Wall clock time and date at job start Wed Apr 1 2020 04:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47263 * 2 1 4 4 C 1.52997 * 109.47341 * 120.00473 * 2 1 3 5 5 C 1.53006 * 109.47127 * 64.99479 * 4 2 1 6 6 H 1.08997 * 109.47395 * 305.00572 * 5 4 2 7 7 C 1.52999 * 109.46811 * 65.00188 * 5 4 2 8 8 C 1.50699 * 109.47053 * 184.99965 * 5 4 2 9 9 O 1.21280 * 120.00014 * 0.02562 * 8 5 4 10 10 N 1.34773 * 119.99755 * 179.97438 * 8 5 4 11 11 C 1.46501 * 119.99786 * 179.97438 * 10 8 5 12 12 H 1.08994 * 110.41703 * 36.04404 * 11 10 8 13 13 C 1.54738 * 110.46429 * 158.66405 * 11 10 8 14 14 C 1.53497 * 101.50341 * 143.00929 * 13 11 10 15 15 C 1.53033 * 115.26590 * 105.33016 * 14 13 11 16 16 N 1.47751 * 85.82544 * 93.67885 * 15 14 13 17 17 C 1.36939 * 134.41013 * 203.93660 * 16 15 14 18 18 H 1.08000 * 119.99666 * 180.02562 * 17 16 15 19 19 C 1.38815 * 120.00098 * 0.04756 * 17 16 15 20 20 N 1.31612 * 120.00000 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99874 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47197 * 90.00116 * 21 19 17 23 23 H 1.48504 * 109.47057 * 210.00318 * 21 19 17 24 24 H 1.48504 * 109.47442 * 330.00293 * 21 19 17 25 25 C 1.47753 * 91.17332 * 23.97499 * 16 15 14 26 26 N 1.46162 * 106.64965 * 335.11564 * 14 13 11 27 27 C 1.37269 * 142.21786 * 196.42077 * 26 14 13 28 28 C 1.34513 * 106.91573 * 179.91367 * 27 26 14 29 29 N 1.33980 * 108.05098 * 0.02562 * 28 27 26 30 30 C 1.30865 * 109.34604 * 0.02652 * 29 28 27 31 31 H 1.08999 * 109.47412 * 59.98907 * 1 2 3 32 32 H 1.08994 * 109.47725 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46818 * 299.99489 * 1 2 3 34 34 H 1.09002 * 109.46818 * 240.00511 * 2 1 3 35 35 H 1.09001 * 109.46883 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47303 * 300.00805 * 3 2 1 37 37 H 1.09002 * 109.46786 * 60.00491 * 3 2 1 38 38 H 1.09001 * 109.46832 * 304.99800 * 4 2 1 39 39 H 1.08993 * 109.47194 * 184.99321 * 4 2 1 40 40 H 1.09001 * 109.47273 * 59.99848 * 7 5 4 41 41 H 1.09002 * 109.46911 * 179.97438 * 7 5 4 42 42 H 1.09009 * 109.47170 * 300.00068 * 7 5 4 43 43 H 0.96999 * 120.00431 * 0.02562 * 10 8 5 44 44 H 1.09002 * 111.02156 * 261.08205 * 13 11 10 45 45 H 1.09002 * 111.01810 * 24.96896 * 13 11 10 46 46 H 1.08999 * 113.81332 * 207.90744 * 15 14 13 47 47 H 1.08998 * 113.81658 * 339.44828 * 15 14 13 48 48 H 0.97002 * 119.99950 * 179.97438 * 20 19 17 49 49 H 1.09006 * 113.80878 * 221.79624 * 25 16 15 50 50 H 1.09001 * 113.81742 * 90.25354 * 25 16 15 51 51 H 1.07999 * 126.54045 * 359.90940 * 27 26 14 52 52 H 1.08005 * 125.97848 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6352 -2.1956 1.1878 6 1 0.5563 -2.2708 1.0526 7 6 2.3447 -2.8708 0.0124 8 6 2.0294 -2.8786 2.4720 9 8 2.5795 -2.2482 3.3500 10 7 1.7696 -4.1897 2.6452 11 6 2.1533 -4.8538 3.8934 12 1 2.0268 -4.1772 4.7385 13 6 1.3210 -6.1420 4.0988 14 6 2.3604 -7.0811 4.7263 15 6 2.1985 -7.3241 6.2285 16 7 1.4143 -8.5151 5.8418 17 6 0.4448 -9.2642 6.4535 18 1 0.0165 -10.1140 5.9429 19 6 0.0121 -8.9309 7.7297 20 7 0.5333 -7.8946 8.3516 21 14 -1.3110 -9.9522 8.5638 22 1 -0.6756 -11.0506 9.3353 23 1 -2.0952 -9.0901 9.4841 24 1 -2.2140 -10.5281 7.5350 25 6 2.0949 -8.5755 4.5318 26 7 3.6721 -6.6026 4.2942 27 6 4.9877 -6.9823 4.1978 28 6 5.6565 -5.9443 3.6641 29 7 4.7796 -4.9566 3.4399 30 6 3.5868 -5.3422 3.8156 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4424 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6768 1.9563 0.8901 38 1 1.6054 -0.2618 2.1369 39 1 3.1263 -0.6445 1.2950 40 1 3.4237 -2.7956 0.1476 41 1 2.0567 -3.9211 -0.0310 42 1 2.0597 -2.3767 -0.9165 43 1 1.3293 -4.6938 1.9431 44 1 0.4900 -5.9658 4.7819 45 1 0.9653 -6.5337 3.1458 46 1 3.1323 -7.5588 6.7395 47 1 1.6136 -6.5582 6.7378 48 1 0.2307 -7.6615 9.2432 49 1 1.4279 -8.7992 3.6992 50 1 2.9975 -9.1866 4.5324 51 1 5.4060 -7.9329 4.4939 52 1 6.7155 -5.9124 3.4540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101649375.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:26 Heat of formation + Delta-G solvation = 77.849462 kcal Electronic energy + Delta-G solvation = -31241.024343 eV Core-core repulsion = 27243.272031 eV Total energy + Delta-G solvation = -3997.752312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.26069 -39.89577 -38.58891 -37.12524 -35.42794 -33.50361 -32.78939 -31.75560 -30.42786 -28.16035 -27.41243 -27.39869 -26.79130 -25.37116 -24.87678 -23.42918 -22.13125 -21.22286 -20.62368 -19.69784 -19.48782 -18.65639 -17.29882 -17.04302 -16.36247 -15.91948 -15.61349 -15.21533 -14.92838 -14.52488 -14.40680 -14.15688 -14.09037 -13.86669 -13.67149 -13.49501 -13.29616 -13.21229 -12.86117 -12.61128 -12.48173 -12.36399 -12.13804 -12.06288 -11.82904 -11.66784 -11.57715 -11.40365 -11.13946 -11.04593 -10.93388 -10.87502 -10.69666 -10.64979 -10.58304 -10.22823 -9.81865 -9.62357 -9.50133 -9.15108 -9.02554 -8.98122 -8.02768 -7.18914 -5.98460 -3.34188 2.36327 2.74522 2.99365 3.21457 3.28088 3.33886 3.35247 3.59104 4.14942 4.27111 4.47113 4.51964 4.53519 4.68190 4.81615 4.84573 4.93285 4.94966 4.97934 5.08276 5.19710 5.29506 5.37542 5.38249 5.41369 5.47167 5.55879 5.59037 5.65071 5.70239 5.72234 5.81530 5.83864 5.87202 5.93454 5.94805 5.99377 6.02861 6.06586 6.16711 6.19471 6.21444 6.27017 6.45576 6.75679 6.81545 6.91568 7.19718 7.24016 7.46746 7.53875 7.72726 8.32975 8.51715 8.80805 9.47371 10.27702 11.18319 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.002610 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.951381 B =10726.156234 C =12005.323344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.095 4.095 5 C -0.110 4.110 6 H 0.098 0.902 7 C -0.144 4.144 8 C 0.521 3.479 9 O -0.524 6.524 10 N -0.718 5.718 11 C 0.230 3.770 12 H 0.116 0.884 13 C -0.095 4.095 14 C 0.102 3.898 15 C 0.171 3.829 16 N -0.600 5.600 17 C -0.231 4.231 18 H 0.085 0.915 19 C -0.002 4.002 20 N -0.918 5.918 21 Si 0.917 3.083 22 H -0.287 1.287 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.124 3.876 26 N -0.452 5.452 27 C -0.028 4.028 28 C -0.037 4.037 29 N -0.471 5.471 30 C 0.169 3.831 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.400 0.600 44 H 0.116 0.884 45 H 0.088 0.912 46 H 0.036 0.964 47 H 0.087 0.913 48 H 0.258 0.742 49 H 0.057 0.943 50 H 0.041 0.959 51 H 0.166 0.834 52 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 10.581 -17.721 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.133 4.133 5 C -0.131 4.131 6 H 0.115 0.885 7 C -0.202 4.202 8 C 0.307 3.693 9 O -0.399 6.399 10 N -0.370 5.370 11 C 0.123 3.877 12 H 0.134 0.866 13 C -0.134 4.134 14 C 0.017 3.983 15 C 0.045 3.955 16 N -0.327 5.327 17 C -0.358 4.358 18 H 0.102 0.898 19 C -0.199 4.199 20 N -0.563 5.563 21 Si 0.746 3.254 22 H -0.214 1.214 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.002 4.002 26 N -0.135 5.135 27 C -0.161 4.161 28 C -0.186 4.186 29 N -0.190 5.190 30 C -0.095 4.095 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.235 0.765 44 H 0.134 0.866 45 H 0.107 0.893 46 H 0.053 0.947 47 H 0.105 0.895 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.059 0.941 51 H 0.184 0.816 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.598 11.507 -17.031 20.615 hybrid contribution -0.637 -1.947 0.704 2.166 sum 0.961 9.560 -16.326 18.943 Atomic orbital electron populations 1.21916 0.95388 1.01768 1.01703 1.21199 0.95802 0.96275 0.98519 1.21824 1.01080 0.95929 1.01603 1.21461 1.01889 0.92093 0.97860 1.21364 1.02098 0.96610 0.93060 0.88453 1.21814 1.01352 1.00089 0.96895 1.20641 0.78046 0.81621 0.88963 1.90727 1.40643 1.64568 1.43945 1.45922 1.62216 1.10230 1.18627 1.19957 0.84759 0.94259 0.88743 0.86635 1.22570 0.97225 0.91019 1.02549 1.23740 0.77892 0.96186 1.00462 1.22501 0.94645 0.90783 0.87575 1.45791 1.40917 1.32381 1.13583 1.18971 1.10777 1.08225 0.97859 0.89756 1.24835 1.00007 0.98359 0.96713 1.69785 1.44646 1.27673 1.14226 0.86065 0.80860 0.79147 0.79321 1.21424 1.21398 1.20419 1.22711 0.95886 0.90309 0.91320 1.46566 1.07247 1.14818 1.44856 1.22333 0.82129 1.02267 1.09417 1.22213 0.99311 0.90281 1.06784 1.69795 0.97894 1.29580 1.21724 1.24530 0.96360 0.85540 1.03060 0.92923 0.92491 0.92595 0.90943 0.92641 0.92892 0.92645 0.91032 0.91123 0.91764 0.92368 0.91406 0.76524 0.86567 0.89306 0.94658 0.89475 0.93181 0.92477 0.94144 0.81632 0.81454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.95 37.16 0.33 -0.70 16 2 C -0.10 -0.75 2.78 -90.62 -0.25 -1.00 16 3 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 4 C -0.10 -0.94 3.50 -26.73 -0.09 -1.03 16 5 C -0.11 -1.05 2.59 -91.77 -0.24 -1.29 16 6 H 0.10 0.75 6.34 -51.93 -0.33 0.42 16 7 C -0.14 -1.19 8.85 37.16 0.33 -0.86 16 8 C 0.52 7.06 7.14 -10.99 -0.08 6.98 16 9 O -0.52 -9.42 15.63 5.56 0.09 -9.34 16 10 N -0.72 -8.91 5.05 -53.59 -0.27 -9.18 16 11 C 0.23 3.53 3.23 -67.70 -0.22 3.31 16 12 H 0.12 1.96 7.66 -51.93 -0.40 1.56 16 13 C -0.09 -1.40 6.17 -25.56 -0.16 -1.56 16 14 C 0.10 1.81 1.56 -136.74 -0.21 1.59 16 15 C 0.17 3.79 6.94 -3.34 -0.02 3.77 16 16 N -0.60 -14.05 3.69 -182.67 -0.67 -14.72 16 17 C -0.23 -5.98 10.70 -15.06 -0.16 -6.15 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 20 N -0.92 -25.65 11.39 55.49 0.63 -25.01 16 21 Si 0.92 20.90 29.55 -169.99 -5.02 15.88 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.12 2.33 8.46 -3.35 -0.03 2.30 16 26 N -0.45 -7.88 3.37 -103.53 -0.35 -8.23 16 27 C -0.03 -0.45 12.03 -16.43 -0.20 -0.64 16 28 C -0.04 -0.60 11.86 -17.93 -0.21 -0.81 16 29 N -0.47 -8.87 11.25 -10.50 -0.12 -8.99 16 30 C 0.17 3.01 8.22 -154.60 -1.27 1.74 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.36 6.46 -51.93 -0.34 0.03 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.51 6.34 -51.93 -0.33 0.18 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.44 7.56 -51.93 -0.39 0.04 16 42 H 0.07 0.44 6.46 -51.92 -0.34 0.11 16 43 H 0.40 3.75 7.80 -40.82 -0.32 3.43 16 44 H 0.12 1.81 7.92 -51.93 -0.41 1.40 16 45 H 0.09 1.09 7.76 -51.93 -0.40 0.68 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 2.11 7.08 -51.93 -0.37 1.74 16 48 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 50 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 52 H 0.17 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -32.74 411.92 -10.40 -43.14 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.65 Total: 5.46 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -2.24 Total: 4.79 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -0.78 Total: -66.14 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.74 -10.40 -43.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101649375.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.989 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds