Wall clock time and date at job start Wed Apr 1 2020 04:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47111 * 2 1 4 4 C 1.50700 * 109.47443 * 240.00322 * 2 1 3 5 5 O 1.21276 * 119.99968 * 240.00051 * 4 2 1 6 6 N 1.34778 * 119.99930 * 59.99962 * 4 2 1 7 7 C 1.46496 * 119.99932 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47421 * 179.97438 * 7 6 4 9 9 H 1.09007 * 109.58748 * 299.94929 * 8 7 6 10 10 C 1.53184 * 109.59186 * 179.51791 * 8 7 6 11 11 C 1.53043 * 109.31627 * 185.57679 * 10 8 7 12 12 C 1.53036 * 109.53721 * 61.36636 * 11 10 8 13 13 C 1.52993 * 109.50067 * 178.68265 * 12 11 10 14 14 C 1.53006 * 109.52687 * 58.59863 * 12 11 10 15 15 C 1.53192 * 109.31135 * 298.63822 * 12 11 10 16 16 N 1.46926 * 108.77917 * 54.63513 * 15 12 11 17 17 C 1.36938 * 120.63123 * 126.41866 * 16 15 12 18 18 H 1.08001 * 119.99306 * 211.11528 * 17 16 15 19 19 C 1.38805 * 120.00206 * 31.11553 * 17 16 15 20 20 N 1.31620 * 120.00192 * 13.92333 * 19 17 16 21 21 Si 1.86803 * 119.99851 * 193.92599 * 19 17 16 22 22 H 1.48500 * 109.47227 * 89.99813 * 21 19 17 23 23 H 1.48500 * 109.46973 * 210.00178 * 21 19 17 24 24 H 1.48499 * 109.46908 * 329.99750 * 21 19 17 25 25 C 1.50696 * 109.47256 * 120.00069 * 2 1 3 26 26 C 1.38599 * 120.80542 * 240.00595 * 25 2 1 27 27 N 1.32331 * 119.10907 * 180.02562 * 26 25 2 28 28 C 1.31794 * 120.81806 * 359.97438 * 27 26 25 29 29 N 1.31799 * 121.75533 * 0.27699 * 28 27 26 30 30 C 1.32338 * 120.81324 * 359.44149 * 29 28 27 31 31 H 1.08999 * 109.46992 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47220 * 299.99570 * 1 2 3 33 33 H 1.09002 * 109.46951 * 60.00050 * 1 2 3 34 34 H 0.97003 * 119.99947 * 359.97438 * 6 4 2 35 35 H 1.08997 * 109.47524 * 299.99999 * 7 6 4 36 36 H 1.09002 * 109.47314 * 59.99645 * 7 6 4 37 37 H 1.09000 * 109.50036 * 305.53327 * 10 8 7 38 38 H 1.09004 * 109.49632 * 65.62373 * 10 8 7 39 39 H 1.08994 * 109.45702 * 301.34699 * 11 10 8 40 40 H 1.09000 * 109.46106 * 181.38668 * 11 10 8 41 41 H 1.08998 * 109.47243 * 179.83370 * 13 12 11 42 42 H 1.08996 * 109.47287 * 299.83746 * 13 12 11 43 43 H 1.09009 * 109.46843 * 59.83740 * 13 12 11 44 44 H 1.09000 * 109.47209 * 300.15429 * 14 12 11 45 45 H 1.09007 * 109.46556 * 60.14709 * 14 12 11 46 46 H 1.09000 * 109.47559 * 180.14530 * 14 12 11 47 47 H 1.09006 * 109.58697 * 294.84290 * 15 12 11 48 48 H 1.09003 * 109.70612 * 174.49334 * 15 12 11 49 49 H 0.96998 * 119.99735 * 180.02562 * 20 19 17 50 50 H 1.08002 * 120.44503 * 359.97438 * 26 25 2 51 51 H 1.07996 * 119.12608 * 180.02562 * 28 27 26 52 52 H 1.08007 * 120.44626 * 180.25182 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7068 -0.2498 -2.4546 7 6 2.1948 -0.9406 -3.6507 8 6 1.6844 -0.2197 -4.9000 9 1 0.5944 -0.2194 -4.9020 10 6 2.2030 -0.9329 -6.1525 11 6 1.8063 -0.1297 -7.3933 12 6 2.4449 1.2596 -7.3293 13 6 2.0746 2.0503 -8.5857 14 6 3.9662 1.1197 -7.2439 15 6 1.9291 1.9978 -6.0901 16 7 2.1773 1.1644 -4.9057 17 6 2.8547 1.6684 -3.8276 18 1 3.4619 1.0154 -3.2182 19 6 2.7608 3.0182 -3.5180 20 7 1.8247 3.7575 -4.0743 21 14 3.9632 3.7856 -2.3118 22 1 5.1489 4.2915 -3.0489 23 1 3.3031 4.9115 -1.6035 24 1 4.3935 2.7636 -1.3240 25 6 2.0323 -0.7104 1.2304 26 6 2.8300 -0.0529 2.1537 27 7 3.2529 -0.7093 3.2221 28 6 2.9241 -1.9711 3.4134 29 7 2.1716 -2.6297 2.5547 30 6 1.7074 -2.0369 1.4664 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.1488 0.5387 -2.5435 35 1 3.2847 -0.9411 -3.6509 36 1 1.8311 -1.9682 -3.6506 37 1 3.2890 -1.0126 -6.1025 38 1 1.7670 -1.9303 -6.2100 39 1 0.7216 -0.0294 -7.4294 40 1 2.1529 -0.6478 -8.2875 41 1 2.5273 3.0407 -8.5383 42 1 2.4419 1.5247 -9.4672 43 1 0.9907 2.1487 -8.6467 44 1 4.2295 0.5554 -6.3493 45 1 4.3328 0.5944 -8.1258 46 1 4.4200 2.1096 -7.1957 47 1 0.8590 2.1789 -6.1917 48 1 2.4520 2.9483 -5.9842 49 1 1.7594 4.7008 -3.8582 50 1 3.1035 0.9809 2.0027 51 1 3.2841 -2.4803 4.2951 52 1 1.0879 -2.5811 0.7688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099199793.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:22 Heat of formation + Delta-G solvation = 5.996862 kcal Electronic energy + Delta-G solvation = -32212.897047 eV Core-core repulsion = 28212.028972 eV Total energy + Delta-G solvation = -4000.868074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.19337 -40.82585 -39.92938 -36.66937 -35.75446 -34.96258 -34.68636 -33.63767 -31.71297 -31.15739 -28.77175 -28.01235 -27.29059 -26.32214 -25.52989 -25.18439 -23.98586 -23.30667 -21.68271 -20.81961 -19.44703 -18.88577 -18.63243 -18.25289 -17.43145 -17.19024 -17.09393 -16.10819 -15.79839 -15.72289 -15.44022 -15.34571 -15.19650 -14.85776 -14.68935 -14.63030 -14.55823 -14.40277 -13.98842 -13.73669 -13.53726 -13.24569 -13.06914 -12.97421 -12.84292 -12.73057 -12.55709 -12.48952 -12.44005 -12.18888 -12.10131 -11.83415 -11.81578 -11.78480 -11.60006 -11.24979 -10.99042 -10.88080 -10.75199 -10.45413 -10.36764 -10.23902 -9.78867 -8.47793 -7.76467 -5.22753 -0.11830 0.07134 1.41828 1.50984 1.53272 1.73309 2.37578 2.53131 2.83014 3.20810 3.23596 3.38067 3.51069 3.62482 3.63739 3.72511 4.02583 4.05468 4.06689 4.18001 4.22016 4.34965 4.38891 4.44787 4.53872 4.56123 4.70596 4.75236 4.78857 4.83173 4.88257 4.94997 4.96739 5.01042 5.07152 5.11661 5.15457 5.18399 5.21909 5.27271 5.39988 5.41553 5.51264 5.55836 5.61395 5.69380 5.76848 5.84557 5.91757 5.92619 6.50526 6.76059 7.05345 7.25748 7.37457 7.95239 8.49164 9.27135 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.003438 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.187168 B = 8143.123909 C = 9283.215602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 H 0.114 0.886 4 C 0.512 3.488 5 O -0.591 6.591 6 N -0.688 5.688 7 C 0.141 3.859 8 C 0.162 3.838 9 H 0.033 0.967 10 C -0.125 4.125 11 C -0.091 4.091 12 C -0.093 4.093 13 C -0.129 4.129 14 C -0.117 4.117 15 C 0.196 3.804 16 N -0.595 5.595 17 C -0.227 4.227 18 H 0.060 0.940 19 C -0.027 4.027 20 N -0.921 5.921 21 Si 0.928 3.072 22 H -0.302 1.302 23 H -0.293 1.293 24 H -0.274 1.274 25 C -0.167 4.167 26 C 0.144 3.856 27 N -0.535 5.535 28 C 0.279 3.721 29 N -0.537 5.537 30 C 0.173 3.827 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.027 0.973 47 H -0.004 1.004 48 H 0.048 0.952 49 H 0.246 0.754 50 H 0.182 0.818 51 H 0.224 0.776 52 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 -7.557 2.029 8.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.082 4.082 3 H 0.132 0.868 4 C 0.299 3.701 5 O -0.473 6.473 6 N -0.337 5.337 7 C 0.016 3.984 8 C 0.056 3.944 9 H 0.051 0.949 10 C -0.165 4.165 11 C -0.128 4.128 12 C -0.094 4.094 13 C -0.186 4.186 14 C -0.174 4.174 15 C 0.071 3.929 16 N -0.318 5.318 17 C -0.358 4.358 18 H 0.078 0.922 19 C -0.224 4.224 20 N -0.567 5.567 21 Si 0.759 3.241 22 H -0.230 1.230 23 H -0.219 1.219 24 H -0.199 1.199 25 C -0.171 4.171 26 C -0.021 4.021 27 N -0.249 5.249 28 C -0.008 4.008 29 N -0.250 5.250 30 C 0.007 3.993 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.251 0.749 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.047 0.953 47 H 0.014 0.986 48 H 0.066 0.934 49 H 0.056 0.944 50 H 0.199 0.801 51 H 0.240 0.760 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.339 -8.559 2.953 9.650 hybrid contribution 0.415 1.860 -0.221 1.919 sum -2.923 -6.699 2.732 7.803 Atomic orbital electron populations 1.21776 0.89539 1.03529 1.04269 1.20135 0.99590 1.00159 0.88326 0.86808 1.20658 0.79994 0.84117 0.85352 1.90649 1.40465 1.28712 1.87442 1.45980 1.51847 1.31293 1.04614 1.21219 0.98134 0.94927 0.84074 1.20850 0.95696 0.85198 0.92662 0.94940 1.21956 1.01092 0.98621 0.94801 1.21382 0.99613 0.94417 0.97437 1.21158 0.95717 0.96418 0.96126 1.21707 1.00910 0.99291 0.96738 1.21622 0.95080 1.00001 1.00746 1.20574 0.95253 0.93292 0.83822 1.44172 1.64798 1.08519 1.14334 1.19132 1.19633 0.92107 1.04931 0.92248 1.25386 0.98335 0.98568 1.00117 1.70099 1.33102 1.06249 1.47297 0.85872 0.79590 0.78507 0.80094 1.23028 1.21945 1.19866 1.21207 1.00996 0.97051 0.97879 1.23480 0.89559 1.01012 0.88083 1.68478 1.23230 1.11050 1.22096 1.25568 0.89923 0.87506 0.97814 1.68479 1.12404 1.39677 1.04484 1.23114 0.92893 0.91103 0.92171 0.91324 0.89780 0.90762 0.74870 0.94036 0.91099 0.92375 0.90381 0.92657 0.91091 0.94065 0.91473 0.92982 0.93497 0.92377 0.95333 0.98622 0.93352 0.94417 0.80121 0.75955 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.91 71.98 0.64 -2.09 16 2 C -0.06 -1.57 2.93 -12.29 -0.04 -1.60 16 3 H 0.11 2.96 7.95 -2.39 -0.02 2.94 16 4 C 0.51 17.02 7.04 87.66 0.62 17.64 16 5 O -0.59 -23.25 15.16 -3.02 -0.05 -23.29 16 6 N -0.69 -23.21 3.73 -463.08 -1.73 -24.94 16 7 C 0.14 4.79 4.43 86.38 0.38 5.17 16 8 C 0.16 5.55 3.01 44.97 0.14 5.69 16 9 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 10 C -0.13 -3.62 5.03 30.67 0.15 -3.47 16 11 C -0.09 -2.54 4.71 30.62 0.14 -2.40 16 12 C -0.09 -3.04 0.77 -52.11 -0.04 -3.08 16 13 C -0.13 -3.67 8.48 71.98 0.61 -3.06 16 14 C -0.12 -3.90 7.99 71.98 0.58 -3.33 16 15 C 0.20 8.28 3.95 86.36 0.34 8.62 16 16 N -0.59 -24.79 2.41 -675.23 -1.63 -26.42 16 17 C -0.23 -10.53 6.97 84.03 0.59 -9.94 16 18 H 0.06 2.87 5.86 -2.91 -0.02 2.85 16 19 C -0.03 -1.34 4.97 84.86 0.42 -0.92 16 20 N -0.92 -48.02 11.23 21.65 0.24 -47.77 16 21 Si 0.93 41.39 29.58 68.60 2.03 43.42 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 C -0.17 -4.50 4.40 -19.69 -0.09 -4.59 16 26 C 0.14 3.80 10.96 84.70 0.93 4.73 16 27 N -0.54 -14.42 10.44 -200.04 -2.09 -16.50 16 28 C 0.28 6.88 12.29 180.88 2.22 9.10 16 29 N -0.54 -14.80 10.44 -200.04 -2.09 -16.89 16 30 C 0.17 4.76 9.27 84.70 0.79 5.55 16 31 H 0.07 1.30 7.48 -2.39 -0.02 1.28 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.55 7.56 -2.39 -0.02 1.53 16 34 H 0.41 14.50 6.81 -92.71 -0.63 13.87 16 35 H 0.04 1.62 7.42 -2.39 -0.02 1.60 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 1.79 6.34 -2.39 -0.02 1.78 16 38 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.05 1.72 5.97 -2.39 -0.01 1.71 16 45 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 48 H 0.05 2.40 6.19 -2.39 -0.01 2.39 16 49 H 0.25 12.83 8.31 -92.71 -0.77 12.06 16 50 H 0.18 4.02 8.01 -2.91 -0.02 4.00 16 51 H 0.22 3.72 8.06 -2.91 -0.02 3.69 16 52 H 0.17 4.28 7.64 -2.91 -0.02 4.26 16 Total: -1.00 -60.41 401.71 3.36 -57.05 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.28 Total: 33.35 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 8.38 Total: 22.01 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -7.29 Total: -132.53 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.29 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -60.41 3.36 -57.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099199793.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.048 kcal (2) G-P(sol) polarization free energy of solvation -60.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds