6 2.2178 0.3523 -4.7314 29 6 1.6844 -0.0148 -6.1177 30 6 2.1128 -0.8251 -3.7475 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1263 -0.7994 1.2056 35 1 1.6054 -1.7197 1.2952 36 1 3.3559 1.4250 2.7654 37 1 -0.3345 0.3095 6.0555 38 1 -0.5403 2.0018 5.5435 39 1 -1.4998 0.7159 4.7729 40 1 -0.2954 -0.7996 2.9622 41 1 -0.1707 0.6190 -2.8748 42 1 0.9590 1.6625 -1.9649 43 1 2.0178 3.5804 -4.0410 44 1 2.7085 2.5830 -2.7298 45 1 3.1338 5.9412 -4.0298 46 1 4.2503 0.3972 -3.9762 47 1 4.1199 0.5766 -5.7492 48 1 0.6410 -0.3194 -6.0366 49 1 1.7603 0.8499 -6.7769 50 1 2.2720 -0.8366 -6.5272 51 1 3.0796 -1.3189 -3.6502 52 1 1.3626 -1.5367 -4.0926 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092151157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:47 Heat of formation + Delta-G solvation = 51.385666 kcal Electronic energy + Delta-G solvation = -31552.379920 eV Core-core repulsion = 27553.480052 eV Total energy + Delta-G solvation = -3998.899868 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.20563 -41.62247 -39.79878 -36.53976 -36.14387 -34.49696 -33.81561 -32.51532 -31.59801 -31.09875 -28.68651 -27.86513 -27.47308 -26.69960 -26.44578 -24.56188 -23.21609 -22.00723 -21.87710 -21.05041 -20.34452 -19.69751 -18.75397 -18.05294 -17.38200 -17.06376 -16.84696 -16.46575 -16.09670 -15.84111 -15.55463 -15.35687 -15.26511 -14.99375 -14.53069 -14.29865 -14.10589 -13.83470 -13.81444 -13.56157 -13.48382 -13.34216 -13.25163 -13.15359 -13.09735 -12.92209 -12.81513 -12.64350 -12.61237 -12.29136 -12.12472 -12.03086 -11.94619 -11.80877 -11.48406 -11.44324 -11.38087 -11.12814 -10.79591 -10.68348 -10.32993 -9.61300 -9.26605 -8.90668 -7.73024 -5.20538 0.97254 1.46573 1.49199 1.55413 1.65239 1.72932 1.77628 2.14323 2.49477 3.31303 3.39438 3.52996 3.65333 3.76884 3.89595 3.95173 3.99405 4.08601 4.13841 4.26757 4.32331 4.35802 4.42755 4.47392 4.49653 4.56126 4.67599 4.67977 4.73017 4.76307 4.77939 4.79705 4.88678 4.91186 4.95226 4.98112 5.02112 5.10945 5.20433 5.22227 5.24590 5.30039 5.36541 5.40893 5.46888 5.55878 5.64313 5.68926 5.84521 6.19781 6.38258 6.61179 6.74830 7.12613 7.18123 7.77294 8.45540 9.24654 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.002963 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.476697 B = 9446.166319 C =11081.436507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 H 0.083 0.917 4 C -0.008 4.008 5 C -0.245 4.245 6 C 0.036 3.964 7 N -0.336 5.336 8 N -0.380 5.380 9 C 0.092 3.908 10 C 0.072 3.928 11 C 0.531 3.469 12 O -0.586 6.586 13 N -0.612 5.612 14 C 0.116 3.884 15 C -0.108 4.108 16 H 0.103 0.897 17 C 0.153 3.847 18 N -0.620 5.620 19 C -0.235 4.235 20 H 0.076 0.924 21 C -0.064 4.064 22 N -0.944 5.944 23 Si 0.978 3.022 24 H -0.275 1.275 25 H -0.292 1.292 26 H -0.285 1.285 27 C 0.137 3.863 28 C -0.076 4.076 29 C -0.115 4.115 30 C 0.121 3.879 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.181 0.819 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.210 0.790 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.092 0.908 44 H -0.024 1.024 45 H 0.247 0.753 46 H 0.001 0.999 47 H 0.048 0.952 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.067 0.933 51 H 0.057 0.943 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.166 -12.554 11.472 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.102 0.898 4 C -0.047 4.047 5 C -0.256 4.256 6 C -0.148 4.148 7 N -0.159 5.159 8 N -0.162 5.162 9 C -0.047 4.047 10 C -0.075 4.075 11 C 0.322 3.678 12 O -0.467 6.467 13 N -0.344 5.344 14 C -0.006 4.006 15 C -0.129 4.129 16 H 0.121 0.879 17 C 0.028 3.972 18 N -0.344 5.344 19 C -0.364 4.364 20 H 0.094 0.906 21 C -0.257 4.257 22 N -0.594 5.594 23 Si 0.806 3.194 24 H -0.201 1.201 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.012 3.988 28 C -0.078 4.078 29 C -0.173 4.173 30 C -0.002 4.002 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.198 0.802 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.136 0.864 40 H 0.226 0.774 41 H 0.122 0.878 42 H 0.093 0.907 43 H 0.109 0.891 44 H -0.006 1.006 45 H 0.057 0.943 46 H 0.019 0.981 47 H 0.066 0.934 48 H 0.100 0.900 49 H 0.065 0.935 50 H 0.086 0.914 51 H 0.076 0.924 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.865 -12.014 12.731 22.965 hybrid contribution 1.512 0.589 -0.903 1.857 sum -13.354 -11.425 11.829 21.184 Atomic orbital electron populations 1.21874 0.90659 1.03325 1.03708 1.21225 0.99614 0.99763 0.91016 0.89850 1.19488 1.00244 0.97125 0.87854 1.20030 0.97750 1.04926 1.02926 1.24030 1.00688 0.96598 0.93531 1.77303 0.95605 1.20571 1.22384 1.48830 1.15544 1.28026 1.23834 1.22201 0.87861 1.04559 0.90110 1.22815 0.99872 0.95626 0.89200 1.20877 0.78975 0.83863 0.84100 1.90639 1.40329 1.28886 1.86801 1.48565 1.50792 1.29787 1.05252 1.22360 0.94872 0.86803 0.96576 1.23046 0.98164 0.95391 0.96257 0.87864 1.21709 0.86125 0.99041 0.90345 1.45218 1.30049 1.00719 1.58443 1.19395 1.05101 0.87287 1.24649 0.90592 1.25535 1.00509 0.98449 1.01193 1.69846 1.31712 1.13838 1.44004 0.85163 0.78048 0.77950 0.78228 1.20140 1.21750 1.21133 1.21919 0.95051 0.84372 0.97468 1.22056 0.95021 0.94081 0.96594 1.21598 1.01648 1.01195 0.92835 1.22069 1.00706 0.95209 0.82197 0.90423 0.91292 0.91125 0.92694 0.90165 0.80240 0.89591 0.89566 0.86361 0.77380 0.87844 0.90685 0.89079 1.00615 0.94265 0.98109 0.93361 0.89997 0.93472 0.91431 0.92411 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.68 71.98 0.62 -1.81 16 2 C -0.09 -2.36 2.04 -11.54 -0.02 -2.39 16 3 H 0.08 2.35 7.87 -2.39 -0.02 2.33 16 4 C -0.01 -0.19 4.52 29.85 0.13 -0.06 16 5 C -0.24 -5.38 4.82 -20.14 -0.10 -5.48 16 6 C 0.04 0.93 11.96 85.24 1.02 1.95 16 7 N -0.34 -8.81 12.58 -57.02 -0.72 -9.53 16 8 N -0.38 -7.08 4.01 -369.56 -1.48 -8.56 16 9 C 0.09 0.82 11.47 127.77 1.47 2.29 16 10 C 0.07 1.19 10.02 83.54 0.84 2.03 16 11 C 0.53 16.86 7.24 87.66 0.63 17.49 16 12 O -0.59 -22.42 16.15 -3.01 -0.05 -22.47 16 13 N -0.61 -18.49 3.31 -814.55 -2.70 -21.19 16 14 C 0.12 3.16 4.56 86.60 0.39 3.56 16 15 C -0.11 -3.66 3.68 -9.54 -0.04 -3.70 16 16 H 0.10 3.18 7.88 -2.38 -0.02 3.16 16 17 C 0.15 7.29 5.73 86.50 0.50 7.79 16 18 N -0.62 -32.09 3.43 -690.76 -2.37 -34.46 16 19 C -0.24 -13.31 10.33 84.03 0.87 -12.44 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 22 N -0.94 -55.33 10.08 21.65 0.22 -55.12 16 23 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 26 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 27 C 0.14 5.82 6.51 86.16 0.56 6.38 16 28 C -0.08 -2.43 1.08 -51.02 -0.06 -2.49 16 29 C -0.12 -2.96 8.43 71.98 0.61 -2.35 16 30 C 0.12 3.59 5.96 86.51 0.52 4.11 16 31 H 0.08 1.19 6.42 -2.38 -0.02 1.18 16 32 H 0.07 1.18 5.15 -2.39 -0.01 1.16 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.54 7.95 -2.39 -0.02 1.53 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.18 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.21 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.10 2.03 7.55 -2.39 -0.02 2.01 16 42 H 0.07 2.15 6.28 -2.39 -0.01 2.13 16 43 H 0.09 4.95 5.45 -2.39 -0.01 4.94 16 44 H -0.02 -1.26 7.41 -2.39 -0.02 -1.27 16 45 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.00 0.05 7.38 -2.39 -0.02 0.03 16 47 H 0.05 1.97 7.82 -2.38 -0.02 1.95 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 51 H 0.06 1.95 7.26 -2.39 -0.02 1.93 16 52 H 0.09 2.20 7.87 -2.38 -0.02 2.18 16 Total: -1.00 -77.42 402.63 4.25 -73.16 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.90 Total: 18.56 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 8.41 Total: 11.71 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -7.05 Total: -128.85 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.05 Total: -22.47 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -77.42 4.25 -73.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092151157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.550 kcal (2) G-P(sol) polarization free energy of solvation -77.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds