Wall clock time and date at job start Wed Apr 1 2020 04:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53004 * 109.46851 * 2 1 4 4 C 1.52997 * 109.46991 * 119.99696 * 2 1 3 5 5 C 1.53002 * 109.46986 * 173.92761 * 4 2 1 6 6 H 1.08999 * 109.47086 * 53.30088 * 5 4 2 7 7 C 1.53007 * 109.46902 * 173.30388 * 5 4 2 8 8 C 1.50695 * 109.46961 * 293.30008 * 5 4 2 9 9 O 1.21281 * 120.00273 * 0.02562 * 8 5 4 10 10 N 1.34777 * 120.00127 * 179.97438 * 8 5 4 11 11 C 1.46496 * 120.00573 * 180.02562 * 10 8 5 12 12 H 1.09002 * 110.41597 * 327.48681 * 11 10 8 13 13 C 1.54760 * 110.46924 * 205.00260 * 11 10 8 14 14 C 1.53384 * 101.45072 * 265.35722 * 13 11 10 15 15 C 1.52455 * 115.85201 * 106.82624 * 14 13 11 16 16 N 1.47261 * 87.71874 * 90.71603 * 15 14 13 17 17 C 1.36936 * 135.94499 * 206.23549 * 16 15 14 18 18 H 1.08001 * 119.99805 * 353.72579 * 17 16 15 19 19 C 1.38805 * 119.99824 * 173.72721 * 17 16 15 20 20 N 1.31624 * 119.99973 * 177.31435 * 19 17 16 21 21 Si 1.86794 * 120.00441 * 357.31086 * 19 17 16 22 22 H 1.48500 * 109.47644 * 175.39760 * 21 19 17 23 23 H 1.48501 * 109.47142 * 295.40047 * 21 19 17 24 24 H 1.48506 * 109.47060 * 55.39680 * 21 19 17 25 25 C 1.47268 * 88.11119 * 26.49603 * 16 15 14 26 26 N 1.46039 * 106.81286 * 335.18773 * 14 13 11 27 27 C 1.37282 * 142.31750 * 196.37457 * 26 14 13 28 28 C 1.34518 * 106.92712 * 179.88522 * 27 26 14 29 29 N 1.33978 * 108.04738 * 0.02562 * 28 27 26 30 30 C 1.30850 * 109.35622 * 0.03992 * 29 28 27 31 31 H 1.09001 * 109.46972 * 300.00368 * 1 2 3 32 32 H 1.08997 * 109.46535 * 60.00064 * 1 2 3 33 33 H 1.08998 * 109.46502 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47162 * 240.00284 * 2 1 3 35 35 H 1.08998 * 109.46928 * 65.52469 * 3 2 1 36 36 H 1.09000 * 109.46534 * 185.52177 * 3 2 1 37 37 H 1.08997 * 109.47251 * 305.52545 * 3 2 1 38 38 H 1.09005 * 109.46849 * 53.92916 * 4 2 1 39 39 H 1.08999 * 109.47261 * 293.92999 * 4 2 1 40 40 H 1.09001 * 109.46930 * 304.99160 * 7 5 4 41 41 H 1.08998 * 109.46748 * 64.99285 * 7 5 4 42 42 H 1.09000 * 109.46634 * 184.99046 * 7 5 4 43 43 H 0.97007 * 119.99758 * 0.02562 * 10 8 5 44 44 H 1.08997 * 111.03152 * 147.31137 * 13 11 10 45 45 H 1.09008 * 111.05891 * 23.40724 * 13 11 10 46 46 H 1.08997 * 113.51158 * 336.01144 * 15 14 13 47 47 H 1.08993 * 113.57335 * 205.43928 * 15 14 13 48 48 H 0.97003 * 119.99743 * 354.97295 * 20 19 17 49 49 H 1.08999 * 113.51407 * 88.22031 * 25 16 15 50 50 H 1.08998 * 113.50692 * 218.78952 * 25 16 15 51 51 H 1.08003 * 126.53527 * 359.88488 * 27 26 14 52 52 H 1.07997 * 125.97057 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5625 -0.8547 1.1753 6 1 4.0051 0.1258 0.9998 7 6 4.0892 -1.4235 2.4945 8 6 3.9311 -1.7817 0.0458 9 8 3.0618 -2.2855 -0.6335 10 7 5.2268 -2.0500 -0.2102 11 6 5.5853 -2.9507 -1.3085 12 1 4.8231 -3.7198 -1.4337 13 6 6.9679 -3.5962 -1.0498 14 6 7.8957 -2.6474 -1.8190 15 6 8.7528 -1.7192 -0.9659 16 7 9.7924 -2.7621 -0.9804 17 6 10.8273 -3.1314 -0.1633 18 1 11.0803 -2.5263 0.6948 19 6 11.5512 -4.2835 -0.4379 20 7 12.5791 -4.6103 0.3165 21 14 11.0667 -5.3701 -1.8779 22 1 12.0558 -6.4681 -2.0244 23 1 9.7203 -5.9464 -1.6321 24 1 11.0387 -4.5598 -3.1221 25 6 9.2364 -3.2300 -2.2613 26 7 7.0867 -2.0159 -2.8580 27 6 7.1836 -1.3060 -4.0291 28 6 5.9275 -1.0568 -4.4410 29 7 5.0840 -1.5962 -3.5507 30 6 5.7701 -2.1725 -2.5972 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.7597 1.9270 0.9353 36 1 3.1256 1.4441 -0.0989 37 1 1.5982 1.9841 -0.8363 38 1 1.5907 -1.7127 1.3053 39 1 1.7682 -0.1484 2.1359 40 1 3.7472 -0.8005 3.3210 41 1 3.7166 -2.4392 2.6266 42 1 5.1789 -1.4358 2.4753 43 1 5.9221 -1.6467 0.3329 44 1 7.0118 -4.6048 -1.4607 45 1 7.2060 -3.5988 0.0140 46 1 8.3381 -1.5325 0.0247 47 1 9.0478 -0.8040 -1.4791 48 1 12.8758 -4.0101 1.0185 49 1 9.6632 -2.7284 -3.1298 50 1 9.2289 -4.3154 -2.3614 51 1 8.0945 -1.0050 -4.5250 52 1 5.6480 -0.5165 -5.3334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101649377.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:36 Heat of formation + Delta-G solvation = 68.551510 kcal Electronic energy + Delta-G solvation = -32032.980812 eV Core-core repulsion = 28034.825310 eV Total energy + Delta-G solvation = -3998.155501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.75919 -41.07677 -40.55014 -37.72460 -36.68065 -35.04685 -34.24386 -33.58772 -31.79013 -29.89555 -29.08227 -28.02345 -27.50244 -27.42662 -26.08665 -24.36771 -23.28628 -22.60166 -21.39850 -21.27252 -20.73959 -20.40600 -19.58749 -18.27266 -18.09279 -17.52105 -16.76923 -16.39816 -16.30305 -15.97709 -15.66602 -15.47142 -15.43322 -15.15042 -15.03890 -14.80723 -14.61663 -14.33854 -14.25008 -13.69658 -13.59785 -13.55196 -13.34452 -13.16327 -13.07710 -13.04171 -12.77660 -12.66125 -12.56116 -12.39029 -12.32825 -12.30155 -11.57399 -11.39495 -11.35709 -11.32427 -11.29943 -11.15803 -10.91626 -10.63887 -10.48006 -10.31309 -9.41559 -9.36299 -8.67736 -5.57114 0.91831 1.35670 1.43181 1.56521 1.63146 1.68299 1.92373 2.39101 2.48838 2.75035 2.79808 3.05083 3.17152 3.38837 3.39894 3.66112 3.82481 3.89211 3.96004 4.06138 4.15602 4.24192 4.33418 4.34930 4.36213 4.43461 4.45995 4.50873 4.52777 4.60550 4.69958 4.71058 4.79804 4.83196 4.85630 4.91208 4.93952 4.99669 5.01795 5.04277 5.11055 5.16764 5.29334 5.34807 5.36588 5.40325 5.53556 5.64158 5.85323 5.89259 6.03614 6.47721 6.61317 7.12983 7.22424 7.25612 8.09074 8.86310 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.003191 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.393402 B = 8772.398251 C = 9816.951872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.144 4.144 4 C -0.089 4.089 5 C -0.107 4.107 6 H 0.109 0.891 7 C -0.142 4.142 8 C 0.518 3.482 9 O -0.558 6.558 10 N -0.711 5.711 11 C 0.234 3.766 12 H 0.111 0.889 13 C -0.094 4.094 14 C 0.129 3.871 15 C 0.131 3.869 16 N -0.636 5.636 17 C -0.287 4.287 18 H 0.062 0.938 19 C -0.072 4.072 20 N -0.966 5.966 21 Si 1.097 2.903 22 H -0.307 1.307 23 H -0.261 1.261 24 H -0.270 1.270 25 C 0.098 3.902 26 N -0.457 5.457 27 C -0.029 4.029 28 C -0.038 4.038 29 N -0.500 5.500 30 C 0.160 3.840 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.412 0.588 44 H 0.113 0.887 45 H 0.126 0.874 46 H 0.079 0.921 47 H 0.050 0.950 48 H 0.251 0.749 49 H 0.055 0.945 50 H 0.059 0.941 51 H 0.192 0.808 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.727 9.797 0.480 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.201 4.201 4 C -0.127 4.127 5 C -0.128 4.128 6 H 0.127 0.873 7 C -0.200 4.200 8 C 0.307 3.693 9 O -0.436 6.436 10 N -0.364 5.364 11 C 0.126 3.874 12 H 0.129 0.871 13 C -0.133 4.133 14 C 0.043 3.957 15 C 0.005 3.995 16 N -0.365 5.365 17 C -0.414 4.414 18 H 0.080 0.920 19 C -0.265 4.265 20 N -0.611 5.611 21 Si 0.924 3.076 22 H -0.235 1.235 23 H -0.187 1.187 24 H -0.196 1.196 25 C -0.028 4.028 26 N -0.140 5.140 27 C -0.161 4.161 28 C -0.185 4.185 29 N -0.220 5.220 30 C -0.103 4.103 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.249 0.751 44 H 0.131 0.869 45 H 0.144 0.856 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.209 0.791 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -20.417 8.004 -0.635 21.940 hybrid contribution 1.675 1.777 0.614 2.518 sum -18.743 9.781 -0.021 21.141 Atomic orbital electron populations 1.21753 0.94780 1.01281 1.01892 1.21200 0.96327 0.96244 0.98733 1.21861 1.00392 0.95628 1.02189 1.21475 0.92129 1.00868 0.98237 1.21467 0.98829 0.98910 0.93614 0.87315 1.21806 1.01724 1.01640 0.94807 1.21298 0.81624 0.81331 0.85094 1.90692 1.49084 1.52599 1.51194 1.45991 1.08439 1.49143 1.32846 1.19649 0.97827 0.90085 0.79843 0.87071 1.22625 0.88897 0.98506 1.03262 1.22716 0.90169 0.95305 0.87504 1.22648 0.86283 0.91922 0.98666 1.45806 1.34772 1.35627 1.20289 1.19966 1.07662 1.08057 1.05752 0.92041 1.26833 0.95777 0.98649 1.05228 1.71013 1.27774 1.39313 1.22975 0.83429 0.75582 0.74921 0.73655 1.23540 1.18660 1.19591 1.23075 0.89792 0.99327 0.90607 1.46422 1.09465 1.39929 1.18189 1.22867 1.01763 1.02642 0.88878 1.22747 0.88109 1.05999 1.01680 1.69836 1.34812 1.13982 1.03343 1.24898 0.81326 1.04703 0.99417 0.91447 0.93169 0.93568 0.92935 0.91120 0.93479 0.93268 0.92539 0.89097 0.89470 0.92576 0.91215 0.75144 0.86864 0.85607 0.90329 0.93228 0.93996 0.92751 0.92292 0.79080 0.78694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.19 71.99 0.66 -1.82 16 2 C -0.11 -2.15 2.71 -10.79 -0.03 -2.18 16 3 C -0.14 -2.42 8.84 71.98 0.64 -1.79 16 4 C -0.09 -1.53 3.78 30.59 0.12 -1.42 16 5 C -0.11 -1.79 2.62 -11.54 -0.03 -1.82 16 6 H 0.11 1.60 6.44 -2.39 -0.02 1.59 16 7 C -0.14 -1.76 9.05 71.98 0.65 -1.11 16 8 C 0.52 12.44 6.82 87.66 0.60 13.04 16 9 O -0.56 -17.86 13.75 -3.03 -0.04 -17.91 16 10 N -0.71 -15.68 5.01 -441.77 -2.21 -17.89 16 11 C 0.23 6.05 3.29 45.16 0.15 6.20 16 12 H 0.11 3.06 7.55 -2.39 -0.02 3.04 16 13 C -0.09 -2.38 6.13 31.32 0.19 -2.19 16 14 C 0.13 3.78 1.66 3.93 0.01 3.79 16 15 C 0.13 4.19 8.15 83.46 0.68 4.87 16 16 N -0.64 -26.58 3.65 -738.30 -2.69 -29.28 16 17 C -0.29 -14.93 11.09 84.03 0.93 -14.00 16 18 H 0.06 3.44 8.05 -2.91 -0.02 3.42 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 20 N -0.97 -58.61 13.70 21.65 0.30 -58.31 16 21 Si 1.10 49.30 24.99 68.60 1.71 51.01 16 22 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 23 H -0.26 -10.36 6.77 99.48 0.67 -9.69 16 24 H -0.27 -11.09 6.36 99.48 0.63 -10.46 16 25 C 0.10 3.52 5.50 83.55 0.46 3.98 16 26 N -0.46 -13.22 3.41 -473.23 -1.61 -14.83 16 27 C -0.03 -0.77 12.03 82.99 1.00 0.23 16 28 C -0.04 -1.03 11.86 83.51 0.99 -0.04 16 29 N -0.50 -16.81 11.25 -187.09 -2.11 -18.92 16 30 C 0.16 4.92 8.23 138.31 1.14 6.06 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 1.48 6.02 -2.39 -0.01 1.47 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 0.83 6.72 -2.39 -0.02 0.81 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 1.14 7.89 -2.38 -0.02 1.12 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.77 7.71 -2.39 -0.02 0.75 16 43 H 0.41 7.33 8.14 -92.70 -0.75 6.57 16 44 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.13 2.93 7.87 -2.38 -0.02 2.91 16 46 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 47 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.25 15.21 8.73 -92.71 -0.81 14.40 16 49 H 0.05 1.95 8.12 -2.39 -0.02 1.93 16 50 H 0.06 2.18 3.97 -2.39 -0.01 2.17 16 51 H 0.19 4.00 8.06 -2.91 -0.02 3.98 16 52 H 0.20 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -72.09 405.29 1.98 -70.11 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.02 Total: 27.70 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 8.62 Total: 8.31 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -8.33 Total: -139.23 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.04 Total: -17.91 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.71 Total: 51.01 kcal Total: -72.09 1.98 -70.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101649377.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.661 kcal (2) G-P(sol) polarization free energy of solvation -72.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds