Wall clock time and date at job start Wed Apr 1 2020 04:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46968 * 2 1 4 4 C 1.52993 * 109.47054 * 239.99796 * 2 1 3 5 5 C 1.50702 * 109.47330 * 65.00042 * 4 2 1 6 6 C 1.39867 * 126.03665 * 269.69306 * 5 4 2 7 7 N 1.30838 * 108.19993 * 179.81564 * 6 5 4 8 8 N 1.40084 * 108.20576 * 0.43751 * 7 6 5 9 9 C 1.46497 * 126.03883 * 179.69897 * 8 7 6 10 10 C 1.34944 * 107.92262 * 359.71810 * 8 7 6 11 11 C 1.50707 * 109.47064 * 119.99611 * 2 1 3 12 12 O 1.21284 * 119.99583 * 85.17904 * 11 2 1 13 13 N 1.34768 * 120.00040 * 265.17721 * 11 2 1 14 14 C 1.47212 * 126.70486 * 4.67092 * 13 11 2 15 15 C 1.54061 * 106.23984 * 148.68875 * 14 13 11 16 16 H 1.08991 * 111.72696 * 140.79927 * 15 14 13 17 17 C 1.53781 * 109.51798 * 266.26915 * 15 14 13 18 18 N 1.47220 * 106.37509 * 131.52179 * 17 15 14 19 19 C 1.36942 * 126.70012 * 148.72982 * 18 17 15 20 20 H 1.07995 * 119.99904 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00021 * 0.02562 * 19 18 17 22 22 N 1.31624 * 119.99828 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99846 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46793 * 90.00070 * 23 21 19 25 25 H 1.48501 * 109.46646 * 209.99658 * 23 21 19 26 26 H 1.48494 * 109.47202 * 329.99699 * 23 21 19 27 27 C 1.48973 * 107.08188 * 329.18009 * 18 17 15 28 28 C 1.53786 * 105.49730 * 30.34420 * 27 18 17 29 29 C 1.53005 * 111.85657 * 104.53819 * 28 27 18 30 30 C 1.47214 * 126.70002 * 184.98287 * 13 11 2 31 31 H 1.08992 * 109.47191 * 53.88383 * 1 2 3 32 32 H 1.09003 * 109.47086 * 173.88621 * 1 2 3 33 33 H 1.09000 * 109.47215 * 293.88241 * 1 2 3 34 34 H 1.09005 * 109.47238 * 305.00214 * 4 2 1 35 35 H 1.09002 * 109.47097 * 185.00101 * 4 2 1 36 36 H 1.08002 * 125.90075 * 359.97438 * 6 5 4 37 37 H 1.09008 * 109.46864 * 270.02528 * 9 8 7 38 38 H 1.09001 * 109.47413 * 30.02434 * 9 8 7 39 39 H 1.08996 * 109.47367 * 150.02472 * 9 8 7 40 40 H 1.08003 * 126.12614 * 179.97438 * 10 8 7 41 41 H 1.09002 * 110.07415 * 267.99669 * 14 13 11 42 42 H 1.09004 * 110.07694 * 29.53536 * 14 13 11 43 43 H 1.08991 * 110.07755 * 250.75031 * 17 15 14 44 44 H 1.08999 * 110.07400 * 12.24156 * 17 15 14 45 45 H 0.96995 * 119.99584 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.08154 * 271.62049 * 27 18 17 47 47 H 1.08995 * 110.91922 * 149.50868 * 27 18 17 48 48 H 1.08994 * 109.46652 * 182.03986 * 29 28 27 49 49 H 1.08995 * 109.46475 * 302.04289 * 29 28 27 50 50 H 1.09003 * 109.47074 * 62.04385 * 29 28 27 51 51 H 1.08992 * 110.07928 * 330.46698 * 30 13 11 52 52 H 1.08998 * 110.07237 * 91.95556 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 0.4600 -0.1070 -3.2071 7 7 0.4702 0.7475 -4.1978 8 7 1.6647 1.4765 -4.1347 9 6 2.0800 2.5325 -5.0613 10 6 2.3656 1.0339 -3.0699 11 6 2.0324 -0.7104 1.2306 12 8 2.1513 -1.9174 1.2279 13 7 2.3495 -0.0044 2.3339 14 6 2.1733 1.4435 2.5328 15 6 1.9012 1.6419 4.0362 16 1 2.4007 2.5302 4.4228 17 6 0.3839 1.6612 4.2856 18 7 0.1361 0.7419 5.4085 19 6 -0.8545 0.8462 6.3482 20 1 -0.9368 0.1062 7.1304 21 6 -1.7528 1.9032 6.2954 22 7 -1.6526 2.8049 5.3418 23 14 -3.1036 2.0459 7.5778 24 1 -2.6117 2.8463 8.7278 25 1 -4.2861 2.7150 6.9785 26 1 -3.4867 0.6898 8.0461 27 6 1.1754 -0.3232 5.3396 28 6 2.4112 0.3481 4.7173 29 6 3.4890 0.6389 5.7636 30 6 2.9457 -0.5296 3.5732 31 1 -0.3633 0.6057 -0.8301 32 1 -0.3633 -1.0219 -0.1095 33 1 -0.3634 0.4161 0.9397 34 1 1.6053 -1.7198 -1.2951 35 1 3.1263 -0.7995 -1.2055 36 1 -0.3262 -0.8149 -2.9894 37 1 2.6422 2.0926 -5.8852 38 1 1.1982 3.0396 -5.4531 39 1 2.7085 3.2510 -4.5353 40 1 3.3318 1.3944 -2.7490 41 1 3.0795 1.9743 2.2409 42 1 1.3253 1.8010 1.9487 43 1 0.0606 2.6683 4.5482 44 1 -0.1457 1.3184 3.3966 45 1 -2.2801 3.5437 5.3052 46 1 0.8331 -1.1395 4.7037 47 1 1.4147 -0.6983 6.3346 48 1 4.3291 1.1455 5.2886 49 1 3.0746 1.2763 6.5446 50 1 3.8312 -0.2982 6.2029 51 1 2.6433 -1.5658 3.7240 52 1 4.0324 -0.4607 3.5241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092151158.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:52 Heat of formation + Delta-G solvation = 49.210118 kcal Electronic energy + Delta-G solvation = -31510.172302 eV Core-core repulsion = 27511.178095 eV Total energy + Delta-G solvation = -3998.994207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.17272 -41.59375 -39.80824 -36.53876 -36.11693 -34.45648 -33.73810 -32.50268 -31.59428 -31.28623 -28.43283 -27.93549 -27.59053 -26.66746 -26.59762 -24.47015 -23.26470 -21.98935 -21.90303 -21.00447 -20.32917 -19.55814 -18.74763 -18.24422 -17.41254 -16.92618 -16.73953 -16.56817 -16.11035 -15.74918 -15.51994 -15.35461 -15.17346 -14.96648 -14.68602 -14.34499 -14.20195 -13.85483 -13.75900 -13.54920 -13.44009 -13.34684 -13.26127 -13.24516 -13.00382 -12.94243 -12.85732 -12.71073 -12.65935 -12.29668 -12.13525 -12.00384 -12.00129 -11.80509 -11.52371 -11.43105 -11.41112 -11.12953 -10.79427 -10.67524 -10.30820 -9.61010 -9.24965 -8.90427 -7.73303 -5.20605 1.00012 1.46504 1.47837 1.56192 1.61665 1.74358 1.81193 2.15194 2.49142 3.31035 3.39304 3.53662 3.65152 3.79057 3.89335 3.94010 3.96842 4.10079 4.16097 4.27040 4.33728 4.37100 4.43436 4.46764 4.48137 4.52109 4.68135 4.71448 4.74149 4.74806 4.78237 4.78875 4.84051 4.90519 4.91694 4.95453 4.98537 5.10361 5.18309 5.20580 5.22708 5.25650 5.36063 5.39246 5.47190 5.56188 5.65482 5.72690 5.84705 6.20856 6.38330 6.61240 6.77907 7.12733 7.18354 7.77159 8.45460 9.24573 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.002770 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.729123 B =10104.095526 C =11277.249373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 H 0.106 0.894 4 C -0.009 4.009 5 C -0.245 4.245 6 C 0.045 3.955 7 N -0.337 5.337 8 N -0.382 5.382 9 C 0.093 3.907 10 C 0.066 3.934 11 C 0.532 3.468 12 O -0.586 6.586 13 N -0.614 5.614 14 C 0.115 3.885 15 C -0.107 4.107 16 H 0.104 0.896 17 C 0.153 3.847 18 N -0.620 5.620 19 C -0.234 4.234 20 H 0.076 0.924 21 C -0.064 4.064 22 N -0.944 5.944 23 Si 0.977 3.023 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.277 1.277 27 C 0.137 3.863 28 C -0.076 4.076 29 C -0.115 4.115 30 C 0.120 3.880 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.186 0.814 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.208 0.792 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.091 0.909 44 H -0.023 1.023 45 H 0.247 0.753 46 H 0.000 1.000 47 H 0.048 0.952 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.066 0.934 51 H 0.057 0.943 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.312 1.550 -16.481 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.108 4.108 3 H 0.124 0.876 4 C -0.048 4.048 5 C -0.256 4.256 6 C -0.140 4.140 7 N -0.160 5.160 8 N -0.164 5.164 9 C -0.047 4.047 10 C -0.080 4.080 11 C 0.322 3.678 12 O -0.466 6.466 13 N -0.346 5.346 14 C -0.008 4.008 15 C -0.127 4.127 16 H 0.122 0.878 17 C 0.028 3.972 18 N -0.344 5.344 19 C -0.363 4.363 20 H 0.094 0.906 21 C -0.257 4.257 22 N -0.594 5.594 23 Si 0.806 3.194 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.202 1.202 27 C 0.012 3.988 28 C -0.078 4.078 29 C -0.173 4.173 30 C -0.003 4.003 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.203 0.797 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.224 0.776 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.109 0.891 44 H -0.005 1.005 45 H 0.057 0.943 46 H 0.018 0.982 47 H 0.066 0.934 48 H 0.101 0.899 49 H 0.065 0.935 50 H 0.085 0.915 51 H 0.075 0.925 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.560 1.568 -17.640 22.926 hybrid contribution -1.109 -0.475 1.509 1.932 sum 13.451 1.092 -16.131 21.032 Atomic orbital electron populations 1.21633 0.93148 1.02312 1.01768 1.21245 0.97286 1.01000 0.91252 0.87578 1.19539 1.00825 0.96916 0.87531 1.19994 0.97693 1.05200 1.02752 1.24039 0.98870 0.98190 0.92945 1.77301 1.04040 1.10423 1.24202 1.48795 1.13972 1.30309 1.23292 1.22174 1.02101 0.87708 0.92689 1.22853 0.99546 0.96470 0.89172 1.20912 0.75873 0.86740 0.84268 1.90642 1.55964 1.15707 1.84314 1.48628 1.61479 1.10111 1.14370 1.22294 1.02608 0.80195 0.95700 1.23021 0.97361 0.97904 0.94428 0.87828 1.21712 0.90749 0.97455 0.87275 1.45225 1.32114 1.26819 1.30267 1.19427 1.05077 1.07300 1.04517 0.90639 1.25528 1.01716 0.97627 1.00813 1.69853 1.39099 1.15453 1.34959 0.85092 0.78413 0.77558 0.78344 1.20897 1.22046 1.20197 1.21919 0.88602 0.90663 0.97634 1.22061 0.95518 0.94815 0.95402 1.21597 0.96579 1.02036 0.97058 1.22075 0.98186 0.97382 0.82619 0.90192 0.92719 0.94519 0.91554 0.90364 0.79703 0.89588 0.89567 0.86661 0.77565 0.87762 0.90765 0.89100 1.00513 0.94273 0.98198 0.93401 0.89936 0.93486 0.91453 0.92480 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 8.74 71.98 0.63 -2.93 16 2 C -0.09 -2.11 2.13 -11.54 -0.02 -2.13 16 3 H 0.11 2.16 7.06 -2.39 -0.02 2.14 16 4 C -0.01 -0.19 4.75 29.85 0.14 -0.05 16 5 C -0.24 -4.84 4.78 -20.15 -0.10 -4.94 16 6 C 0.04 1.00 10.83 85.24 0.92 1.92 16 7 N -0.34 -8.06 12.58 -57.02 -0.72 -8.78 16 8 N -0.38 -6.67 4.01 -369.57 -1.48 -8.15 16 9 C 0.09 0.78 11.47 127.77 1.47 2.25 16 10 C 0.07 1.03 11.40 83.54 0.95 1.99 16 11 C 0.53 16.74 6.87 87.66 0.60 17.34 16 12 O -0.59 -22.53 16.58 -3.04 -0.05 -22.58 16 13 N -0.61 -18.43 3.32 -814.59 -2.70 -21.14 16 14 C 0.11 3.08 5.77 86.60 0.50 3.58 16 15 C -0.11 -3.59 3.68 -9.54 -0.04 -3.62 16 16 H 0.10 3.16 7.88 -2.39 -0.02 3.14 16 17 C 0.15 7.26 5.73 86.51 0.50 7.76 16 18 N -0.62 -32.00 3.43 -690.74 -2.37 -34.37 16 19 C -0.23 -13.22 10.33 84.03 0.87 -12.35 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 21 C -0.06 -3.63 5.49 84.86 0.47 -3.17 16 22 N -0.94 -55.05 10.08 21.65 0.22 -54.83 16 23 Si 0.98 45.75 29.55 68.60 2.03 47.77 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 C 0.14 5.82 6.51 86.17 0.56 6.38 16 28 C -0.08 -2.44 1.08 -51.02 -0.06 -2.49 16 29 C -0.12 -2.93 8.43 71.98 0.61 -2.32 16 30 C 0.12 3.54 5.99 86.51 0.52 4.06 16 31 H 0.08 1.95 6.82 -2.39 -0.02 1.93 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.63 8.02 -2.38 -0.02 1.61 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.19 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.07 2.10 6.74 -2.39 -0.02 2.08 16 43 H 0.09 4.91 5.45 -2.39 -0.01 4.90 16 44 H -0.02 -1.19 7.41 -2.39 -0.02 -1.21 16 45 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.00 0.01 7.38 -2.39 -0.02 -0.01 16 47 H 0.05 1.95 7.82 -2.39 -0.02 1.94 16 48 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.06 1.93 7.22 -2.39 -0.02 1.91 16 52 H 0.09 2.19 7.87 -2.39 -0.02 2.17 16 Total: -1.00 -77.01 408.17 4.34 -72.67 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.90 Total: 18.14 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 8.52 Total: 11.27 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -7.05 Total: -127.27 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -77.01 4.34 -72.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092151158.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.877 kcal (2) G-P(sol) polarization free energy of solvation -77.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds