Wall clock time and date at job start Wed Apr 1 2020 04:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47139 * 2 1 4 4 C 1.50701 * 109.46782 * 240.00066 * 2 1 3 5 5 O 1.21287 * 120.00035 * 240.00080 * 4 2 1 6 6 N 1.34776 * 120.00051 * 60.00125 * 4 2 1 7 7 C 1.46502 * 120.00233 * 179.97438 * 6 4 2 8 8 C 1.52994 * 109.47473 * 180.02562 * 7 6 4 9 9 H 1.09009 * 109.58277 * 55.16063 * 8 7 6 10 10 C 1.53190 * 109.58947 * 175.58353 * 8 7 6 11 11 C 1.53038 * 109.31361 * 174.42357 * 10 8 7 12 12 C 1.53048 * 109.53731 * 298.63865 * 11 10 8 13 13 C 1.53002 * 109.49476 * 181.31858 * 12 11 10 14 14 C 1.53007 * 109.49421 * 301.38154 * 12 11 10 15 15 C 1.52751 * 109.38484 * 61.23870 * 12 11 10 16 16 N 1.46923 * 109.58878 * 294.87755 * 8 7 6 17 17 C 1.36944 * 120.62628 * 6.57835 * 16 8 7 18 18 H 1.07995 * 120.00378 * 328.90277 * 17 16 8 19 19 C 1.38811 * 119.99440 * 148.91033 * 17 16 8 20 20 N 1.31619 * 119.99789 * 141.89023 * 19 17 16 21 21 Si 1.86800 * 120.00054 * 321.60468 * 19 17 16 22 22 H 1.48496 * 109.47563 * 276.40394 * 21 19 17 23 23 H 1.48497 * 109.47213 * 36.40523 * 21 19 17 24 24 H 1.48506 * 109.46981 * 156.40443 * 21 19 17 25 25 C 1.50694 * 109.46875 * 120.00284 * 2 1 3 26 26 C 1.38600 * 120.80285 * 59.72372 * 25 2 1 27 27 N 1.32340 * 119.10679 * 179.71688 * 26 25 2 28 28 C 1.31799 * 120.81365 * 0.56546 * 27 26 25 29 29 N 1.31800 * 121.75647 * 359.70098 * 28 27 26 30 30 C 1.32339 * 120.81696 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.46932 * 300.00116 * 1 2 3 32 32 H 1.09002 * 109.47074 * 59.99820 * 1 2 3 33 33 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99750 * 359.97438 * 6 4 2 35 35 H 1.08997 * 109.47023 * 59.99798 * 7 6 4 36 36 H 1.09004 * 109.46851 * 300.00657 * 7 6 4 37 37 H 1.09000 * 109.50027 * 294.37610 * 10 8 7 38 38 H 1.09005 * 109.49349 * 54.44232 * 10 8 7 39 39 H 1.08992 * 109.46049 * 58.65621 * 11 10 8 40 40 H 1.08996 * 109.46060 * 178.63361 * 11 10 8 41 41 H 1.08994 * 109.47049 * 59.99937 * 13 12 11 42 42 H 1.09003 * 109.46788 * 179.97438 * 13 12 11 43 43 H 1.08999 * 109.47056 * 299.99813 * 13 12 11 44 44 H 1.08997 * 109.47022 * 60.00089 * 14 12 11 45 45 H 1.08997 * 109.46446 * 180.02562 * 14 12 11 46 46 H 1.09004 * 109.47080 * 299.99831 * 14 12 11 47 47 H 1.09001 * 109.51124 * 185.70535 * 15 12 11 48 48 H 1.09002 * 109.43324 * 65.42384 * 15 12 11 49 49 H 0.96990 * 120.00170 * 359.71457 * 20 19 17 50 50 H 1.08005 * 120.44756 * 359.97438 * 26 25 2 51 51 H 1.08000 * 119.11928 * 179.73264 * 28 27 26 52 52 H 1.07991 * 120.44485 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6966 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1954 -0.9402 -3.6508 8 6 1.6859 -0.2186 -4.9000 9 1 1.9757 0.8314 -4.8592 10 6 2.2841 -0.8713 -6.1501 11 6 1.6647 -0.2375 -7.3978 12 6 0.1541 -0.4832 -7.4004 13 6 -0.4595 0.1224 -8.6645 14 6 -0.1184 -1.9885 -7.3711 15 6 -0.4678 0.1688 -6.1670 16 7 0.2219 -0.3232 -4.9665 17 6 -0.4859 -0.8741 -3.9317 18 1 -0.0424 -1.6517 -3.3276 19 6 -1.7737 -0.4332 -3.6594 20 7 -2.6982 -1.2922 -3.2858 21 14 -2.1924 1.3806 -3.8155 22 1 -1.8077 2.0867 -2.5671 23 1 -1.4503 1.9631 -4.9623 24 1 -3.6522 1.5340 -4.0412 25 6 2.0323 -0.7105 1.2304 26 6 1.7030 -2.0354 1.4690 27 7 2.1671 -2.6282 2.5574 28 6 2.9237 -1.9711 3.4136 29 7 3.2527 -0.7092 3.2222 30 6 2.8299 -0.0529 2.1537 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.1487 0.5386 -2.5435 35 1 1.8325 -1.9680 -3.6510 36 1 3.2855 -0.9399 -3.6506 37 1 3.3630 -0.7162 -6.1607 38 1 2.0703 -1.9402 -6.1401 39 1 1.8581 0.8351 -7.3942 40 1 2.1065 -0.6832 -8.2889 41 1 -0.0142 -0.3435 -9.5435 42 1 -1.5353 -0.0532 -8.6661 43 1 -0.2660 1.1949 -8.6843 44 1 0.3179 -2.4192 -6.4699 45 1 -1.1943 -2.1629 -7.3735 46 1 0.3270 -2.4556 -8.2495 47 1 -1.5253 -0.0897 -6.1126 48 1 -0.3571 1.2511 -6.2341 49 1 -2.4808 -2.2340 -3.2048 50 1 1.0794 -2.5781 0.7740 51 1 3.2841 -2.4804 4.2951 52 1 3.1034 0.9809 2.0027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099199790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:05 Heat of formation + Delta-G solvation = 6.419530 kcal Electronic energy + Delta-G solvation = -32324.852375 eV Core-core repulsion = 28324.002629 eV Total energy + Delta-G solvation = -4000.849746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.20789 -40.89521 -40.06259 -36.72662 -35.80236 -35.02243 -34.69482 -33.74348 -32.30865 -31.18445 -28.89071 -28.08963 -26.93222 -26.38244 -25.54196 -25.22190 -23.98088 -23.38495 -21.57833 -20.84865 -19.96909 -18.95914 -18.65466 -18.53825 -17.60346 -17.19659 -16.99077 -16.24128 -15.85758 -15.79337 -15.67456 -15.44489 -15.14356 -14.85207 -14.75575 -14.66844 -14.59511 -14.51897 -14.07045 -13.82342 -13.59352 -13.51462 -13.27418 -13.10905 -12.81018 -12.63225 -12.60931 -12.47320 -12.33113 -12.20184 -12.02168 -11.82781 -11.79236 -11.67435 -11.41648 -11.20789 -11.04630 -10.96131 -10.80154 -10.39831 -10.24647 -10.15035 -9.88406 -8.87419 -8.29409 -5.23411 -0.12927 0.06910 1.59759 1.63118 1.67143 1.80823 2.34522 2.71846 2.82124 3.07745 3.18694 3.23839 3.48561 3.50773 3.62437 3.70864 3.93123 3.95940 3.98819 4.10088 4.15755 4.27543 4.36180 4.37777 4.47559 4.50055 4.60897 4.70053 4.74087 4.78304 4.79212 4.86628 4.88324 4.96518 5.00081 5.03659 5.08363 5.12055 5.14895 5.21427 5.24012 5.29564 5.39482 5.45414 5.48509 5.57537 5.63629 5.75500 5.92025 6.14401 6.43703 6.68846 7.04855 7.08832 7.32611 7.81810 8.36063 8.97257 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.003360 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.418013 B = 8331.019345 C = 9240.869595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 H 0.148 0.852 4 C 0.511 3.489 5 O -0.593 6.593 6 N -0.688 5.688 7 C 0.144 3.856 8 C 0.160 3.840 9 H 0.052 0.948 10 C -0.127 4.127 11 C -0.090 4.090 12 C -0.088 4.088 13 C -0.133 4.133 14 C -0.118 4.118 15 C 0.156 3.844 16 N -0.600 5.600 17 C -0.321 4.321 18 H 0.034 0.966 19 C -0.033 4.033 20 N -0.934 5.934 21 Si 1.043 2.957 22 H -0.276 1.276 23 H -0.246 1.246 24 H -0.320 1.320 25 C -0.168 4.168 26 C 0.163 3.837 27 N -0.544 5.544 28 C 0.280 3.720 29 N -0.530 5.530 30 C 0.158 3.842 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.410 0.590 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.062 0.938 44 H 0.039 0.961 45 H 0.025 0.975 46 H 0.057 0.943 47 H 0.033 0.967 48 H 0.034 0.966 49 H 0.247 0.753 50 H 0.142 0.858 51 H 0.224 0.776 52 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.582 8.419 -0.194 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.072 4.072 3 H 0.166 0.834 4 C 0.298 3.702 5 O -0.475 6.475 6 N -0.336 5.336 7 C 0.020 3.980 8 C 0.054 3.946 9 H 0.070 0.930 10 C -0.166 4.166 11 C -0.127 4.127 12 C -0.089 4.089 13 C -0.191 4.191 14 C -0.175 4.175 15 C 0.031 3.969 16 N -0.325 5.325 17 C -0.450 4.450 18 H 0.051 0.949 19 C -0.232 4.232 20 N -0.574 5.574 21 Si 0.870 3.130 22 H -0.203 1.203 23 H -0.170 1.170 24 H -0.249 1.249 25 C -0.172 4.172 26 C -0.002 4.002 27 N -0.258 5.258 28 C -0.007 4.007 29 N -0.244 5.244 30 C -0.008 4.008 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.247 0.753 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.044 0.956 46 H 0.076 0.924 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.160 0.840 51 H 0.240 0.760 52 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 10.213 8.334 0.861 13.210 hybrid contribution -0.161 -1.362 -0.819 1.598 sum 10.052 6.972 0.042 12.233 Atomic orbital electron populations 1.21721 0.91363 1.02145 1.03894 1.20137 0.97631 1.01465 0.87988 0.83429 1.20797 0.79639 0.84281 0.85518 1.90660 1.41049 1.28306 1.87470 1.45785 1.51412 1.31711 1.04703 1.21154 0.97000 0.95470 0.84361 1.20932 0.84304 0.97070 0.92301 0.93016 1.21948 0.99788 0.99835 0.95038 1.21391 0.93329 1.00793 0.97232 1.21007 0.96694 0.95435 0.95803 1.21764 1.00030 1.00931 0.96352 1.21627 0.99436 0.95995 1.00473 1.21290 0.94636 0.95523 0.85499 1.44380 1.01023 1.72323 1.14782 1.19580 0.98614 1.15312 1.11480 0.94854 1.26760 0.92291 1.06455 0.97699 1.71060 1.33070 1.03153 1.50131 0.84191 0.74441 0.75623 0.78705 1.20271 1.17044 1.24853 1.21210 1.01180 0.96393 0.98427 1.22918 0.93054 0.92105 0.92140 1.68443 1.12611 1.40194 1.04542 1.25568 0.89745 0.87859 0.97567 1.68513 1.23240 1.10556 1.22052 1.23679 0.88627 1.01350 0.87112 0.89335 0.91540 0.94459 0.75307 0.95284 0.91319 0.90225 0.93298 0.91346 0.91024 0.91437 0.93795 0.91863 0.94207 0.95566 0.92373 0.94848 0.94794 0.94409 0.84015 0.75981 0.77834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 8.91 71.98 0.64 -3.16 16 2 C -0.05 -1.28 2.93 -12.29 -0.04 -1.32 16 3 H 0.15 2.55 7.95 -2.39 -0.02 2.53 16 4 C 0.51 17.24 7.04 87.66 0.62 17.85 16 5 O -0.59 -24.40 15.18 -3.05 -0.05 -24.45 16 6 N -0.69 -22.86 3.97 -463.06 -1.84 -24.70 16 7 C 0.14 4.98 4.40 86.38 0.38 5.36 16 8 C 0.16 5.11 2.96 44.97 0.13 5.25 16 9 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 10 C -0.13 -3.48 5.03 30.67 0.15 -3.33 16 11 C -0.09 -2.24 4.71 30.62 0.14 -2.10 16 12 C -0.09 -2.62 0.77 -52.24 -0.04 -2.66 16 13 C -0.13 -3.27 8.48 71.98 0.61 -2.66 16 14 C -0.12 -3.92 7.98 71.98 0.57 -3.35 16 15 C 0.16 5.76 3.10 86.22 0.27 6.03 16 16 N -0.60 -23.45 2.10 -676.08 -1.42 -24.87 16 17 C -0.32 -15.15 7.38 84.03 0.62 -14.53 16 18 H 0.03 1.83 6.07 -2.91 -0.02 1.81 16 19 C -0.03 -1.67 4.72 84.86 0.40 -1.27 16 20 N -0.93 -54.05 13.71 21.65 0.30 -53.75 16 21 Si 1.04 44.84 27.38 68.60 1.88 46.72 16 22 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.25 -9.36 5.02 99.48 0.50 -8.86 16 24 H -0.32 -15.15 7.11 99.48 0.71 -14.44 16 25 C -0.17 -4.53 4.40 -19.69 -0.09 -4.61 16 26 C 0.16 5.23 9.28 84.70 0.79 6.02 16 27 N -0.54 -16.80 10.44 -200.03 -2.09 -18.89 16 28 C 0.28 7.05 12.29 180.88 2.22 9.27 16 29 N -0.53 -13.10 10.44 -200.04 -2.09 -15.19 16 30 C 0.16 3.55 10.96 84.70 0.93 4.48 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 2.09 7.56 -2.39 -0.02 2.07 16 33 H 0.04 1.25 7.46 -2.39 -0.02 1.24 16 34 H 0.41 13.12 7.22 -92.71 -0.67 12.45 16 35 H 0.03 1.23 7.11 -2.39 -0.02 1.21 16 36 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 1.54 6.34 -2.38 -0.02 1.52 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.04 1.53 5.98 -2.39 -0.01 1.51 16 45 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.03 1.45 6.28 -2.39 -0.01 1.43 16 48 H 0.03 1.21 6.72 -2.39 -0.02 1.19 16 49 H 0.25 14.85 8.73 -92.72 -0.81 14.04 16 50 H 0.14 5.03 7.64 -2.91 -0.02 5.01 16 51 H 0.22 3.84 8.06 -2.91 -0.02 3.81 16 52 H 0.21 2.82 8.01 -2.92 -0.02 2.80 16 Total: -1.00 -66.79 398.46 3.01 -63.78 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.00 Total: 36.07 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 8.32 Total: 15.27 kcal Atomic # 7 Polarization: -130.25 SS G_CDS: -7.14 Total: -137.39 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -66.79 3.01 -63.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099199790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.201 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds