Wall clock time and date at job start Wed Apr 1 2020 04:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47160 * 2 1 4 4 C 1.50703 * 109.47345 * 119.99515 * 2 1 3 5 5 O 1.21279 * 119.99783 * 119.99758 * 4 2 1 6 6 N 1.34777 * 120.00155 * 300.00605 * 4 2 1 7 7 C 1.46498 * 120.00006 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47315 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.70108 * 60.41890 * 8 7 6 10 10 C 1.53618 * 109.66701 * 181.01032 * 8 7 6 11 11 C 1.53037 * 109.24254 * 174.55282 * 10 8 7 12 12 C 1.53045 * 109.53459 * 298.50755 * 11 10 8 13 13 C 1.52999 * 109.49950 * 301.41496 * 12 11 10 14 14 C 1.53006 * 109.49382 * 181.31540 * 12 11 10 15 15 C 1.53191 * 109.31126 * 61.36856 * 12 11 10 16 16 N 1.46924 * 109.58612 * 300.06639 * 8 7 6 17 17 C 1.36933 * 120.63195 * 6.62216 * 16 8 7 18 18 H 1.08007 * 119.99874 * 304.59575 * 17 16 8 19 19 C 1.38817 * 120.00152 * 124.59219 * 17 16 8 20 20 N 1.31615 * 120.00029 * 156.27198 * 19 17 16 21 21 Si 1.86802 * 119.99590 * 335.99354 * 19 17 16 22 22 H 1.48494 * 109.47127 * 275.95026 * 21 19 17 23 23 H 1.48499 * 109.47170 * 35.95542 * 21 19 17 24 24 H 1.48504 * 109.46655 * 155.95545 * 21 19 17 25 25 C 1.50696 * 109.47428 * 240.00064 * 2 1 3 26 26 C 1.38608 * 120.79674 * 299.72385 * 25 2 1 27 27 N 1.32329 * 119.10483 * 179.71720 * 26 25 2 28 28 C 1.31800 * 120.81486 * 0.56563 * 27 26 25 29 29 N 1.31794 * 121.75463 * 359.70602 * 28 27 26 30 30 C 1.32332 * 120.82000 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47268 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47266 * 300.00048 * 1 2 3 33 33 H 1.08993 * 109.47308 * 60.00091 * 1 2 3 34 34 H 0.97005 * 119.99677 * 359.97438 * 6 4 2 35 35 H 1.09003 * 109.47045 * 59.99668 * 7 6 4 36 36 H 1.09000 * 109.47016 * 299.99789 * 7 6 4 37 37 H 1.08995 * 109.63452 * 54.55631 * 10 8 7 38 38 H 1.09004 * 109.45921 * 294.43356 * 10 8 7 39 39 H 1.09005 * 109.46227 * 178.48984 * 11 10 8 40 40 H 1.08994 * 109.46372 * 58.53120 * 11 10 8 41 41 H 1.09000 * 109.46653 * 179.83958 * 13 12 11 42 42 H 1.08997 * 109.47105 * 299.83903 * 13 12 11 43 43 H 1.08997 * 109.46713 * 59.83711 * 13 12 11 44 44 H 1.08995 * 109.47579 * 300.16638 * 14 12 11 45 45 H 1.09000 * 109.46783 * 60.17080 * 14 12 11 46 46 H 1.08999 * 109.46584 * 180.16398 * 14 12 11 47 47 H 1.09000 * 109.58753 * 185.57597 * 15 12 11 48 48 H 1.09001 * 109.70092 * 65.21775 * 15 12 11 49 49 H 0.97003 * 119.99981 * 359.71323 * 20 19 17 50 50 H 1.08001 * 120.44749 * 359.97438 * 26 25 2 51 51 H 1.07997 * 119.12358 * 179.72590 * 28 27 26 52 52 H 1.08000 * 120.44689 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1946 -0.9407 3.6508 8 6 1.6852 -0.2190 4.9001 9 1 0.5952 -0.2226 4.9077 10 6 2.2151 -0.9251 6.1572 11 6 1.8141 -0.1195 7.3950 12 6 2.4429 1.2740 7.3245 13 6 3.9649 1.1437 7.2376 14 6 2.0683 2.0673 8.5781 15 6 1.9204 2.0033 6.0828 16 7 2.1732 1.1668 4.9017 17 6 2.8458 1.6709 3.8208 18 1 3.7273 1.1682 3.4507 19 6 2.3949 2.8280 3.2005 20 7 3.2300 3.5701 2.5047 21 14 0.6009 3.3277 3.3469 22 1 -0.1977 2.6120 2.3198 23 1 0.0978 2.9759 4.6991 24 1 0.4766 4.7928 3.1382 25 6 2.0323 -0.7104 -1.2304 26 6 1.7124 -2.0387 -1.4633 27 7 2.1669 -2.6280 -2.5575 28 6 2.9235 -1.9709 -3.4136 29 7 3.2525 -0.7091 -3.2222 30 6 2.8305 -0.0531 -2.1533 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.1492 0.5390 2.5436 35 1 3.2847 -0.9411 3.6509 36 1 1.8310 -1.9682 3.6507 37 1 3.3015 -0.9973 6.1063 38 1 1.7866 -1.9255 6.2197 39 1 2.1653 -0.6314 8.2910 40 1 0.7287 -0.0267 7.4320 41 1 4.4120 2.1364 7.1846 42 1 4.3361 0.6247 8.1213 43 1 4.2306 0.5772 6.3452 44 1 0.9839 2.1583 8.6400 45 1 2.4403 1.5480 9.4613 46 1 2.5140 3.0606 8.5261 47 1 2.4387 2.9560 5.9735 48 1 0.8495 2.1793 6.1835 49 1 4.1616 3.3106 2.4288 50 1 1.0969 -2.5843 -0.7633 51 1 3.2833 -2.4799 -4.2956 52 1 3.1034 0.9810 -2.0027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099199792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:18 Heat of formation + Delta-G solvation = 13.655664 kcal Electronic energy + Delta-G solvation = -32398.357848 eV Core-core repulsion = 28397.821884 eV Total energy + Delta-G solvation = -4000.535964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.04606 -39.44873 -38.63029 -35.32883 -34.52110 -33.56435 -33.21290 -32.29711 -30.76775 -30.05990 -27.55609 -26.82144 -25.36150 -25.22073 -24.39545 -23.84655 -22.30118 -22.12284 -20.18630 -19.40950 -18.43819 -17.66173 -17.54923 -17.14595 -16.28828 -15.77698 -15.39153 -14.72565 -14.61440 -14.39669 -14.31234 -14.04098 -13.72989 -13.60075 -13.51740 -13.45007 -13.44292 -13.00202 -12.82742 -12.53541 -12.26536 -12.21746 -12.08008 -11.74174 -11.62697 -11.37720 -11.36066 -11.06458 -10.86293 -10.77264 -10.67876 -10.65457 -10.48484 -10.26660 -9.95353 -9.74200 -9.68225 -9.49143 -9.29898 -9.15780 -9.06262 -8.55983 -8.25882 -7.01017 -6.17444 -3.77885 0.99434 1.21231 3.13797 3.20321 3.35316 3.50083 3.69921 3.99184 4.22109 4.33406 4.39779 4.64239 4.74758 4.83562 4.90310 5.09276 5.19066 5.24173 5.28523 5.31404 5.34243 5.43053 5.56903 5.59741 5.70999 5.74993 5.82708 5.83990 5.93976 5.98497 6.03888 6.04508 6.13215 6.17786 6.19520 6.27824 6.28442 6.31125 6.35294 6.48351 6.49739 6.57894 6.70966 6.72560 6.82424 6.92053 7.04115 7.05814 7.13551 8.14847 8.15992 8.18331 8.47529 8.79661 8.90796 9.39870 10.16709 10.86565 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.003425 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.340259 B = 8172.913808 C = 8961.911093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 H 0.116 0.884 4 C 0.515 3.485 5 O -0.561 6.561 6 N -0.682 5.682 7 C 0.142 3.858 8 C 0.151 3.849 9 H 0.032 0.968 10 C -0.129 4.129 11 C -0.096 4.096 12 C -0.087 4.087 13 C -0.125 4.125 14 C -0.137 4.137 15 C 0.153 3.847 16 N -0.594 5.594 17 C -0.347 4.347 18 H 0.052 0.948 19 C 0.014 3.986 20 N -0.898 5.898 21 Si 1.019 2.981 22 H -0.290 1.290 23 H -0.270 1.270 24 H -0.291 1.291 25 C -0.158 4.158 26 C 0.179 3.821 27 N -0.524 5.524 28 C 0.281 3.719 29 N -0.522 5.522 30 C 0.153 3.847 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.408 0.592 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.034 0.966 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.046 0.954 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.026 0.974 49 H 0.269 0.731 50 H 0.162 0.838 51 H 0.192 0.808 52 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 -5.968 0.988 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 H 0.134 0.866 4 C 0.300 3.700 5 O -0.441 6.441 6 N -0.332 5.332 7 C 0.018 3.982 8 C 0.045 3.955 9 H 0.050 0.950 10 C -0.169 4.169 11 C -0.134 4.134 12 C -0.089 4.089 13 C -0.182 4.182 14 C -0.195 4.195 15 C 0.028 3.972 16 N -0.319 5.319 17 C -0.476 4.476 18 H 0.069 0.931 19 C -0.193 4.193 20 N -0.533 5.533 21 Si 0.848 3.152 22 H -0.217 1.217 23 H -0.196 1.196 24 H -0.218 1.218 25 C -0.162 4.162 26 C 0.013 3.987 27 N -0.237 5.237 28 C -0.007 4.007 29 N -0.235 5.235 30 C -0.012 4.012 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.245 0.755 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.044 0.956 49 H 0.079 0.921 50 H 0.179 0.821 51 H 0.209 0.791 52 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.715 -5.964 -0.378 8.989 hybrid contribution 0.720 -0.159 1.411 1.592 sum -5.995 -6.123 1.033 8.631 Atomic orbital electron populations 1.21813 0.91989 1.02677 1.03441 1.20172 0.97665 1.01149 0.90121 0.86643 1.20111 0.80740 0.84438 0.84670 1.90656 1.39168 1.27330 1.86979 1.45864 1.51844 1.31050 1.04455 1.21163 0.99727 0.93578 0.83730 1.21037 0.95548 0.87270 0.91634 0.94995 1.22050 1.01582 0.97556 0.95704 1.21408 0.99589 0.95407 0.96951 1.21088 0.96184 0.95444 0.96201 1.21701 0.94570 1.01200 1.00741 1.21814 1.00685 0.99904 0.97137 1.21420 0.96900 0.93904 0.84979 1.44283 1.65742 1.07487 1.14421 1.19778 1.08009 1.11489 1.08360 0.93090 1.26574 1.04578 0.93877 0.94230 1.70884 1.05661 1.35274 1.41494 0.84368 0.77132 0.76509 0.77148 1.21713 1.19586 1.21759 1.21176 1.00460 0.96892 0.97706 1.22940 0.92876 0.90912 0.91953 1.68419 1.11850 1.39380 1.04055 1.24888 0.90774 0.87730 0.97336 1.68413 1.22913 1.10415 1.21796 1.23183 0.89721 1.00297 0.88017 0.91994 0.91033 0.91325 0.75475 0.91731 0.92806 0.91542 0.93002 0.93264 0.92811 0.93541 0.94725 0.91490 0.93228 0.93512 0.92951 0.91906 0.95610 0.92080 0.82062 0.79136 0.81449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.91 37.15 0.33 -1.43 16 2 C -0.07 -1.04 2.93 -92.93 -0.27 -1.31 16 3 H 0.12 1.83 7.95 -51.93 -0.41 1.42 16 4 C 0.52 9.43 7.04 -10.98 -0.08 9.36 16 5 O -0.56 -11.76 15.14 5.56 0.08 -11.67 16 6 N -0.68 -12.57 4.05 -60.29 -0.24 -12.81 16 7 C 0.14 2.57 4.55 -4.04 -0.02 2.55 16 8 C 0.15 2.63 3.03 -67.38 -0.20 2.43 16 9 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 10 C -0.13 -1.96 5.05 -26.39 -0.13 -2.10 16 11 C -0.10 -1.38 4.71 -26.69 -0.13 -1.51 16 12 C -0.09 -1.38 0.77 -154.38 -0.12 -1.49 16 13 C -0.12 -2.04 7.99 37.16 0.30 -1.74 16 14 C -0.14 -1.86 8.48 37.16 0.32 -1.54 16 15 C 0.15 2.90 3.39 -3.71 -0.01 2.89 16 16 N -0.59 -11.88 1.59 -164.52 -0.26 -12.14 16 17 C -0.35 -8.09 6.24 -15.06 -0.09 -8.18 16 18 H 0.05 1.39 7.40 -52.48 -0.39 1.00 16 19 C 0.01 0.34 5.03 -17.43 -0.09 0.25 16 20 N -0.90 -24.23 13.71 55.49 0.76 -23.47 16 21 Si 1.02 21.78 26.71 -169.99 -4.54 17.24 16 22 H -0.29 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.27 -5.45 5.10 56.52 0.29 -5.16 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.16 -2.38 4.40 -104.36 -0.46 -2.84 16 26 C 0.18 2.69 9.26 -17.20 -0.16 2.54 16 27 N -0.52 -7.86 10.44 -14.58 -0.15 -8.01 16 28 C 0.28 3.86 12.29 -92.15 -1.13 2.73 16 29 N -0.52 -7.78 10.44 -14.58 -0.15 -7.93 16 30 C 0.15 2.26 10.96 -17.21 -0.19 2.07 16 31 H 0.06 0.69 7.50 -51.93 -0.39 0.30 16 32 H 0.07 0.92 7.57 -51.93 -0.39 0.53 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.41 7.68 5.18 -40.82 -0.21 7.47 16 35 H 0.06 1.33 7.56 -51.93 -0.39 0.94 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.08 6.33 -51.93 -0.33 0.75 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.24 5.97 -51.93 -0.31 0.93 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 1.32 7.75 -51.93 -0.40 0.92 16 48 H 0.03 0.50 6.56 -51.93 -0.34 0.15 16 49 H 0.27 7.43 8.73 -40.82 -0.36 7.07 16 50 H 0.16 2.25 7.65 -52.49 -0.40 1.85 16 51 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 52 H 0.17 2.18 8.01 -52.49 -0.42 1.76 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -28.04 398.17 -9.38 -37.42 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -8.73 Total: 12.73 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -2.14 Total: 2.65 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -0.05 Total: -64.37 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.54 Total: 17.24 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.04 -9.38 -37.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099199792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.075 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds