Wall clock time and date at job start Wed Apr 1 2020 04:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47139 * 2 1 4 4 C 1.50701 * 109.46782 * 240.00066 * 2 1 3 5 5 O 1.21287 * 120.00035 * 240.00080 * 4 2 1 6 6 N 1.34776 * 120.00051 * 60.00125 * 4 2 1 7 7 C 1.46502 * 120.00233 * 179.97438 * 6 4 2 8 8 C 1.52994 * 109.47473 * 180.02562 * 7 6 4 9 9 H 1.09009 * 109.58277 * 55.16063 * 8 7 6 10 10 C 1.53190 * 109.58947 * 175.58353 * 8 7 6 11 11 C 1.53038 * 109.31361 * 174.42357 * 10 8 7 12 12 C 1.53048 * 109.53731 * 298.63865 * 11 10 8 13 13 C 1.53002 * 109.49476 * 181.31858 * 12 11 10 14 14 C 1.53007 * 109.49421 * 301.38154 * 12 11 10 15 15 C 1.52751 * 109.38484 * 61.23870 * 12 11 10 16 16 N 1.46923 * 109.58878 * 294.87755 * 8 7 6 17 17 C 1.36944 * 120.62628 * 6.57835 * 16 8 7 18 18 H 1.07995 * 120.00378 * 328.90277 * 17 16 8 19 19 C 1.38811 * 119.99440 * 148.91033 * 17 16 8 20 20 N 1.31619 * 119.99789 * 141.89023 * 19 17 16 21 21 Si 1.86800 * 120.00054 * 321.60468 * 19 17 16 22 22 H 1.48496 * 109.47563 * 276.40394 * 21 19 17 23 23 H 1.48497 * 109.47213 * 36.40523 * 21 19 17 24 24 H 1.48506 * 109.46981 * 156.40443 * 21 19 17 25 25 C 1.50694 * 109.46875 * 120.00284 * 2 1 3 26 26 C 1.38600 * 120.80285 * 59.72372 * 25 2 1 27 27 N 1.32340 * 119.10679 * 179.71688 * 26 25 2 28 28 C 1.31799 * 120.81365 * 0.56546 * 27 26 25 29 29 N 1.31800 * 121.75647 * 359.70098 * 28 27 26 30 30 C 1.32339 * 120.81696 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.46932 * 300.00116 * 1 2 3 32 32 H 1.09002 * 109.47074 * 59.99820 * 1 2 3 33 33 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99750 * 359.97438 * 6 4 2 35 35 H 1.08997 * 109.47023 * 59.99798 * 7 6 4 36 36 H 1.09004 * 109.46851 * 300.00657 * 7 6 4 37 37 H 1.09000 * 109.50027 * 294.37610 * 10 8 7 38 38 H 1.09005 * 109.49349 * 54.44232 * 10 8 7 39 39 H 1.08992 * 109.46049 * 58.65621 * 11 10 8 40 40 H 1.08996 * 109.46060 * 178.63361 * 11 10 8 41 41 H 1.08994 * 109.47049 * 59.99937 * 13 12 11 42 42 H 1.09003 * 109.46788 * 179.97438 * 13 12 11 43 43 H 1.08999 * 109.47056 * 299.99813 * 13 12 11 44 44 H 1.08997 * 109.47022 * 60.00089 * 14 12 11 45 45 H 1.08997 * 109.46446 * 180.02562 * 14 12 11 46 46 H 1.09004 * 109.47080 * 299.99831 * 14 12 11 47 47 H 1.09001 * 109.51124 * 185.70535 * 15 12 11 48 48 H 1.09002 * 109.43324 * 65.42384 * 15 12 11 49 49 H 0.96990 * 120.00170 * 359.71457 * 20 19 17 50 50 H 1.08005 * 120.44756 * 359.97438 * 26 25 2 51 51 H 1.08000 * 119.11928 * 179.73264 * 28 27 26 52 52 H 1.07991 * 120.44485 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6966 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1954 -0.9402 -3.6508 8 6 1.6859 -0.2186 -4.9000 9 1 1.9757 0.8314 -4.8592 10 6 2.2841 -0.8713 -6.1501 11 6 1.6647 -0.2375 -7.3978 12 6 0.1541 -0.4832 -7.4004 13 6 -0.4595 0.1224 -8.6645 14 6 -0.1184 -1.9885 -7.3711 15 6 -0.4678 0.1688 -6.1670 16 7 0.2219 -0.3232 -4.9665 17 6 -0.4859 -0.8741 -3.9317 18 1 -0.0424 -1.6517 -3.3276 19 6 -1.7737 -0.4332 -3.6594 20 7 -2.6982 -1.2922 -3.2858 21 14 -2.1924 1.3806 -3.8155 22 1 -1.8077 2.0867 -2.5671 23 1 -1.4503 1.9631 -4.9623 24 1 -3.6522 1.5340 -4.0412 25 6 2.0323 -0.7105 1.2304 26 6 1.7030 -2.0354 1.4690 27 7 2.1671 -2.6282 2.5574 28 6 2.9237 -1.9711 3.4136 29 7 3.2527 -0.7092 3.2222 30 6 2.8299 -0.0529 2.1537 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.1487 0.5386 -2.5435 35 1 1.8325 -1.9680 -3.6510 36 1 3.2855 -0.9399 -3.6506 37 1 3.3630 -0.7162 -6.1607 38 1 2.0703 -1.9402 -6.1401 39 1 1.8581 0.8351 -7.3942 40 1 2.1065 -0.6832 -8.2889 41 1 -0.0142 -0.3435 -9.5435 42 1 -1.5353 -0.0532 -8.6661 43 1 -0.2660 1.1949 -8.6843 44 1 0.3179 -2.4192 -6.4699 45 1 -1.1943 -2.1629 -7.3735 46 1 0.3270 -2.4556 -8.2495 47 1 -1.5253 -0.0897 -6.1126 48 1 -0.3571 1.2511 -6.2341 49 1 -2.4808 -2.2340 -3.2048 50 1 1.0794 -2.5781 0.7740 51 1 3.2841 -2.4804 4.2951 52 1 3.1034 0.9809 2.0027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099199790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:07 Heat of formation + Delta-G solvation = 22.330938 kcal Electronic energy + Delta-G solvation = -32324.162405 eV Core-core repulsion = 28324.002629 eV Total energy + Delta-G solvation = -4000.159776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.10818 -39.52568 -38.69558 -35.34371 -34.57111 -33.62389 -33.32940 -32.32983 -30.67222 -30.06056 -27.59001 -26.78054 -25.27789 -25.22298 -24.44495 -23.92580 -22.45860 -22.17613 -20.07607 -19.51091 -18.44797 -17.73805 -17.61055 -17.06995 -16.28426 -15.86079 -15.50529 -14.80469 -14.54489 -14.48678 -14.35751 -14.15418 -13.65824 -13.60984 -13.50521 -13.43308 -13.41242 -13.18370 -12.63077 -12.37102 -12.19037 -12.16137 -12.06847 -11.69760 -11.56860 -11.38919 -11.35615 -10.97816 -10.88076 -10.77346 -10.73108 -10.61614 -10.48466 -10.21252 -9.98784 -9.73917 -9.57346 -9.53525 -9.35110 -9.22129 -9.13384 -8.47537 -8.24298 -7.08205 -6.38817 -3.34096 0.93196 1.15430 3.01969 3.35586 3.44815 3.57690 3.60929 3.93229 4.15657 4.27521 4.52782 4.58571 4.67366 4.74742 4.82884 5.12275 5.19160 5.24044 5.26005 5.28234 5.38867 5.42507 5.52450 5.57026 5.69520 5.82534 5.83318 5.92349 5.94879 6.00781 6.04052 6.07359 6.13140 6.18080 6.27333 6.29329 6.32713 6.36430 6.42103 6.46339 6.48163 6.59629 6.70637 6.74952 6.82723 6.93875 6.98122 7.02212 7.10227 8.04724 8.07857 8.10703 8.37008 8.67977 8.96131 9.58757 10.20044 10.93871 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.003360 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.418013 B = 8331.019345 C = 9240.869595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 H 0.105 0.895 4 C 0.515 3.485 5 O -0.557 6.557 6 N -0.689 5.689 7 C 0.138 3.862 8 C 0.158 3.842 9 H 0.031 0.969 10 C -0.130 4.130 11 C -0.096 4.096 12 C -0.089 4.089 13 C -0.138 4.138 14 C -0.125 4.125 15 C 0.158 3.842 16 N -0.591 5.591 17 C -0.363 4.363 18 H 0.070 0.930 19 C 0.013 3.987 20 N -0.888 5.888 21 Si 1.005 2.995 22 H -0.296 1.296 23 H -0.273 1.273 24 H -0.295 1.295 25 C -0.160 4.160 26 C 0.183 3.817 27 N -0.520 5.520 28 C 0.282 3.718 29 N -0.524 5.524 30 C 0.148 3.852 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.408 0.592 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.033 0.967 47 H 0.065 0.935 48 H 0.025 0.975 49 H 0.268 0.732 50 H 0.165 0.835 51 H 0.192 0.808 52 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.978 5.090 0.698 9.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 H 0.123 0.877 4 C 0.300 3.700 5 O -0.436 6.436 6 N -0.338 5.338 7 C 0.014 3.986 8 C 0.052 3.948 9 H 0.048 0.952 10 C -0.170 4.170 11 C -0.133 4.133 12 C -0.091 4.091 13 C -0.195 4.195 14 C -0.182 4.182 15 C 0.032 3.968 16 N -0.315 5.315 17 C -0.491 4.491 18 H 0.087 0.913 19 C -0.193 4.193 20 N -0.524 5.524 21 Si 0.834 3.166 22 H -0.224 1.224 23 H -0.199 1.199 24 H -0.222 1.222 25 C -0.165 4.165 26 C 0.018 3.982 27 N -0.234 5.234 28 C -0.006 4.006 29 N -0.238 5.238 30 C -0.017 4.017 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.244 0.756 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.052 0.948 47 H 0.084 0.916 48 H 0.042 0.958 49 H 0.078 0.922 50 H 0.182 0.818 51 H 0.209 0.791 52 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.569 4.979 1.781 9.233 hybrid contribution 0.562 -0.208 -1.088 1.242 sum 8.131 4.771 0.693 9.453 Atomic orbital electron populations 1.21812 0.90625 1.03891 1.03522 1.20160 0.98574 0.99826 0.90010 0.87705 1.20177 0.80439 0.84747 0.84642 1.90679 1.39290 1.26737 1.86933 1.45782 1.51539 1.31835 1.04630 1.21257 0.96295 0.97449 0.83574 1.20770 0.86520 0.95953 0.91586 0.95154 1.21982 0.98157 1.01107 0.95711 1.21406 0.95213 0.99769 0.96933 1.21045 0.95101 0.96686 0.96234 1.21811 1.00599 1.00065 0.97074 1.21703 1.00939 0.94764 1.00779 1.21282 0.96125 0.94907 0.84455 1.44329 0.99619 1.72368 1.15197 1.19937 0.99225 1.17728 1.12187 0.91266 1.25970 0.91869 1.04258 0.97189 1.70920 1.31903 1.04100 1.45497 0.84679 0.75922 0.79038 0.76940 1.22371 1.19890 1.22159 1.21189 1.00412 0.97030 0.97821 1.23053 0.92368 0.90992 0.91835 1.68457 1.11500 1.39334 1.04074 1.24904 0.90798 0.87635 0.97291 1.68391 1.23119 1.10531 1.21741 1.23059 0.90388 0.99954 0.88343 0.91860 0.89987 0.91548 0.75616 0.91266 0.92845 0.92999 0.91455 0.92860 0.93258 0.93481 0.92904 0.93260 0.91366 0.93467 0.94815 0.91648 0.95766 0.92170 0.81802 0.79097 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.91 37.16 0.33 -1.67 16 2 C -0.06 -0.85 2.93 -92.92 -0.27 -1.12 16 3 H 0.10 1.11 7.95 -51.93 -0.41 0.69 16 4 C 0.52 8.64 7.04 -10.99 -0.08 8.56 16 5 O -0.56 -11.13 15.18 5.55 0.08 -11.05 16 6 N -0.69 -11.50 3.97 -60.29 -0.24 -11.74 16 7 C 0.14 2.38 4.40 -4.04 -0.02 2.36 16 8 C 0.16 2.67 2.96 -67.60 -0.20 2.47 16 9 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 10 C -0.13 -1.95 5.03 -26.61 -0.13 -2.09 16 11 C -0.10 -1.38 4.71 -26.69 -0.13 -1.51 16 12 C -0.09 -1.42 0.77 -154.61 -0.12 -1.54 16 13 C -0.14 -1.91 8.48 37.16 0.32 -1.59 16 14 C -0.12 -2.09 7.98 37.16 0.30 -1.79 16 15 C 0.16 3.02 3.10 -3.94 -0.01 3.01 16 16 N -0.59 -11.63 2.10 -165.04 -0.35 -11.97 16 17 C -0.36 -8.25 7.38 -15.06 -0.11 -8.36 16 18 H 0.07 1.76 6.07 -52.49 -0.32 1.44 16 19 C 0.01 0.32 4.72 -17.43 -0.08 0.24 16 20 N -0.89 -24.14 13.71 55.49 0.76 -23.38 16 21 Si 1.00 22.00 27.38 -169.99 -4.65 17.34 16 22 H -0.30 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.59 5.02 56.52 0.28 -5.30 16 24 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 25 C -0.16 -2.24 4.40 -104.36 -0.46 -2.69 16 26 C 0.18 2.84 9.28 -17.20 -0.16 2.68 16 27 N -0.52 -7.93 10.44 -14.58 -0.15 -8.08 16 28 C 0.28 3.72 12.29 -92.14 -1.13 2.59 16 29 N -0.52 -7.08 10.44 -14.58 -0.15 -7.23 16 30 C 0.15 1.87 10.96 -17.20 -0.19 1.68 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.30 7.56 -51.93 -0.39 0.90 16 33 H 0.07 1.05 7.46 -51.93 -0.39 0.66 16 34 H 0.41 6.73 7.22 -40.82 -0.29 6.43 16 35 H 0.07 1.39 7.11 -51.93 -0.37 1.02 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.28 5.98 -51.93 -0.31 0.97 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 1.41 6.28 -51.93 -0.33 1.08 16 48 H 0.02 0.47 6.72 -51.93 -0.35 0.12 16 49 H 0.27 7.42 8.73 -40.82 -0.36 7.06 16 50 H 0.16 2.62 7.64 -52.48 -0.40 2.22 16 51 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 52 H 0.16 1.53 8.01 -52.49 -0.42 1.11 16 LS Contribution 398.46 15.07 6.00 6.00 Total: -1.00 -28.27 398.46 -9.50 -37.77 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -8.65 Total: 11.12 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.15 Total: 1.22 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.13 Total: -62.41 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.65 Total: 17.34 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.27 -9.50 -37.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099199790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.100 kcal (2) G-P(sol) polarization free energy of solvation -28.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds