Wall clock time and date at job start Wed Apr 1 2020 04:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47111 * 2 1 4 4 C 1.50700 * 109.47443 * 240.00322 * 2 1 3 5 5 O 1.21276 * 119.99968 * 240.00051 * 4 2 1 6 6 N 1.34778 * 119.99930 * 59.99962 * 4 2 1 7 7 C 1.46496 * 119.99932 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47421 * 179.97438 * 7 6 4 9 9 H 1.09007 * 109.58748 * 299.94929 * 8 7 6 10 10 C 1.53184 * 109.59186 * 179.51791 * 8 7 6 11 11 C 1.53043 * 109.31627 * 185.57679 * 10 8 7 12 12 C 1.53036 * 109.53721 * 61.36636 * 11 10 8 13 13 C 1.52993 * 109.50067 * 178.68265 * 12 11 10 14 14 C 1.53006 * 109.52687 * 58.59863 * 12 11 10 15 15 C 1.53192 * 109.31135 * 298.63822 * 12 11 10 16 16 N 1.46926 * 108.77917 * 54.63513 * 15 12 11 17 17 C 1.36938 * 120.63123 * 126.41866 * 16 15 12 18 18 H 1.08001 * 119.99306 * 211.11528 * 17 16 15 19 19 C 1.38805 * 120.00206 * 31.11553 * 17 16 15 20 20 N 1.31620 * 120.00192 * 13.92333 * 19 17 16 21 21 Si 1.86803 * 119.99851 * 193.92599 * 19 17 16 22 22 H 1.48500 * 109.47227 * 89.99813 * 21 19 17 23 23 H 1.48500 * 109.46973 * 210.00178 * 21 19 17 24 24 H 1.48499 * 109.46908 * 329.99750 * 21 19 17 25 25 C 1.50696 * 109.47256 * 120.00069 * 2 1 3 26 26 C 1.38599 * 120.80542 * 240.00595 * 25 2 1 27 27 N 1.32331 * 119.10907 * 180.02562 * 26 25 2 28 28 C 1.31794 * 120.81806 * 359.97438 * 27 26 25 29 29 N 1.31799 * 121.75533 * 0.27699 * 28 27 26 30 30 C 1.32338 * 120.81324 * 359.44149 * 29 28 27 31 31 H 1.08999 * 109.46992 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47220 * 299.99570 * 1 2 3 33 33 H 1.09002 * 109.46951 * 60.00050 * 1 2 3 34 34 H 0.97003 * 119.99947 * 359.97438 * 6 4 2 35 35 H 1.08997 * 109.47524 * 299.99999 * 7 6 4 36 36 H 1.09002 * 109.47314 * 59.99645 * 7 6 4 37 37 H 1.09000 * 109.50036 * 305.53327 * 10 8 7 38 38 H 1.09004 * 109.49632 * 65.62373 * 10 8 7 39 39 H 1.08994 * 109.45702 * 301.34699 * 11 10 8 40 40 H 1.09000 * 109.46106 * 181.38668 * 11 10 8 41 41 H 1.08998 * 109.47243 * 179.83370 * 13 12 11 42 42 H 1.08996 * 109.47287 * 299.83746 * 13 12 11 43 43 H 1.09009 * 109.46843 * 59.83740 * 13 12 11 44 44 H 1.09000 * 109.47209 * 300.15429 * 14 12 11 45 45 H 1.09007 * 109.46556 * 60.14709 * 14 12 11 46 46 H 1.09000 * 109.47559 * 180.14530 * 14 12 11 47 47 H 1.09006 * 109.58697 * 294.84290 * 15 12 11 48 48 H 1.09003 * 109.70612 * 174.49334 * 15 12 11 49 49 H 0.96998 * 119.99735 * 180.02562 * 20 19 17 50 50 H 1.08002 * 120.44503 * 359.97438 * 26 25 2 51 51 H 1.07996 * 119.12608 * 180.02562 * 28 27 26 52 52 H 1.08007 * 120.44626 * 180.25182 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7068 -0.2498 -2.4546 7 6 2.1948 -0.9406 -3.6507 8 6 1.6844 -0.2197 -4.9000 9 1 0.5944 -0.2194 -4.9020 10 6 2.2030 -0.9329 -6.1525 11 6 1.8063 -0.1297 -7.3933 12 6 2.4449 1.2596 -7.3293 13 6 2.0746 2.0503 -8.5857 14 6 3.9662 1.1197 -7.2439 15 6 1.9291 1.9978 -6.0901 16 7 2.1773 1.1644 -4.9057 17 6 2.8547 1.6684 -3.8276 18 1 3.4619 1.0154 -3.2182 19 6 2.7608 3.0182 -3.5180 20 7 1.8247 3.7575 -4.0743 21 14 3.9632 3.7856 -2.3118 22 1 5.1489 4.2915 -3.0489 23 1 3.3031 4.9115 -1.6035 24 1 4.3935 2.7636 -1.3240 25 6 2.0323 -0.7104 1.2304 26 6 2.8300 -0.0529 2.1537 27 7 3.2529 -0.7093 3.2221 28 6 2.9241 -1.9711 3.4134 29 7 2.1716 -2.6297 2.5547 30 6 1.7074 -2.0369 1.4664 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.1488 0.5387 -2.5435 35 1 3.2847 -0.9411 -3.6509 36 1 1.8311 -1.9682 -3.6506 37 1 3.2890 -1.0126 -6.1025 38 1 1.7670 -1.9303 -6.2100 39 1 0.7216 -0.0294 -7.4294 40 1 2.1529 -0.6478 -8.2875 41 1 2.5273 3.0407 -8.5383 42 1 2.4419 1.5247 -9.4672 43 1 0.9907 2.1487 -8.6467 44 1 4.2295 0.5554 -6.3493 45 1 4.3328 0.5944 -8.1258 46 1 4.4200 2.1096 -7.1957 47 1 0.8590 2.1789 -6.1917 48 1 2.4520 2.9483 -5.9842 49 1 1.7594 4.7008 -3.8582 50 1 3.1035 0.9809 2.0027 51 1 3.2841 -2.4803 4.2951 52 1 1.0879 -2.5811 0.7688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099199793.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:23 Heat of formation + Delta-G solvation = 19.710733 kcal Electronic energy + Delta-G solvation = -32212.302369 eV Core-core repulsion = 28212.028972 eV Total energy + Delta-G solvation = -4000.273396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.11354 -39.45094 -38.51447 -35.27091 -34.57571 -33.63062 -33.27684 -32.22490 -30.11208 -30.04925 -27.43913 -26.64866 -25.55503 -25.28492 -24.46242 -23.86197 -22.47379 -22.07276 -20.18028 -19.50316 -17.96609 -17.71908 -17.61710 -16.80508 -15.99728 -15.82876 -15.60188 -14.67235 -14.55607 -14.32550 -14.10170 -13.88240 -13.78070 -13.64862 -13.51933 -13.47994 -13.31545 -12.94625 -12.68377 -12.39208 -12.23447 -12.21480 -11.75556 -11.54304 -11.37897 -11.33404 -11.19397 -10.94019 -10.85254 -10.78408 -10.73751 -10.63613 -10.46038 -10.17154 -10.12667 -9.85003 -9.56920 -9.49182 -9.36874 -9.21928 -9.12318 -8.65227 -8.29950 -6.71713 -5.91358 -3.37893 0.92604 1.14552 3.07334 3.24953 3.33952 3.36739 3.62907 3.93129 4.15844 4.26586 4.35006 4.56767 4.67240 4.82829 5.10628 5.15869 5.23044 5.25655 5.36319 5.40647 5.43982 5.53232 5.57316 5.69017 5.71620 5.76323 5.83109 5.97104 5.98488 6.06513 6.11958 6.13281 6.19448 6.28424 6.32252 6.40571 6.42288 6.43707 6.44030 6.48125 6.61253 6.86301 6.88753 6.96621 6.97958 7.07585 7.10485 7.32903 7.60742 7.71847 8.09666 8.15635 8.33498 8.75208 9.08924 9.70530 10.29050 11.14898 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.003438 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.187168 B = 8143.123909 C = 9283.215602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 H 0.112 0.888 4 C 0.513 3.487 5 O -0.560 6.560 6 N -0.687 5.687 7 C 0.135 3.865 8 C 0.161 3.839 9 H 0.031 0.969 10 C -0.130 4.130 11 C -0.095 4.095 12 C -0.095 4.095 13 C -0.133 4.133 14 C -0.124 4.124 15 C 0.187 3.813 16 N -0.585 5.585 17 C -0.250 4.250 18 H 0.069 0.931 19 C 0.010 3.990 20 N -0.897 5.897 21 Si 0.888 3.112 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C -0.159 4.159 26 C 0.151 3.849 27 N -0.522 5.522 28 C 0.282 3.718 29 N -0.523 5.523 30 C 0.180 3.820 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.416 0.584 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.050 0.950 42 H 0.041 0.959 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.030 0.970 46 H 0.044 0.956 47 H 0.017 0.983 48 H 0.085 0.915 49 H 0.254 0.746 50 H 0.166 0.834 51 H 0.192 0.808 52 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 -6.103 2.449 7.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 H 0.130 0.870 4 C 0.298 3.702 5 O -0.440 6.440 6 N -0.338 5.338 7 C 0.011 3.989 8 C 0.054 3.946 9 H 0.049 0.951 10 C -0.170 4.170 11 C -0.133 4.133 12 C -0.097 4.097 13 C -0.191 4.191 14 C -0.182 4.182 15 C 0.062 3.938 16 N -0.308 5.308 17 C -0.379 4.379 18 H 0.087 0.913 19 C -0.189 4.189 20 N -0.541 5.541 21 Si 0.718 3.282 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.164 4.164 26 C -0.014 4.014 27 N -0.236 5.236 28 C -0.006 4.006 29 N -0.236 5.236 30 C 0.014 3.986 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.254 0.746 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.104 0.896 49 H 0.064 0.936 50 H 0.183 0.817 51 H 0.209 0.791 52 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.925 -7.085 3.375 8.375 hybrid contribution 0.256 1.474 -0.351 1.537 sum -2.668 -5.611 3.023 6.910 Atomic orbital electron populations 1.21787 0.91681 1.02758 1.03500 1.20165 0.97885 1.00803 0.90100 0.86991 1.20137 0.80822 0.84533 0.84720 1.90668 1.39121 1.27232 1.86989 1.45962 1.51989 1.31459 1.04341 1.21292 0.99635 0.94042 0.83948 1.20724 0.95742 0.86884 0.91246 0.95108 1.22006 1.01472 0.97492 0.96019 1.21406 0.99578 0.95746 0.96584 1.21241 0.95828 0.95334 0.97268 1.21758 1.00639 0.99825 0.96916 1.21703 0.95046 1.00974 1.00433 1.20807 0.97039 0.94090 0.81905 1.44033 1.64780 1.07283 1.14731 1.19169 1.20890 0.92529 1.05334 0.91339 1.25040 0.97213 0.97990 0.98662 1.69996 1.31649 1.06656 1.45772 0.86521 0.81324 0.79142 0.81225 1.21425 1.21662 1.20384 1.21188 1.00514 0.96978 0.97699 1.23147 0.89939 1.00183 0.88167 1.68407 1.22801 1.10509 1.21855 1.24896 0.90790 0.87664 0.97274 1.68430 1.11738 1.39306 1.04115 1.22959 0.92786 0.90863 0.91977 0.92067 0.91493 0.90627 0.74579 0.91670 0.92727 0.91650 0.93153 0.92935 0.93655 0.93051 0.93970 0.93334 0.91623 0.95055 0.93655 0.96471 0.89639 0.93591 0.81654 0.79102 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.91 37.16 0.33 -1.19 16 2 C -0.07 -0.91 2.93 -92.93 -0.27 -1.18 16 3 H 0.11 1.50 7.95 -51.93 -0.41 1.09 16 4 C 0.51 8.64 7.04 -10.98 -0.08 8.56 16 5 O -0.56 -11.10 15.16 5.56 0.08 -11.02 16 6 N -0.69 -11.71 3.73 -60.30 -0.23 -11.94 16 7 C 0.13 2.34 4.43 -4.05 -0.02 2.32 16 8 C 0.16 2.85 3.01 -67.60 -0.20 2.64 16 9 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 10 C -0.13 -2.04 5.03 -26.61 -0.13 -2.18 16 11 C -0.10 -1.48 4.71 -26.69 -0.13 -1.60 16 12 C -0.09 -1.62 0.77 -154.39 -0.12 -1.74 16 13 C -0.13 -2.03 8.48 37.15 0.32 -1.71 16 14 C -0.12 -2.14 7.99 37.16 0.30 -1.84 16 15 C 0.19 3.90 3.95 -3.71 -0.01 3.89 16 16 N -0.58 -12.15 2.41 -164.77 -0.40 -12.55 16 17 C -0.25 -5.71 6.97 -15.06 -0.10 -5.81 16 18 H 0.07 1.64 5.86 -52.49 -0.31 1.33 16 19 C 0.01 0.25 4.97 -17.43 -0.09 0.17 16 20 N -0.90 -22.75 11.23 55.49 0.62 -22.13 16 21 Si 0.89 19.81 29.58 -169.99 -5.03 14.78 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 C -0.16 -2.22 4.40 -104.36 -0.46 -2.68 16 26 C 0.15 2.08 10.96 -17.20 -0.19 1.89 16 27 N -0.52 -7.38 10.44 -14.58 -0.15 -7.53 16 28 C 0.28 3.68 12.29 -92.15 -1.13 2.55 16 29 N -0.52 -7.50 10.44 -14.58 -0.15 -7.65 16 30 C 0.18 2.56 9.27 -17.20 -0.16 2.40 16 31 H 0.06 0.62 7.48 -51.93 -0.39 0.24 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 34 H 0.42 7.33 6.81 -40.82 -0.28 7.05 16 35 H 0.06 1.27 7.42 -51.93 -0.39 0.89 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.08 6.34 -51.93 -0.33 0.75 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.06 1.23 5.97 -51.93 -0.31 0.92 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 2.06 6.19 -51.93 -0.32 1.74 16 49 H 0.25 6.41 8.31 -40.82 -0.34 6.07 16 50 H 0.17 1.94 8.01 -52.49 -0.42 1.52 16 51 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 52 H 0.16 2.14 7.64 -52.48 -0.40 1.73 16 LS Contribution 401.71 15.07 6.05 6.05 Total: -1.00 -27.73 401.71 -9.92 -37.65 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -8.58 Total: 9.86 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -2.15 Total: 4.47 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.30 Total: -61.80 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -27.73 -9.92 -37.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099199793.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.362 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds